Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002942

Physical Location & Seq

Genomic Coordinates Reverse (-)

6984164 .. 6986930

Gene Structure 2767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g11820.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGACCCAAATTTAGGACAGAACAGGCTTGAAGATGTCAGCTGGCTCTGTTCCCTCTCTGAGTCTGAGCTTGATTTGCTCATCAGCTTAAAGAAGCTTGTTCTTCAAAGGGCAAGAATGAATGGGCATAAAGAACTAGCACACAAGTTTGATCTCAAGGTGCTTAGAGCTCTTGCCTTCATTCTGATGACATGTATCAAAAATAAGGTTATGGATGTGTCACTTGTTCCAGGCTCTGAAGACTCTGCTGCAGTTATGGACAGTTGTAATCTATTGAAGTGTGACCTTGGAGATGTTATGAGTCTTGAAGAGATAAAGTCATGCATCGGTATTCATTTGAGAAAGGCAGGAACGAAAAGATTCTGTAACAGTATAACACTGAATGAAACTACACCAAGTCAGAAGAAACAAAAATTTGGAACCAGCGGAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

145

Amino Acids

15.97

Weight (kDa)

8.55

Isoelectric Point (pI)

46.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002942)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80245 AT1G80245 AT1G80245 AT1G80245 AT1G80245 AT1G80245 AT1G80245 AT4G00695 AT4G00695 AT4G00695 AT4G00695 AT4G00695
fragaria_vesca	FvH4_3g11820 FvH4_3g11820
malus_domestica	MD05G1258900.v1.1 MD10G1238500.v1.1
prunus_persica	Prupe.4G105800_v2.0.a1 Prupe.4G105800_v2.0.a1 Prupe.4G105800_v2.0.a1 Prupe.4G105800_v2.0.a1 Prupe.4G105800_v2.0.a1 Prupe.4G105800_v2.0.a1
pyrus_communis	pycom05g24350 pycom10g19950
rosa_chinensis	RchiOBHm_Chr5g0019241
rosa_laevigata	RLG00000032431
rosa_multiflora	Rmu_sc0002561.1_g000006
rosa_roxburghii	Rroxscaffold_1G00058750 Rroxscaffold_1G00074190
rosa_rugosa	Rorug05G0048600 Rorug05G0048700 Rorug05G0048800 Rorug05G0048900
rosa_samantha	Rh5AG140000 Rh5BG139000 Rh5CG150400 Rh5DG139600
rosa_wichuraiana	Rw5G012450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	426
AcsI	RAATTY	2 cut(s)	10, 413
AcuI	CTGAAG	1 cut(s)	258
AfiI	CCNNNNNNNGG	1 cut(s)	14
AflIII	ACRYGT	1 cut(s)	191
AgsI	TTSAA	4 cut(s)	32, 107, 277, 308
AjnI	CCWGG	1 cut(s)	229
AluBI	AGCT	5 cut(s)	42, 70, 87, 97, 170
AluI	AGCT	5 cut(s)	42, 70, 87, 97, 170
Alw21I	GWGCWC	1 cut(s)	172
AlwNI	CAGNNNCTG	1 cut(s)	236
ApeKI	GCWGC	1 cut(s)	248
ApoI	RAATTY	2 cut(s)	10, 413
Asp700I	GAANNNNTTC	1 cut(s)	359
AspS9I	GGNCC	1 cut(s)	4
AvaII	GGWCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	172
BbsI	GAAGAC	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	172
BbvI	GCAGC	1 cut(s)	235
BciT130I	CCWGG	1 cut(s)	231
BfaI	CTAG	1 cut(s)	137
BfmI	CTRYAG	1 cut(s)	249
BisI	GCNGC	1 cut(s)	249
BlsI	GCNGC	1 cut(s)	250
