Rmu_co8300459.1_g000001

Nodulin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8300459.1
OG0002941
Physical Location & Seq
Forward (+)
40 .. 893
854 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8300459.1_g000001.1.cds

Sequence Viewer

Length: 360 bp
atgctcggagtggctaatgatatcggggaaaacgttggacttgttcctgggattgcttccaacaagctcccaccttggatgatactttcgattggggccttcgcttgtttctttggttacggtgtgctctggctcgctgtcagccgtacagttctgtccttgccttattggttgttatggattgctctttgtgttgctactaatagtagtgcttggtttaccacggctgttcttgtgaccaatatgaggaacttccctgttagtcgtggaactgttgcaggcattctgaaaggttatgggggtctcagtgcagctgtgtttacagaagtttatagcgtactgcttcgtaattcatcttct
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1 Nodulin-like

Protein Analysis

120

Amino Acids

12.79

Weight (kDa)

9.18

Isoelectric Point (pI)

33.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 33
AfaI GTAC 2 cut(s) 148, 339
AfiI CCNNNNNNNGG 1 cut(s) 246
AjnI CCWGG 1 cut(s) 46
AluBI AGCT 2 cut(s) 67, 314
AluI AGCT 2 cut(s) 67, 314
Alw21I GWGCWC 1 cut(s) 129
Alw26I GTCTC 1 cut(s) 308
AoxI GGCC 1 cut(s) 96
ApeKI GCWGC 1 cut(s) 311
AspS9I GGNCC 1 cut(s) 96
BarI GAAGNNNNNNTAC 1 cut(s) 340
Bbv12I GWGCWC 1 cut(s) 129
BbvI GCAGC 1 cut(s) 323
BceAI ACGGC 2 cut(s) 129, 240
BciT130I CCWGG 1 cut(s) 48
BcoDI GTCTC 1 cut(s) 308
BisI GCNGC 1 cut(s) 312
BlsI GCNGC 1 cut(s) 313
Bme1390I CCNGG 1 cut(s) 48
BmgT120I GGNCC 1 cut(s) 96
BmiI GGNNCC 1 cut(s) 97
BmrFI CCNGG 1 cut(s) 48
BsaI GGTCTC 1 cut(s) 308
BsaJI CCNNGG 3 cut(s) 47, 74, 222
Bsc4I CCNNNNNNNGG 1 cut(s) 246
BseBI CCWGG 1 cut(s) 48
BseDI CCNNGG 3 cut(s) 47, 74, 222
BseGI GGATG 1 cut(s) 84
BseLI CCNNNNNNNGG 1 cut(s) 246
BseMII CTCAG 1 cut(s) 319
BseXI GCAGC 1 cut(s) 323
BsgI GTGCAG 1 cut(s) 330
BshFI GGCC 1 cut(s) 98
BsiHKAI GWGCWC 1 cut(s) 129
BslI CCNNNNNNNGG 1 cut(s) 246
BsmAI GTCTC 1 cut(s) 308
BsmI GAATGC 1 cut(s) 282
BsnI GGCC 1 cut(s) 98
Bso31I GGTCTC 1 cut(s) 308
Bsp1286I GDGCHC 1 cut(s) 129
BspANI GGCC 1 cut(s) 98
BspCNI CTCAG 1 cut(s) 318
BspLI GGNNCC 1 cut(s) 97
BspTNI GGTCTC 1 cut(s) 308
BssECI CCNNGG 3 cut(s) 47, 74, 222
BssT1I CCWWGG 1 cut(s) 74
Bst2UI CCWGG 1 cut(s) 48
Bst4CI ACNGT 3 cut(s) 122, 151, 274
BstC8I GCNNGC 2 cut(s) 135, 280
BstDEI CTNAG 1 cut(s) 305
BstDSI CCRYGG 1 cut(s) 222
BstF5I GGATG 1 cut(s) 84
BstMAI GTCTC 1 cut(s) 308
BstNI CCWGG 1 cut(s) 48
