Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8420697.1

Orthogroup ID

OG0002941

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1233

Gene Structure 1232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8420697.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

atggtagtacttctcatggcgccgcttgctatccctctaaaaatgacattttatcccacaagagtcagttcttcagataatttgaataatgaggatagcaatgcagatgaaactgaaccactgctgaagtcatctttatcaacaacaagcctagggagttttcgtgaagggaatgattcttcgtctgacatagctatgcttctcgccatgggtgagggggcagtgaagagaaagagaagacccaaaagaggggaagatttcaagtttactgaagctgtgatcaaggccgacttctggcttctgtttttggtttattttgtaggggttggtactggggtaactgttctgaataatttagctcaaataggtattgcacaaggaacgcatgataccacgatcttgttgtctctcttcagctttggcaatttcgtgggacgtcttggcggaggagttgtttctgaacattttgtcaagacaaaaacaattccgcggacattttggatgacttgcactcaaattataatgatctttatctatctgctatttgcttctgctatcaaaggaaccctttatgctgcgactgcactgcttgggatctgctacggtgtccaattttctatcatgatcccgaccgtctctgaactctttggattgaggcattttggcatattctacaatttcatgtcactagggaatcctctaggcgcatttcttttttcaggtctcctagcaggatacatatacgataatgaggcagcaaagcagcatggtcttaatcatctttatggaacaaatgtctcctgtttgggtccagattgctttagggttaccttccttgttctggcaggtgtctgtgaatacctcagaatacaaataactaagatcaagaactctccctctttccggcagcgtatttctttgtcatgggtctcaagaaaagcgaattcggcggcggatcacctcgcctcgcttgcggtggggagaatgtgcccggacgtctggattgatcgtccgccatcctcccttgttggtattctatcaagagatggattgccctgc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 Nodulin-like

Protein Analysis

353

Amino Acids

38.66

Weight (kDa)

8.92

Isoelectric Point (pI)

