AT1G80530

Nodulin-like

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
30277909 .. 30280359
2451 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G80530.1

Sequence Viewer

Length: 1686 bp
ATGACGAAGCTGGCGGAAAAATCGGGAAGCAGACCACCGTGGGTGGGATTAGCGGCAGCCGCATGGGTTCAGGTCTCGGCGGGAAGTGGTTCGACGTTCCCGCTTTACTCCTCCGCTCTCAAATCGGTTTTGGGTTTTAGCCAGCAGCAGGTCACGATCCTTGGCGTTGCTTGTGATTTGGGTGAAAACATGGGTCTTCTTCCTGGATACGCCAGTAACAAGCTTCCTCCATGGTCGATGCTTCTCATCGGAGCTTCCTCTTGTTTCCTCGGCTTCGGCGTTCTTTGGCTCTCCGTCAGCCAAATCGTTCTTGGCTTGCCTTTTTGGCTGCTTTTTGTAGCTCTAGCTTTAGCTACCAATAGCAACTCGTGGTTCGGTACAGCATCTCTTGTCACCAATATGAGGAATTTTCCTATGAGCCGAGGCCCTGTGGCTGGACTTCTCAAAGGTTATATTGGGATCAGTGGTGCAGCATTCACTGTCTTGTTCAGCATGGTGCTTCACCATTCAGCTATGGATCTGCTTCTGTTTCTTACGGTTGGTATTCCGGTTATATGCTTAACTGTGATGTATTTCATCCGCCCCTGTATTCCGGCTACTGGTGAAGACCCTTCTGAGCCCATGTATTTCGCTTTTCTGCTTGTCACTAGTATACTGTTTGCTGCTTATCTTGTTGTGACGACTGTTTTGAGTGAGGTGTTTATACTGCCCAGCATACTCAAATATGTTCTTGTGGCTATCATGGTGTTACTTTTGTTGTCGCCTCTTGCGGTTCCCATCAAGATGACACTTTTCCGTTCAAATGCCAAGAGCTCTCCACTGGGGTCTTCAGACAATCTAGCCAAAGAGGAAGGTACTCATGAAGAACCGTTGCTGACACCTTCTACCTCAGCTTCAAACCTTGGGCCTATCTTTGAGGGAGATGATGAGTCGGATATGGAAATACTTCTTGCTGAAGCAGAAGGTGCCGTGAAGAAGAAGAGAAAACCCAGGAGAGGTGAGGATTTCAAGTTTGGCCAAGTTTTTGTCAAGGCAGATTTCTGGCTCCTTTGGTTTGTCTACTTCCTCGGCATGGGTTCAGGTGTTACAGTCTCGAACAACTTGGCACAGATCGGATTTGCTTTTGGTATTAAGGACACAACAATACTCCTGTGTCTTTTCAGTTTCTTCAACTTCATAGGCCGTCTTGCTTCAGGTGCCATTTCTGAGCACTTTGTGAGGTCAAGAACGCTTCCAAGAACACTATGGATGGGAGCCGCGCAGCTAGTTATGGTGTTCACATTCCTCCTCTTCGCCATGGCTATCGACCACACCATTTACGTTGCGACTGCTCTAATCGGAATATGCATGGGGTTTCAGTTCTTATCTATCGCAACCATCTCCGAGCTATTTGGTCTTAGACATTTTGGAATCAACTTCAACTTCATACTGCTGGGAAACCCGCTTGGTGCCACCATTTTCTCGGCCATTCTCGCAGGATACATCTATGACAAGGAGGCTGATAAGCAAGGGAAGATGACCTGCATTGGTCCAGATTGCTTCCGAGTAACATTCTTGGTTCTAGCCGGTGTTTGTGGGCTTGGAACCCTGCTGAGCATTATTTTGACAGTGAGAATTCGCCCGGTTTATCAAGCTCTATATGCGTCTGGCTCATTCCGGTTGCAGCCGCAATCAACGGGTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

561

Amino Acids

60.71

Weight (kDa)

