AT4G00695

DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0002942
Physical Location & Seq
Forward (+)
283592 .. 285975
2384 bp
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UTR
Exon/CDS
Intron
AT4G00695.5

Sequence Viewer

Length: 387 bp
ATGGAGGAATTAAGCCAAATCTTGAAGAACAATAGGACCGATGATCTCACTTGGTTTTGCTCTCTCTCAGAATCTGAACTGGATTTGCTCATCAGCTTAAAAAAGCTAGTCATTCGACGTGCCAAAGTAAGTGGTCTCGAAGATCTAGTAGCTGACAAATTTGATCTTAAGATGCTCCGATCTCTCGGGCTTGTGCTAATGGAGTATGTAAGAAAAAGAGTAGAAGATGATACTTCTCTTGCCCCAAGTGTTGTCCAAGAACTCAGCCTTTTGGATAGTTGTAACTTGTTGAAAACGCATGTAGATGATACTGTAGACATTGAGGAGATTCTGACTGATATCTGCAACAAGAAGTCAAAAAAGAAAACACGGAAAAGGAGCCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.74

Weight (kDa)

6.6

Isoelectric Point (pI)

54.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 315
AcsI RAATTY 1 cut(s) 158
AflII CTTAAG 1 cut(s) 167
AgsI TTSAA 2 cut(s) 25, 292
AjiI CACGTC 1 cut(s) 119
AluBI AGCT 3 cut(s) 96, 106, 152
AluI AGCT 3 cut(s) 96, 106, 152
Alw26I GTCTC 1 cut(s) 140
AlwNI CAGNNNCTG 1 cut(s) 74
Ama87I CYCGRG 1 cut(s) 185
ApoI RAATTY 1 cut(s) 158
AspS9I GGNCC 1 cut(s) 36
AvaI CYCGRG 1 cut(s) 185
AvaII GGWCC 1 cut(s) 36
BcoDI GTCTC 1 cut(s) 140
BfaI CTAG 2 cut(s) 107, 146
BfmI CTRYAG 1 cut(s) 312
BfrI CTTAAG 1 cut(s) 167
BglII AGATCT 1 cut(s) 142
Bme18I GGWCC 1 cut(s) 36
BmeT110I CYCGRG 1 cut(s) 185
BmgBI CACGTC 1 cut(s) 119
BmgT120I GGNCC 1 cut(s) 36
BmiI GGNNCC 1 cut(s) 380
BmsI GCATC 1 cut(s) 162
BsaI GGTCTC 1 cut(s) 140
Bse118I RCCGGY 1 cut(s) 381
Bse1I ACTGG 1 cut(s) 84
BseMII CTCAG 2 cut(s) 81, 277
BseNI ACTGG 1 cut(s) 84
BseRI GAGGAG 1 cut(s) 338
BsiHKCI CYCGRG 1 cut(s) 185
BsiSI CCGG 1 cut(s) 382
BsmAI GTCTC 1 cut(s) 140
Bso31I GGTCTC 1 cut(s) 140
BsoBI CYCGRG 1 cut(s) 185
Bsp143I GATC 4 cut(s) 43, 142, 163, 179
BspCNI CTCAG 2 cut(s) 80, 276
BspLI GGNNCC 1 cut(s) 380
BspTI CTTAAG 1 cut(s) 167
BspTNI GGTCTC 1 cut(s) 140
BsrFI RCCGGY 1 cut(s) 381
BsrI ACTGG 1 cut(s) 84
BssAI RCCGGY 1 cut(s) 381
BssMI GATC 4 cut(s) 43, 142, 163, 179
Bst4CI ACNGT 1 cut(s) 313
BstAFI CTTAAG 1 cut(s) 167
BstDEI CTNAG 2 cut(s) 67, 263
BstKTI GATC 4 cut(s) 46, 145, 166, 182
BstMAI GTCTC 1 cut(s) 140
BstMBI GATC 4 cut(s) 43, 142, 163, 179
BstNSI RCATGY 1 cut(s) 302
BstSFI CTRYAG 1 cut(s) 312
BstX2I RGATCY 1 cut(s) 142
BstYI RGATCY 1 cut(s) 142
BtrI CACGTC 1 cut(s) 119
CaiI CAGNNNCTG 1 cut(s) 74
Cfr10I RCCGGY 1 cut(s) 381
Cfr13I GGNCC 1 cut(s) 36
CspCI CAANNNNNGTGG 2 cut(s) 112, 147
CviAII CATG 1 cut(s) 299