29.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80530
fragaria_vesca	FvH4_1g01960 FvH4_6g29100 FvH4_6g29100
malus_domestica	MD00G1182300.v1.1 MD02G1017800.v1.1 MD02G1017900.v1.1 MD17G1217900.v1.1
prunus_persica	Prupe.3G093500_v2.0.a1 Prupe.3G093500_v2.0.a1 Prupe.3G093500_v2.0.a1 Prupe.7G257000_v2.0.a1 Prupe.7G257000_v2.0.a1
pyrus_communis	pycom02g01580 pycom02g01590 pycom16g23280 pycom17g22210
rosa_chinensis	RchiOBHm_Chr2g0086971 RchiOBHm_Chr2g0134291
rosa_laevigata	RLG00000015819 RLG00000019384
rosa_multiflora	Rmu_co8300459.1_g000001 Rmu_co8420697.1_g000001 Rmu_sc0000418.1_g000001 Rmu_sc0000418.1_g000002 Rmu_sc0014586.1_g000007
rosa_roxburghii	Rroxscaffold_2G00110360 Rroxscaffold_2G00153980
rosa_rugosa	Rorug01G0471200 Rorug02G0315800 Rorug02G0315900
rosa_samantha	Rh2AG023900 Rh2AG368600 Rh2BG024400 Rh2CG024600 Rh2DG024500
rosa_wichuraiana	Rw2G001880 Rw2G030030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	521
AarI	CACCTGC	1 cut(s)	836
AatII	GACGTC	2 cut(s)	439, 999
Acc36I	ACCTGC	1 cut(s)	836
AccB1I	GGYRCC	1 cut(s)	19
AccII	CGCG	1 cut(s)	490
AciI	CCGC	8 cut(s)	23, 444, 488, 490, 950, 953, 974, 1013
AclWI	GGATC	3 cut(s)	602, 619, 963
AcsI	RAATTY	1 cut(s)	943
AcuI	CTGAAG	4 cut(s)	57, 146, 291, 397
AcyI	GRCGYC	3 cut(s)	20, 436, 996
AfaI	GTAC	2 cut(s)	9, 331
AfiI	CCNNNNNNNGG	5 cut(s)	248, 249, 294, 841, 903
AgsI	TTSAA	2 cut(s)	85, 262
AluBI	AGCT	4 cut(s)	194, 275, 359, 417
AluI	AGCT	4 cut(s)	194, 275, 359, 417
Alw26I	GTCTC	5 cut(s)	411, 640, 728, 802, 934
AlwI	GGATC	3 cut(s)	602, 619, 963
AoxI	GGCC	1 cut(s)	285
ApeKI	GCWGC	4 cut(s)	575, 755, 763, 907
ApoI	RAATTY	1 cut(s)	943
AspA2I	CCTAGG	1 cut(s)	151
AspLEI	GCGC	2 cut(s)	22, 707
AspS9I	GGNCC	1 cut(s)	809
AsuC2I	CCSGG	1 cut(s)	992
AsuHPI	GGTGA	2 cut(s)	224, 950
AvaII	GGWCC	1 cut(s)	809
AvrII	CCTAGG	1 cut(s)	151
BaeGI	GKGCMC	1 cut(s)	992
BaeI	ACNNNNGTAYC	2 cut(s)	321, 354
BanI	GGYRCC	1 cut(s)	19
BbsI	GAAGAC	1 cut(s)	244
BbvI	GCAGC	4 cut(s)	562, 767, 775, 919
BccI	CCATC	2 cut(s)	1024, 1040
BcgI	CGANNNNNNTGC	2 cut(s)	568, 602
BciVI	GTATCC	1 cut(s)	728
BclI	TGATCA	1 cut(s)	279
BcnI	CCSGG	1 cut(s)	992
BcoDI	GTCTC	5 cut(s)	411, 640, 728, 802, 934
BfaI	CTAG	4 cut(s)	152, 689, 701, 728
BfoI	RGCGCY	1 cut(s)	23
BfuAI	ACCTGC	1 cut(s)	836
BfuI	GTATCC	1 cut(s)	728
BisI	GCNGC	6 cut(s)	23, 576, 756, 764, 908, 951
BlnI	CCTAGG	1 cut(s)	151
BlsI	GCNGC	6 cut(s)	24, 577, 757, 765, 909, 952
BmcAI	AGTACT	1 cut(s)	9
Bme1390I	CCNGG	1 cut(s)	992
Bme18I	GGWCC	1 cut(s)	809
BmgT120I	GGNCC	1 cut(s)	809
BmiI	GGNNCC	3 cut(s)	21, 565, 810
BmrFI	CCNGG	1 cut(s)	992
BmrI	ACTGGG	1 cut(s)	342
BmuI	ACTGGG	1 cut(s)	342
BpiI	GAAGAC	1 cut(s)	244
BpuEI	CTTGAG	1 cut(s)	916