8.48

Isoelectric Point (pI)

34.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nodulin-like PF06813 13 - 260 4.7e-94 Nodulin-like
NFD4_C PF23262 343 - 543 1.6e-31 NFD4, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 139, 1529
AccB1I GGYRCC 3 cut(s) 965, 1196, 1448
AccBSI CCGCTC 1 cut(s) 116
AccI GTMKAC 2 cut(s) 652, 1059
AccII CGCG 1 cut(s) 1259
AclWI GGATC 3 cut(s) 151, 467, 525
AcoI YGGCCR 2 cut(s) 1015, 1464
AcsI RAATTY 2 cut(s) 406, 1614
AcuI CTGAAG 3 cut(s) 813, 975, 1176
AdeI CACNNNGTG 1 cut(s) 1216
AfaI GTAC 2 cut(s) 379, 856
AfiI CCNNNNNNNGG 7 cut(s) 44, 148, 402, 434, 599, 995, 1072
AgsI TTSAA 5 cut(s) 801, 897, 1009, 1171, 1420
AhlI ACTAGT 1 cut(s) 647
AjnI CCWGG 2 cut(s) 202, 989
Alw21I GWGCWC 2 cut(s) 815, 1212
Alw26I GTCTC 2 cut(s) 79, 1096
AlwI GGATC 3 cut(s) 151, 467, 525
AoxI GGCC 5 cut(s) 424, 905, 1015, 1180, 1464
ApeKI GCWGC 7 cut(s) 56, 145, 328, 470, 662, 1261, 1663
ApoI RAATTY 2 cut(s) 406, 1614
ArsI GACNNNNNNTTYG 2 cut(s) 670, 702
Asp700I GAANNNNTTC 2 cut(s) 88, 945
AspLEI GCGC 1 cut(s) 1261
AspS9I GGNCC 3 cut(s) 425, 905, 1529
AsuC2I CCSGG 1 cut(s) 1622
AsuHPI GGTGA 5 cut(s) 194, 385, 494, 614, 1010
AvaII GGWCC 1 cut(s) 1529
BaeI ACNNNNGTAYC 2 cut(s) 199, 232
BalI TGGCCA 1 cut(s) 1017
BanI GGYRCC 3 cut(s) 965, 1196, 1448
BanII GRGCYC 2 cut(s) 621, 815
BauI CACGAG 1 cut(s) 367
BbsI GAAGAC 3 cut(s) 188, 612, 819
Bbv12I GWGCWC 2 cut(s) 815, 1212
BbvCI CCTCAGC 1 cut(s) 889
BbvI GCAGC 7 cut(s) 68, 157, 315, 482, 649, 1273, 1675
BccI CCATC 3 cut(s) 785, 1243, 1385
BceAI ACGGC 2 cut(s) 953, 1167
BciT130I CCWGG 2 cut(s) 204, 991
BciVI GTATCC 2 cut(s) 200, 1472
BcnI CCSGG 1 cut(s) 1622
BcoDI GTCTC 2 cut(s) 79, 1096
BcuI ACTAGT 1 cut(s) 647
BfaI CTAG 5 cut(s) 344, 648, 839, 1265, 1562
BfuAI ACCTGC 2 cut(s) 139, 1529
BfuI GTATCC 2 cut(s) 200, 1472
BglI GCCNNNNNGGC 1 cut(s) 325
BlpI GCTNAGC 1 cut(s) 1592
Bme1390I CCNGG 3 cut(s) 204, 991, 1622
Bme18I GGWCC 1 cut(s) 1529
BmgT120I GGNCC 3 cut(s) 425, 905, 1529
BmiI GGNNCC 7 cut(s) 774, 967, 1046, 1198, 1255, 1450, 1585
BmrFI CCNGG 3 cut(s) 204, 991, 1622
BmrI ACTGGG 1 cut(s) 830
BmsI GCATC 2 cut(s) 228, 392