Bme1390I	CCNGG	1 cut(s)	231
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	6, 421
BmrFI	CCNGG	1 cut(s)	231
BmsI	GCATC	1 cut(s)	333
BpiI	GAAGAC	1 cut(s)	246
BpuEI	CTTGAG	1 cut(s)	140
BsaJI	CCNNGG	1 cut(s)	286
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
BseBI	CCWGG	1 cut(s)	231
BseDI	CCNNGG	1 cut(s)	286
BseGI	GGATG	1 cut(s)	220
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseMII	CTCAG	2 cut(s)	51, 57
BseXI	GCAGC	1 cut(s)	235
BsiHKAI	GWGCWC	1 cut(s)	172
BslI	CCNNNNNNNGG	1 cut(s)	14
Bsp1286I	GDGCHC	1 cut(s)	172
Bsp143I	GATC	1 cut(s)	151
BspACI	CCGC	1 cut(s)	426
BspCNI	CTCAG	2 cut(s)	52, 58
BspLI	GGNNCC	2 cut(s)	6, 421
BspMAI	CTGCAG	1 cut(s)	253
BssECI	CCNNGG	1 cut(s)	286
BssMI	GATC	1 cut(s)	151
BssT1I	CCWWGG	1 cut(s)	286
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	2 cut(s)	263, 371
Bst6I	CTCTTC	1 cut(s)	303
BstC8I	GCNNGC	1 cut(s)	44
BstDEI	CTNAG	3 cut(s)	60, 66, 164
BstF5I	GGATG	1 cut(s)	220
BstKTI	GATC	1 cut(s)	154
BstMBI	GATC	1 cut(s)	151
BstMWI	GCNNNNNNNGC	1 cut(s)	76
BstNI	CCWGG	1 cut(s)	231
BstNSI	RCATGY	1 cut(s)	195
BstSCI	CCNGG	1 cut(s)	229
BstSFI	CTRYAG	1 cut(s)	249
BstV1I	GCAGC	1 cut(s)	235
BstV2I	GAAGAC	1 cut(s)	246
BtsCI	GGATG	1 cut(s)	220
BtsIMutI	CAGTG	1 cut(s)	377
Cac8I	GCNNGC	1 cut(s)	44
CaiI	CAGNNNCTG	1 cut(s)	236
Cfr13I	GGNCC	1 cut(s)	4
CviAII	CATG	2 cut(s)	192, 321
CviJI	RGCY	8 cut(s)	28, 42, 46, 70, 87, 97, 170, 234
CviKI_1	RGCY	8 cut(s)	28, 42, 46, 70, 87, 97, 170, 234
DdeI	CTNAG	3 cut(s)	60, 66, 164
DpnI	GATC	1 cut(s)	153
DpnII	GATC	1 cut(s)	151
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
Ecl136II	GAGCTC	1 cut(s)	170
Eco130I	CCWWGG	1 cut(s)	286
Eco24I	GRGCYC	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	4
Eco53kI	GAGCTC	1 cut(s)	170
Eco57I	CTGAAG	1 cut(s)	258
EcoICRI	GAGCTC	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	286
EcoT22I	ATGCAT	1 cut(s)	326
EcoT38I	GRGCYC	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	286
FaeI	CATG	2 cut(s)	195, 324
FaiI	YATR	8 cut(s)	129, 193, 212, 257, 299, 322, 374, 433
FatI	CATG	2 cut(s)	191, 320
Fnu4HI	GCNGC	1 cut(s)	249
FokI	GGATG	1 cut(s)	227
FriOI	GRGCYC	1 cut(s)	172
Fsp4HI	GCNGC	1 cut(s)	249
FspBI	CTAG	1 cut(s)	137
GluI	GCNGC	1 cut(s)	249
Hin1II	CATG	2 cut(s)	195, 324
HindIII	AAGCTT	1 cut(s)	95
HinfI	GANTC	4 cut(s)	62, 242, 301, 360
Hpy188I	TCNGA	5 cut(s)	61, 67, 186, 238, 402
Hpy188III	TCNNGA	1 cut(s)	305
HpyAV	CCTTC	1 cut(s)	187
HpyCH4III	ACNGT	2 cut(s)	263, 371
HpyCH4V	TGCA	2 cut(s)	251, 324