BpuMI	CCSGG	1 cut(s)	992
BsaBI	GATNNNNATC	1 cut(s)	530
BsaHI	GRCGYC	3 cut(s)	20, 436, 996
BsaI	GGTCTC	2 cut(s)	728, 934
BsaJI	CCNNGG	3 cut(s)	151, 207, 488
BsaXI	ACNNNNNCTCC	4 cut(s)	148, 178, 438, 468
Bsc4I	CCNNNNNNNGG	5 cut(s)	248, 249, 294, 841, 903
Bse1I	ACTGG	1 cut(s)	337
Bse3DI	GCAATG	1 cut(s)	106
Bse8I	GATNNNNATC	1 cut(s)	530
BseDI	CCNNGG	3 cut(s)	151, 207, 488
BseGI	GGATG	2 cut(s)	507, 1016
BseJI	GATNNNNATC	1 cut(s)	530
BseLI	CCNNNNNNNGG	5 cut(s)	248, 249, 294, 841, 903
BseMI	GCAATG	1 cut(s)	106
BseMII	CTCAG	1 cut(s)	877
BseNI	ACTGG	1 cut(s)	337
BseRI	GAGGAG	1 cut(s)	462
BseSI	GKGCMC	1 cut(s)	992
BseXI	GCAGC	4 cut(s)	562, 767, 775, 919
BsgI	GTGCAG	1 cut(s)	567
Bsh1236I	CGCG	1 cut(s)	490
Bsh1285I	CGRYCG	1 cut(s)	633
BshFI	GGCC	1 cut(s)	287
BshNI	GGYRCC	1 cut(s)	19
BsiEI	CGRYCG	1 cut(s)	633
BsiSI	CCGG	2 cut(s)	904, 992
BslFI	GGGAC	1 cut(s)	447
BslI	CCNNNNNNNGG	5 cut(s)	248, 249, 294, 841, 903
BsmAI	GTCTC	5 cut(s)	411, 640, 728, 802, 934
BsmBI	CGTCTC	1 cut(s)	640
BsmFI	GGGAC	1 cut(s)	447
BsnI	GGCC	1 cut(s)	287
Bso31I	GGTCTC	2 cut(s)	728, 934
Bsp1286I	GDGCHC	1 cut(s)	992
Bsp143I	GATC	8 cut(s)	279, 396, 525, 594, 624, 882, 955, 1006
Bsp19I	CCATGG	1 cut(s)	207
BspACI	CCGC	8 cut(s)	23, 444, 488, 490, 950, 953, 974, 1013
BspANI	GGCC	1 cut(s)	287
BspCNI	CTCAG	1 cut(s)	876
BspFNI	CGCG	1 cut(s)	490
BspHI	TCATGA	1 cut(s)	621
BspLI	GGNNCC	3 cut(s)	21, 565, 810
BspMI	ACCTGC	1 cut(s)	836
BspPI	GGATC	3 cut(s)	602, 619, 963
BspT107I	GGYRCC	1 cut(s)	19
BspTNI	GGTCTC	2 cut(s)	728, 934
BsrDI	GCAATG	1 cut(s)	106
BsrI	ACTGG	1 cut(s)	337
BssECI	CCNNGG	3 cut(s)	151, 207, 488
BssMI	GATC	8 cut(s)	279, 396, 525, 594, 624, 882, 955, 1006
BssNI	GRCGYC	3 cut(s)	20, 436, 996
BssT1I	CCWWGG	2 cut(s)	151, 207
Bst4CI	ACNGT	3 cut(s)	343, 605, 634
Bst6I	CTCTTC	2 cut(s)	221, 416
BstACI	GRCGYC	3 cut(s)	20, 436, 996
BstC8I	GCNNGC	2 cut(s)	27, 972
BstDEI	CTNAG	2 cut(s)	863, 879
BstDSI	CCRYGG	2 cut(s)	207, 488
BstEII	GGTNACC	1 cut(s)	826
BstF5I	GGATG	2 cut(s)	507, 1016
BstFNI	CGCG	1 cut(s)	490
BstH2I	RGCGCY	1 cut(s)	23
BstHHI	GCGC	2 cut(s)	22, 707
BstKTI	GATC	8 cut(s)	282, 399, 528, 597, 627, 885, 958, 1009
BstMAI	GTCTC	5 cut(s)	411, 640, 728, 802, 934
BstMBI	GATC	8 cut(s)	279, 396, 525, 594, 624, 882, 955, 1006
BstMCI	CGRYCG	1 cut(s)	633
BstMWI	GCNNNNNNNGC	4 cut(s)	26, 581, 947, 971
BstPI	GGTNACC	1 cut(s)	826
BstSCI	CCNGG	1 cut(s)	990
BstSLI	GKGCMC	1 cut(s)	992
BstUI	CGCG	1 cut(s)	490
BstV1I	GCAGC	4 cut(s)	562, 767, 775, 919
BstV2I	GAAGAC	1 cut(s)	244
BstX2I	RGATCY	1 cut(s)	594
BstYI	RGATCY	1 cut(s)	594
BsuI	GTATCC	1 cut(s)	728
BsuRI	GGCC	1 cut(s)	287
BtgI	CCRYGG	2 cut(s)	207, 488
BtsCI	GGATG	2 cut(s)	507, 1016
BtsI	GCAGTG	3 cut(s)	119, 228, 584