BmuI ACTGGG 1 cut(s) 830
BpiI GAAGAC 3 cut(s) 188, 612, 819
Bpu10I CCTNAGC 1 cut(s) 889
Bpu1102I GCTNAGC 1 cut(s) 1592
BpuMI CCSGG 1 cut(s) 1622
BsaI GGTCTC 1 cut(s) 79
BsaJI CCNNGG 9 cut(s) 38, 160, 230, 268, 421, 901, 989, 1066, 1296
BsaWI WCCGGW 2 cut(s) 547, 1656
Bsc4I CCNNNNNNNGG 7 cut(s) 44, 148, 402, 434, 599, 995, 1072
Bse118I RCCGGY 1 cut(s) 1565
Bse1I ACTGG 3 cut(s) 213, 604, 825
BseBI CCWGG 2 cut(s) 204, 991
BseDI CCNNGG 9 cut(s) 38, 160, 230, 268, 421, 901, 989, 1066, 1296
BseGI GGATG 2 cut(s) 576, 1254
BseLI CCNNNNNNNGG 7 cut(s) 44, 148, 402, 434, 599, 995, 1072
BseMII CTCAG 4 cut(s) 606, 903, 1197, 1583
BseNI ACTGG 3 cut(s) 213, 604, 825
BseRI GAGGAG 2 cut(s) 100, 1277
BseXI GCAGC 7 cut(s) 68, 157, 315, 482, 649, 1273, 1675
BseYI CCCAGC 2 cut(s) 710, 1432
BsgI GTGCAG 1 cut(s) 489
Bsh1236I CGCG 1 cut(s) 1259
BshFI GGCC 5 cut(s) 426, 907, 1017, 1182, 1466
BshNI GGYRCC 3 cut(s) 965, 1196, 1448
BsiHKAI GWGCWC 2 cut(s) 815, 1212
BsiSI CCGG 5 cut(s) 548, 593, 1566, 1622, 1657
BslI CCNNNNNNNGG 7 cut(s) 44, 148, 402, 434, 599, 995, 1072
BsmAI GTCTC 2 cut(s) 79, 1096
BsmI GAATGC 1 cut(s) 473
BsnI GGCC 5 cut(s) 426, 907, 1017, 1182, 1466
Bso31I GGTCTC 1 cut(s) 79
Bsp1286I GDGCHC 3 cut(s) 621, 815, 1212
Bsp143I GATC 4 cut(s) 156, 459, 517, 1110
Bsp1720I GCTNAGC 1 cut(s) 1592
Bsp19I CCATGG 2 cut(s) 230, 1296
BspANI GGCC 5 cut(s) 426, 907, 1017, 1182, 1466
BspCNI CTCAG 4 cut(s) 607, 902, 1198, 1584
BspFNI CGCG 1 cut(s) 1259
BspHI TCATGA 1 cut(s) 859
BspLI GGNNCC 7 cut(s) 774, 967, 1046, 1198, 1255, 1450, 1585
BspMI ACCTGC 2 cut(s) 139, 1529
BspPI GGATC 3 cut(s) 151, 467, 525
BspT107I GGYRCC 3 cut(s) 965, 1196, 1448
BspTNI GGTCTC 1 cut(s) 79
BsrBI CCGCTC 1 cut(s) 116
BsrFI RCCGGY 1 cut(s) 1565
BsrI ACTGG 3 cut(s) 213, 604, 825
BssAI RCCGGY 1 cut(s) 1565
BssECI CCNNGG 9 cut(s) 38, 160, 230, 268, 421, 901, 989, 1066, 1296
BssMI GATC 4 cut(s) 156, 459, 517, 1110
BssNAI GTATAC 1 cut(s) 653
BssSI CACGAG 1 cut(s) 367
BssT1I CCWWGG 4 cut(s) 160, 230, 901, 1296
Bst1107I GTATAC 1 cut(s) 653
Bst2BI CACGAG 1 cut(s) 367
Bst2UI CCWGG 2 cut(s) 204, 991
Bst4CI ACNGT 9 cut(s) 39, 481, 538, 565, 657, 685, 870, 1090, 1609