CviJI RGCY 7 cut(s) 15, 96, 106, 152, 190, 267, 381
CviKI_1 RGCY 7 cut(s) 15, 96, 106, 152, 190, 267, 381
DdeI CTNAG 2 cut(s) 67, 263
DpnI GATC 4 cut(s) 45, 144, 165, 181
DpnII GATC 4 cut(s) 43, 142, 163, 179
Eco31I GGTCTC 1 cut(s) 140
Eco32I GATATC 1 cut(s) 340
Eco47I GGWCC 1 cut(s) 36
Eco88I CYCGRG 1 cut(s) 185
EcoRV GATATC 1 cut(s) 340
FaeI CATG 1 cut(s) 302
FaiI YATR 2 cut(s) 207, 300
FatI CATG 1 cut(s) 298
FblI GTMKAC 1 cut(s) 315
FspBI CTAG 2 cut(s) 107, 146
HapII CCGG 1 cut(s) 382
Hin1II CATG 1 cut(s) 302
HinfI GANTC 2 cut(s) 71, 328
HpaII CCGG 1 cut(s) 382
Hpy166II GTNNAC 1 cut(s) 316
Hpy188I TCNGA 4 cut(s) 70, 76, 179, 333
Hpy188III TCNNGA 2 cut(s) 22, 137
Hpy8I GTNNAC 1 cut(s) 316
Hpy99I CGWCG 1 cut(s) 120
HpyCH4III ACNGT 1 cut(s) 313
HpyCH4IV ACGT 1 cut(s) 118
HpyCH4V TGCA 1 cut(s) 345
HpyF3I CTNAG 2 cut(s) 67, 263
HpySE526I ACGT 1 cut(s) 118
Hsp92II CATG 1 cut(s) 302
Kzo9I GATC 4 cut(s) 43, 142, 163, 179
LmnI GCTCC 2 cut(s) 180, 378
LpnPI CCDG 1 cut(s) 65
LweI GCATC 1 cut(s) 162
MaeI CTAG 2 cut(s) 107, 146
MaeII ACGT 1 cut(s) 118
MaeIII GTNAC 1 cut(s) 281
MalI GATC 4 cut(s) 45, 144, 165, 181
MboI GATC 4 cut(s) 43, 142, 163, 179
MboII GAAGA 3 cut(s) 37, 152, 236
MflI RGATCY 1 cut(s) 142
MluCI AATT 2 cut(s) 8, 158
MnlI CCTC 1 cut(s) 316
MseI TTAA 3 cut(s) 11, 98, 168
MslI CAYNNNNRTG 1 cut(s) 303
MspCI CTTAAG 1 cut(s) 167
MspI CCGG 1 cut(s) 382
NdeII GATC 4 cut(s) 43, 142, 163, 179
NlaIII CATG 1 cut(s) 302
NlaIV GGNNCC 1 cut(s) 380
NspI RCATGY 1 cut(s) 302
PfeI GAWTC 2 cut(s) 71, 328
PspN4I GGNNCC 1 cut(s) 380
PspPI GGNCC 1 cut(s) 36
PstNI CAGNNNCTG 1 cut(s) 74
PsuI RGATCY 1 cut(s) 142
RseI CAYNNNNRTG 1 cut(s) 303
SaqAI TTAA 3 cut(s) 11, 98, 168
Sau3AI GATC 4 cut(s) 43, 142, 163, 179
Sau96I GGNCC 1 cut(s) 36
SetI ASST 4 cut(s) 98, 108, 121, 154
SfaNI GCATC 1 cut(s) 162
SfcI CTRYAG 1 cut(s) 312
SinI GGWCC 1 cut(s) 36
SmiMI CAYNNNNRTG 1 cut(s) 303
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
Sse9I AATT 2 cut(s) 8, 158
SspMI CTAG 2 cut(s) 107, 146
TaaI ACNGT 1 cut(s) 313
TaiI ACGT 1 cut(s) 121
TaqI TCGA 2 cut(s) 115, 138
TaqII GACCGA 1 cut(s) 53
TasI AATT 2 cut(s) 8, 158
TfiI GAWTC 2 cut(s) 71, 328
Tru1I TTAA 3 cut(s) 11, 98, 168
Tru9I TTAA 3 cut(s) 11, 98, 168
TspGWI ACGGA 1 cut(s) 385
Vha464I CTTAAG 1 cut(s) 167
VpaK11BI GGWCC 1 cut(s) 36
XapI RAATTY 1 cut(s) 158
XceI RCATGY 1 cut(s) 302
XmiI GTMKAC 1 cut(s) 315
XspI CTAG 2 cut(s) 107, 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.