BtsIMutI	CAGTG	3 cut(s)	119, 228, 584
BveI	ACCTGC	1 cut(s)	836
Cac8I	GCNNGC	2 cut(s)	27, 972
CciI	TCATGA	1 cut(s)	621
CfoI	GCGC	2 cut(s)	22, 707
Cfr13I	GGNCC	1 cut(s)	809
Cfr42I	CCGCGG	1 cut(s)	491
Csp6I	GTAC	2 cut(s)	8, 330
CviAII	CATG	7 cut(s)	16, 208, 386, 622, 682, 767, 924
CviJI	RGCY	7 cut(s)	150, 194, 275, 287, 298, 359, 417
CviKI_1	RGCY	7 cut(s)	150, 194, 275, 287, 298, 359, 417
CviQI	GTAC	2 cut(s)	8, 330
DdeI	CTNAG	2 cut(s)	863, 879
DinI	GGCGCC	1 cut(s)	21
DpnI	GATC	8 cut(s)	281, 398, 527, 596, 626, 884, 957, 1008
DpnII	GATC	8 cut(s)	279, 396, 525, 594, 624, 882, 955, 1006
Eam1104I	CTCTTC	2 cut(s)	221, 416
EarI	CTCTTC	2 cut(s)	221, 416
EciI	GGCGGA	3 cut(s)	459, 968, 1002
Eco130I	CCWWGG	2 cut(s)	151, 207
Eco31I	GGTCTC	2 cut(s)	728, 934
Eco47I	GGWCC	1 cut(s)	809
Eco57I	CTGAAG	4 cut(s)	57, 146, 291, 397
Eco91I	GGTNACC	1 cut(s)	826
EcoO65I	GGTNACC	1 cut(s)	826
EcoRI	GAATTC	1 cut(s)	943
EcoT14I	CCWWGG	2 cut(s)	151, 207
EgeI	GGCGCC	1 cut(s)	21
EheI	GGCGCC	1 cut(s)	21
ErhI	CCWWGG	2 cut(s)	151, 207
Esp3I	CGTCTC	1 cut(s)	640
FaeI	CATG	7 cut(s)	19, 211, 389, 625, 685, 770, 927
FalI	AAGNNNNNCTT	4 cut(s)	275, 307, 552, 584
FaqI	GGGAC	1 cut(s)	447
FatI	CATG	7 cut(s)	15, 207, 385, 621, 681, 766, 923
FbaI	TGATCA	1 cut(s)	279
Fnu4HI	GCNGC	6 cut(s)	23, 576, 756, 764, 908, 951
FokI	GGATG	2 cut(s)	514, 1003
Fsp4HI	GCNGC	6 cut(s)	23, 576, 756, 764, 908, 951
FspBI	CTAG	4 cut(s)	152, 689, 701, 728
GlaI	GCGC	2 cut(s)	21, 706
GluI	GCNGC	6 cut(s)	23, 576, 756, 764, 908, 951
HaeII	RGCGCY	1 cut(s)	23
HaeIII	GGCC	1 cut(s)	287
HapII	CCGG	2 cut(s)	904, 992
HhaI	GCGC	2 cut(s)	22, 707
Hin1I	GRCGYC	3 cut(s)	20, 436, 996
Hin1II	CATG	7 cut(s)	19, 211, 389, 625, 685, 770, 927
Hin6I	GCGC	2 cut(s)	20, 705
HinP1I	GCGC	2 cut(s)	20, 705
HinfI	GANTC	3 cut(s)	63, 176, 694
HpaII	CCGG	2 cut(s)	904, 992
HphI	GGTGA	2 cut(s)	224, 950
Hpy166II	GTNNAC	1 cut(s)	267
Hpy188I	TCNGA	6 cut(s)	76, 187, 348, 460, 640, 866
Hpy188III	TCNNGA	9 cut(s)	164, 472, 622, 628, 812, 886, 933, 1000, 1041
Hpy8I	GTNNAC	1 cut(s)	267
HpyAV	CCTTC	2 cut(s)	161, 841
HpyCH4III	ACNGT	3 cut(s)	343, 605, 634
HpyCH4IV	ACGT	2 cut(s)	436, 996
HpyCH4V	TGCA	4 cut(s)	104, 374, 510, 584
HpyF10VI	GCNNNNNNNGC	4 cut(s)	26, 581, 947, 971
HpyF3I	CTNAG	2 cut(s)	863, 879
HpySE526I	ACGT	2 cut(s)	436, 996
Hsp92I	GRCGYC	3 cut(s)	20, 436, 996
Hsp92II	CATG	7 cut(s)	19, 211, 389, 625, 685, 770, 927
HspAI	GCGC	2 cut(s)	20, 705
KasI	GGCGCC	1 cut(s)	19
Ksp22I	TGATCA	1 cut(s)	279
KspI	CCGCGG	1 cut(s)	491
Kzo9I	GATC	8 cut(s)	279, 396, 525, 594, 624, 882, 955, 1006
Lsp1109I	GCAGC	4 cut(s)	562, 767, 775, 919
MaeI	CTAG	4 cut(s)	152, 689, 701, 728
MaeII	ACGT	2 cut(s)	436, 996