Bst6I CTCTTC 2 cut(s) 974, 1295
BstAPI GCANNNNNTGC 1 cut(s) 965
BstC8I GCNNGC 3 cut(s) 12, 143, 317
BstDEI CTNAG 5 cut(s) 615, 889, 1206, 1397, 1592
BstDSI CCRYGG 3 cut(s) 38, 230, 1296
BstF5I GGATG 2 cut(s) 576, 1254
BstFNI CGCG 1 cut(s) 1259
BstHHI GCGC 1 cut(s) 1261
BstKTI GATC 4 cut(s) 159, 462, 520, 1113
BstMAI GTCTC 2 cut(s) 79, 1096
BstMBI GATC 4 cut(s) 156, 459, 517, 1110
BstMWI GCNNNNNNNGC 6 cut(s) 59, 325, 965, 1196, 1472, 1640
BstNI CCWGG 2 cut(s) 204, 991
BstSCI CCNGG 3 cut(s) 202, 989, 1620
BstUI CGCG 1 cut(s) 1259
BstV1I GCAGC 7 cut(s) 68, 157, 315, 482, 649, 1273, 1675
BstV2I GAAGAC 3 cut(s) 188, 612, 819
BstX2I RGATCY 1 cut(s) 517
BstYI RGATCY 1 cut(s) 517
BstZ17I GTATAC 1 cut(s) 653
BsuI GTATCC 2 cut(s) 200, 1472
BsuRI GGCC 5 cut(s) 426, 907, 1017, 1182, 1466
BtgI CCRYGG 3 cut(s) 38, 230, 1296
BtsCI GGATG 2 cut(s) 576, 1254
BtsIMutI CAGTG 4 cut(s) 469, 477, 818, 1614
BveI ACCTGC 2 cut(s) 139, 1529
Cac8I GCNNGC 3 cut(s) 12, 143, 317
CciI TCATGA 1 cut(s) 859
CfoI GCGC 1 cut(s) 1261
Cfr10I RCCGGY 1 cut(s) 1565
Cfr13I GGNCC 3 cut(s) 425, 905, 1529
CseI GACGC 1 cut(s) 1632
Csp6I GTAC 2 cut(s) 378, 855
CviQI GTAC 2 cut(s) 378, 855
DdeI CTNAG 5 cut(s) 615, 889, 1206, 1397, 1592
DpnI GATC 4 cut(s) 158, 461, 519, 1112
DpnII GATC 4 cut(s) 156, 459, 517, 1110
DraIII CACNNNGTG 1 cut(s) 1216
EaeI YGGCCR 2 cut(s) 1015, 1464
Eam1104I CTCTTC 2 cut(s) 974, 1295
EarI CTCTTC 2 cut(s) 974, 1295
EciI GGCGGA 2 cut(s) 29, 569
Ecl136II GAGCTC 1 cut(s) 813
Eco130I CCWWGG 4 cut(s) 160, 230, 901, 1296
Eco24I GRGCYC 2 cut(s) 621, 815
Eco31I GGTCTC 1 cut(s) 79
Eco47I GGWCC 1 cut(s) 1529
Eco53kI GAGCTC 1 cut(s) 813
Eco57I CTGAAG 3 cut(s) 813, 975, 1176
EcoICRI GAGCTC 1 cut(s) 813
EcoO109I RGGNCCY 1 cut(s) 425
EcoRI GAATTC 1 cut(s) 1614
EcoRII CCWGG 2 cut(s) 202, 989
EcoT14I CCWWGG 4 cut(s) 160, 230, 901, 1296
EcoT22I ATGCAT 1 cut(s) 1349
EcoT38I GRGCYC 2 cut(s) 621, 815
ErhI CCWWGG 4 cut(s) 160, 230, 901, 1296
FauI CCCGC 3 cut(s) 73, 108, 1449
FblI GTMKAC 2 cut(s) 652, 1059
FokI GGATG 2 cut(s) 563, 1261
FriOI GRGCYC 2 cut(s) 621, 815
FspBI CTAG 5 cut(s) 344, 648, 839, 1265, 1562