HpyF10VI	GCNNNNNNNGC	1 cut(s)	76
HpyF3I	CTNAG	3 cut(s)	60, 66, 164
Hsp92II	CATG	2 cut(s)	195, 324
Kzo9I	GATC	1 cut(s)	151
LpnPI	CCDG	5 cut(s)	10, 28, 216, 243, 333
Lsp1109I	GCAGC	1 cut(s)	235
LweI	GCATC	1 cut(s)	333
MaeI	CTAG	1 cut(s)	137
MaeIII	GTNAC	3 cut(s)	219, 281, 365
MalI	GATC	1 cut(s)	153
MboI	GATC	1 cut(s)	151
MboII	GAAGA	5 cut(s)	44, 95, 251, 320, 415
MhlI	GDGCHC	1 cut(s)	172
MluCI	AATT	2 cut(s)	10, 413
MlyI	GAGTC	3 cut(s)	71, 236, 310
MnlI	CCTC	1 cut(s)	65
Mph1103I	ATGCAT	1 cut(s)	326
MroXI	GAANNNNTTC	1 cut(s)	359
MseI	TTAA	1 cut(s)	89
MslI	CAYNNNNRTG	1 cut(s)	185
MspA1I	CMGCKG	2 cut(s)	42, 426
MspR9I	CCNGG	1 cut(s)	231
MvaI	CCWGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	1 cut(s)	76
NdeII	GATC	1 cut(s)	151
NlaIII	CATG	2 cut(s)	195, 324
NlaIV	GGNNCC	2 cut(s)	6, 421
NmuCI	GTSAC	2 cut(s)	219, 281
NsiI	ATGCAT	1 cut(s)	326
NspI	RCATGY	1 cut(s)	195
PciI	ACATGT	1 cut(s)	191
PdmI	GAANNNNTTC	1 cut(s)	359
PfeI	GAWTC	1 cut(s)	360
PkrI	GCNGC	1 cut(s)	250
PleI	GAGTC	3 cut(s)	70, 236, 309
PpsI	GAGTC	3 cut(s)	70, 236, 309
PscI	ACATGT	1 cut(s)	191
Psp124BI	GAGCTC	1 cut(s)	172
Psp6I	CCWGG	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	229
PspN4I	GGNNCC	2 cut(s)	6, 421
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	1 cut(s)	253
PstNI	CAGNNNCTG	1 cut(s)	236
PvuII	CAGCTG	1 cut(s)	42
RseI	CAYNNNNRTG	1 cut(s)	185
SacI	GAGCTC	1 cut(s)	172
SaqAI	TTAA	1 cut(s)	89
SatI	GCNGC	1 cut(s)	249
Sau3AI	GATC	1 cut(s)	151
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	3 cut(s)	71, 236, 310
ScrFI	CCNGG	1 cut(s)	231
SduI	GDGCHC	1 cut(s)	172
SetI	ASST	8 cut(s)	44, 72, 89, 99, 162, 172, 210, 288
SfaNI	GCATC	1 cut(s)	333
SfcI	CTRYAG	1 cut(s)	249
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	1 cut(s)	185
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	2 cut(s)	10, 413
SsiI	CCGC	1 cut(s)	426
SspMI	CTAG	1 cut(s)	137
SstI	GAGCTC	1 cut(s)	172
StyD4I	CCNGG	1 cut(s)	229
StyI	CCWWGG	1 cut(s)	286
TaaI	ACNGT	2 cut(s)	263, 371
TasI	AATT	2 cut(s)	10, 413
TfiI	GAWTC	1 cut(s)	360
Tru1I	TTAA	1 cut(s)	89
Tru9I	TTAA	1 cut(s)	89
TscAI	CASTG	1 cut(s)	384
TseFI	GTSAC	2 cut(s)	219, 281
TseI	GCWGC	1 cut(s)	248
Tsp45I	GTSAC	2 cut(s)	219, 281
TspDTI	ATGAA	4 cut(s)	134, 169, 323, 399
TspRI	CASTG	1 cut(s)	384
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	2 cut(s)	10, 413
XceI	RCATGY	1 cut(s)	195
XmnI	GAANNNNTTC	1 cut(s)	359
XspI	CTAG	1 cut(s)	137
Zsp2I	ATGCAT	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.