MaeIII	GTNAC	3 cut(s)	337, 684, 826
MalI	GATC	8 cut(s)	281, 398, 527, 596, 626, 884, 957, 1008
MboI	GATC	8 cut(s)	279, 396, 525, 594, 624, 882, 955, 1006
MboII	GAAGA	6 cut(s)	63, 171, 238, 249, 266, 403
MflI	RGATCY	1 cut(s)	594
MhlI	GDGCHC	1 cut(s)	992
MluCI	AATT	8 cut(s)	79, 352, 424, 483, 516, 611, 676, 943
Mly113I	GGCGCC	1 cut(s)	20
MlyI	GAGTC	1 cut(s)	72
MseI	TTAA	1 cut(s)	774
MslI	CAYNNNNRTG	2 cut(s)	194, 783
MspA1I	CMGCKG	1 cut(s)	490
MspI	CCGG	2 cut(s)	904, 992
MspR9I	CCNGG	1 cut(s)	992
MvnI	CGCG	1 cut(s)	490
MwoI	GCNNNNNNNGC	4 cut(s)	26, 581, 947, 971
NarI	GGCGCC	1 cut(s)	20
NciI	CCSGG	1 cut(s)	992
NcoI	CCATGG	1 cut(s)	207
NdeII	GATC	8 cut(s)	279, 396, 525, 594, 624, 882, 955, 1006
NlaIII	CATG	7 cut(s)	19, 211, 389, 625, 685, 770, 927
NlaIV	GGNNCC	3 cut(s)	21, 565, 810
NmuCI	GTSAC	1 cut(s)	684
PagI	TCATGA	1 cut(s)	621
PaqCI	CACCTGC	1 cut(s)	836
PfeI	GAWTC	2 cut(s)	176, 694
PkrI	GCNGC	6 cut(s)	24, 577, 757, 765, 909, 952
PleI	GAGTC	1 cut(s)	71
PluTI	GGCGCC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	71
PsiI	TTATAA	1 cut(s)	521
PspEI	GGTNACC	1 cut(s)	826
PspN4I	GGNNCC	3 cut(s)	21, 565, 810
PspPI	GGNCC	1 cut(s)	809
PsrI	GAACNNNNNNTAC	2 cut(s)	373, 405
PsuI	RGATCY	1 cut(s)	594
RsaI	GTAC	2 cut(s)	9, 331
RsaNI	GTAC	2 cut(s)	8, 330
RseI	CAYNNNNRTG	2 cut(s)	194, 783
SacII	CCGCGG	1 cut(s)	491
SaqAI	TTAA	1 cut(s)	774
SatI	GCNGC	6 cut(s)	23, 576, 756, 764, 908, 951
Sau3AI	GATC	8 cut(s)	279, 396, 525, 594, 624, 882, 955, 1006
Sau96I	GGNCC	1 cut(s)	809
ScaI	AGTACT	1 cut(s)	9
SchI	GAGTC	1 cut(s)	72
ScrFI	CCNGG	1 cut(s)	992
SduI	GDGCHC	1 cut(s)	992
SfoI	GGCGCC	1 cut(s)	21
Sfr303I	CCGCGG	1 cut(s)	491
SgrBI	CCGCGG	1 cut(s)	491
SinI	GGWCC	1 cut(s)	809
SmiMI	CAYNNNNRTG	2 cut(s)	194, 783
SmlI	CTYRAG	1 cut(s)	931
SmoI	CTYRAG	1 cut(s)	931
Sse9I	AATT	8 cut(s)	79, 352, 424, 483, 516, 611, 676, 943
SsiI	CCGC	8 cut(s)	23, 444, 488, 490, 950, 953, 974, 1013
SspDI	GGCGCC	1 cut(s)	19
SspMI	CTAG	4 cut(s)	152, 689, 701, 728
StyD4I	CCNGG	1 cut(s)	990
StyI	CCWWGG	2 cut(s)	151, 207
TaaI	ACNGT	3 cut(s)	343, 605, 634
TaiI	ACGT	2 cut(s)	439, 999
TasI	AATT	8 cut(s)	79, 352, 424, 483, 516, 611, 676, 943
TatI	WGTACW	1 cut(s)	7
TauI	GCSGC	2 cut(s)	25, 953
TfiI	GAWTC	2 cut(s)	176, 694
Tru1I	TTAA	1 cut(s)	774
Tru9I	TTAA	1 cut(s)	774
TscAI	CASTG	3 cut(s)	126, 228, 591
TseFI	GTSAC	1 cut(s)	684
TseI	GCWGC	4 cut(s)	575, 755, 763, 907
Tsp45I	GTSAC	1 cut(s)	684
TspDTI	ATGAA	2 cut(s)	123, 670
TspRI	CASTG	3 cut(s)	126, 228, 591
VpaK11BI	GGWCC	1 cut(s)	809
XapI	RAATTY	1 cut(s)	943
XmaJI	CCTAGG	1 cut(s)	151
XspI	CTAG	4 cut(s)	152, 689, 701, 728
ZraI	GACGTC	2 cut(s)	437, 997
ZrmI	AGTACT	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.