GlaI GCGC 1 cut(s) 1260
GsaI CCCAGC 2 cut(s) 714, 1436
HaeIII GGCC 5 cut(s) 426, 907, 1017, 1182, 1466
HapII CCGG 5 cut(s) 548, 593, 1566, 1622, 1657
HgaI GACGC 1 cut(s) 1632
HhaI GCGC 1 cut(s) 1261
Hin6I GCGC 1 cut(s) 1259
HinP1I GCGC 1 cut(s) 1259
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 2 cut(s) 929, 1410
HpaII CCGG 5 cut(s) 548, 593, 1566, 1622, 1657
HphI GGTGA 5 cut(s) 194, 385, 494, 614, 1010
Hpy166II GTNNAC 3 cut(s) 653, 1060, 1278
Hpy188I TCNGA 9 cut(s) 251, 616, 832, 934, 1115, 1207, 1340, 1384, 1544
Hpy188III TCNNGA 7 cut(s) 24, 154, 781, 860, 1093, 1224, 1532
Hpy8I GTNNAC 3 cut(s) 653, 1060, 1278
Hpy99I CGWCG 1 cut(s) 97
HpyAV CCTTC 4 cut(s) 621, 845, 891, 956
HpyCH4III ACNGT 9 cut(s) 39, 481, 538, 565, 657, 685, 870, 1090, 1609
HpyCH4IV ACGT 2 cut(s) 95, 1320
HpyCH4V TGCA 4 cut(s) 470, 1347, 1524, 1663
HpyF10VI GCNNNNNNNGC 6 cut(s) 59, 325, 965, 1196, 1472, 1640
HpyF3I CTNAG 5 cut(s) 615, 889, 1206, 1397, 1592
HpySE526I ACGT 2 cut(s) 95, 1320
HspAI GCGC 1 cut(s) 1259
Kzo9I GATC 4 cut(s) 156, 459, 517, 1110
LmnI GCTCC 3 cut(s) 251, 1050, 1253
Lsp1109I GCAGC 7 cut(s) 68, 157, 315, 482, 649, 1273, 1675
LweI GCATC 2 cut(s) 228, 392
MaeI CTAG 5 cut(s) 344, 648, 839, 1265, 1562
MaeII ACGT 2 cut(s) 95, 1320
MaeIII GTNAC 8 cut(s) 151, 215, 391, 643, 676, 747, 1084, 1546
MalI GATC 4 cut(s) 158, 461, 519, 1112
MbiI CCGCTC 1 cut(s) 116
MboI GATC 4 cut(s) 156, 459, 517, 1110
MflI RGATCY 1 cut(s) 517
MhlI GDGCHC 3 cut(s) 621, 815, 1212
MlsI TGGCCA 1 cut(s) 1017
MluCI AATT 2 cut(s) 406, 1614
MluNI TGGCCA 1 cut(s) 1017
MlyI GAGTC 1 cut(s) 938
MmeI TCCRAC 1 cut(s) 912
Mox20I TGGCCA 1 cut(s) 1017
Mph1103I ATGCAT 1 cut(s) 1349
MroXI GAANNNNTTC 2 cut(s) 88, 945
MscI TGGCCA 1 cut(s) 1017
MseI TTAA 2 cut(s) 560, 1131
MslI CAYNNNNRTG 2 cut(s) 398, 782
Msp20I TGGCCA 1 cut(s) 1017
MspI CCGG 5 cut(s) 548, 593, 1566, 1622, 1657
MspR9I CCNGG 3 cut(s) 204, 991, 1622
Mva1269I GAATGC 1 cut(s) 473
MvaI CCWGG 2 cut(s) 204, 991
MvnI CGCG 1 cut(s) 1259
MwoI GCNNNNNNNGC 6 cut(s) 59, 325, 965, 1196, 1472, 1640
NciI CCSGG 1 cut(s) 1622
NcoI CCATGG 2 cut(s) 230, 1296
NdeII GATC 4 cut(s) 156, 459, 517, 1110