BstSCI CCNGG 1 cut(s) 46
BstV1I GCAGC 1 cut(s) 323
BsuRI GGCC 1 cut(s) 98
BtgI CCRYGG 1 cut(s) 222
BtsCI GGATG 1 cut(s) 84
BtsIMutI CAGTG 1 cut(s) 313
Cac8I GCNNGC 2 cut(s) 135, 280
Cfr13I GGNCC 1 cut(s) 96
Csp6I GTAC 2 cut(s) 147, 338
CviJI RGCY 7 cut(s) 14, 67, 98, 133, 144, 227, 314
CviKI_1 RGCY 7 cut(s) 14, 67, 98, 133, 144, 227, 314
CviQI GTAC 2 cut(s) 147, 338
DdeI CTNAG 1 cut(s) 305
Eco130I CCWWGG 1 cut(s) 74
Eco31I GGTCTC 1 cut(s) 308
Eco32I GATATC 1 cut(s) 22
EcoO109I RGGNCCY 1 cut(s) 96
EcoRII CCWGG 1 cut(s) 46
EcoRV GATATC 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 74
ErhI CCWWGG 1 cut(s) 74
FaiI YATR 4 cut(s) 178, 245, 297, 333
Fnu4HI GCNGC 1 cut(s) 312
FokI GGATG 1 cut(s) 91
Fsp4HI GCNGC 1 cut(s) 312
GluI GCNGC 1 cut(s) 312
HaeIII GGCC 1 cut(s) 98
Hpy166II GTNNAC 2 cut(s) 219, 321
Hpy188I TCNGA 2 cut(s) 8, 288
Hpy8I GTNNAC 2 cut(s) 219, 321
HpyAV CCTTC 1 cut(s) 109
HpyCH4III ACNGT 3 cut(s) 122, 151, 274
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 2 cut(s) 278, 311
HpyF3I CTNAG 1 cut(s) 305
HpySE526I ACGT 1 cut(s) 33
LmnI GCTCC 1 cut(s) 72
LpnPI CCDG 5 cut(s) 33, 60, 115, 264, 270
Lsp1109I GCAGC 1 cut(s) 323
MaeII ACGT 1 cut(s) 33
MaeIII GTNAC 2 cut(s) 116, 235
MboII GAAGA 1 cut(s) 348
MhlI GDGCHC 1 cut(s) 129
MluCI AATT 1 cut(s) 349
MmeI TCCRAC 2 cut(s) 16, 84
MnlI CCTC 1 cut(s) 240
MspA1I CMGCKG 1 cut(s) 314
MspR9I CCNGG 1 cut(s) 48
Mva1269I GAATGC 1 cut(s) 282
MvaI CCWGG 1 cut(s) 48
NlaIV GGNNCC 1 cut(s) 97
NmuCI GTSAC 1 cut(s) 235
PcsI WCGNNNNNNNCGW 1 cut(s) 30
PctI GAATGC 1 cut(s) 282
PkrI GCNGC 1 cut(s) 313
Psp1406I AACGTT 1 cut(s) 33
Psp6I CCWGG 1 cut(s) 46
PspGI CCWGG 1 cut(s) 46
PspN4I GGNNCC 1 cut(s) 97
PspPI GGNCC 1 cut(s) 96
PvuII CAGCTG 1 cut(s) 314
RsaI GTAC 2 cut(s) 148, 339
RsaNI GTAC 2 cut(s) 147, 338
SatI GCNGC 1 cut(s) 312
Sau96I GGNCC 1 cut(s) 96
ScrFI CCNGG 1 cut(s) 48
SduI GDGCHC 1 cut(s) 129
SetI ASST 5 cut(s) 36, 69, 76, 295, 316
Sse9I AATT 1 cut(s) 349
StyD4I CCNGG 1 cut(s) 46
StyI CCWWGG 1 cut(s) 74
TaaI ACNGT 3 cut(s) 122, 151, 274
TaiI ACGT 1 cut(s) 36
TaqI TCGA 1 cut(s) 89
TasI AATT 1 cut(s) 349
TscAI CASTG 1 cut(s) 313
TseFI GTSAC 1 cut(s) 235
TseI GCWGC 1 cut(s) 311
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 1 cut(s) 342
TspRI CASTG 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.