NlaIV GGNNCC 7 cut(s) 774, 967, 1046, 1198, 1255, 1450, 1585
NmeAIII GCCGAG 5 cut(s) 56, 249, 446, 1047, 1442
NmuCI GTSAC 4 cut(s) 151, 391, 643, 676
NsiI ATGCAT 1 cut(s) 1349
PagI TCATGA 1 cut(s) 859
PcsI WCGNNNNNNNCGW 1 cut(s) 276
PctI GAATGC 1 cut(s) 473
PdmI GAANNNNTTC 2 cut(s) 88, 945
PfeI GAWTC 1 cut(s) 1410
PfoI TCCNGGA 1 cut(s) 202
PleI GAGTC 1 cut(s) 937
PpsI GAGTC 1 cut(s) 937
Psp124BI GAGCTC 1 cut(s) 815
Psp6I CCWGG 2 cut(s) 202, 989
PspFI CCCAGC 2 cut(s) 710, 1432
PspGI CCWGG 2 cut(s) 202, 989
PspN4I GGNNCC 7 cut(s) 774, 967, 1046, 1198, 1255, 1450, 1585
PspPI GGNCC 3 cut(s) 425, 905, 1529
PsuI RGATCY 1 cut(s) 517
RsaI GTAC 2 cut(s) 379, 856
RsaNI GTAC 2 cut(s) 378, 855
RseI CAYNNNNRTG 2 cut(s) 398, 782
SacI GAGCTC 1 cut(s) 815
SaqAI TTAA 2 cut(s) 560, 1131
Sau3AI GATC 4 cut(s) 156, 459, 517, 1110
Sau96I GGNCC 3 cut(s) 425, 905, 1529
SchI GAGTC 1 cut(s) 938
ScrFI CCNGG 3 cut(s) 204, 991, 1622
SduI GDGCHC 3 cut(s) 621, 815, 1212
SfaNI GCATC 2 cut(s) 228, 392
SinI GGWCC 1 cut(s) 1529
SmiMI CAYNNNNRTG 2 cut(s) 398, 782
SpeI ACTAGT 1 cut(s) 647
Sse9I AATT 2 cut(s) 406, 1614
SspMI CTAG 5 cut(s) 344, 648, 839, 1265, 1562
SstI GAGCTC 1 cut(s) 815
StyD4I CCNGG 3 cut(s) 202, 989, 1620
StyI CCWWGG 4 cut(s) 160, 230, 901, 1296
TaaI ACNGT 9 cut(s) 39, 481, 538, 565, 657, 685, 870, 1090, 1609
TaiI ACGT 2 cut(s) 98, 1323
TaqI TCGA 4 cut(s) 92, 236, 1094, 1305
TasI AATT 2 cut(s) 406, 1614
TauI GCSGC 4 cut(s) 56, 62, 1259, 1669
TfiI GAWTC 1 cut(s) 1410
Tru1I TTAA 2 cut(s) 560, 1131
Tru9I TTAA 2 cut(s) 560, 1131
TscAI CASTG 4 cut(s) 469, 484, 825, 1614
TseFI GTSAC 4 cut(s) 151, 391, 643, 676
TseI GCWGC 7 cut(s) 56, 145, 328, 470, 662, 1261, 1663
Tsp45I GTSAC 4 cut(s) 151, 391, 643, 676
TspDTI ATGAA 4 cut(s) 565, 876, 1165, 1414
TspGWI ACGGA 2 cut(s) 283, 785
TspRI CASTG 4 cut(s) 469, 484, 825, 1614
VpaK11BI GGWCC 1 cut(s) 1529
XapI RAATTY 2 cut(s) 406, 1614
XcmI CCANNNNNNNNNTGG 2 cut(s) 308, 1242
XmiI GTMKAC 2 cut(s) 652, 1059
XmnI GAANNNNTTC 2 cut(s) 88, 945
XspI CTAG 5 cut(s) 344, 648, 839, 1265, 1562
Zsp2I ATGCAT 1 cut(s) 1349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.