Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000418.1

Orthogroup ID

OG0002941

Physical Location & Seq

Genomic Coordinates Reverse (-)

991 .. 2845

Gene Structure 1855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000418.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

atgctatggcagttgtttatcacaattctcattgccacgaatagcaatgcttggtttggcacagctgtgcttgtcaccaacatgaggaacttccctctcagtagaggcactgttgctggcattctcaagggctatattgggattagtgctgcagtttatacagtggtatacagtttggtgcttaaagagtctgccttaaatctattgctgttccttgctcttgggcttcctgttttgtgtttggccttgatgtactttattcggccatgtactccagcttctggagaagagtcttcagagcatggccattttctcttcactcaagttgtcagtgttatgcttgcagtctatcttctcataatcacagtagtaaaccagatgatatcccttagtcaaacagtttcttatattttgattgctattgtggttatccttctgctgtccccccttgcaattcctgtcaaaatgacattatttcctgtaagggaccgaattgattcttcagaccaacttgctccaccagaaggtaatgcaacccaaacagatcctttgttgacaccatcttcatcagctattaatcttggaagttttcatgaggctgatgattcttcagacgtggaaactcttcttgctattggggaaggggcagtgaggaagaagaaaaggagacctaagaggggagaggattttaagttccaagaagcttttataaaggctgatttctggctgctttggtttgtatattttcttggggtaggttcaggagtaacagtgctcaataatttaagccagattggggttgcattaggcagcgatgatacgacaatattgttgtctctcttcagcttttgcaattttgtgggtcgtttgggttcaggtgttgtttctgaacactttgtcaagaactatacacttcctcgtacattttggatgacatgtgcacatatattgatgatcctatcgttcattttgtatgcgttagatctcagtggtactctctatgctgcaactactctgcttggtatctgctatggtgttcagtattctatgatggttccaactgtctccgaactttttggattgaaacattttggtataaattacggcttcatgttaattggaaatcctattggtgcagttcttttttcagttcttcttgctggtaatttatatgatgctgaagctgctaaacaaggaacctccacctgcataggtgcagactgtttcaggatcacatttatagttttagccggcgtctgtgggttgggcaccatcttgagcataattttgacagttagagtacgtcccgtttaccaaatgctttatgccgggggttctttccgtttgcctgctagtgcaatccactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nodulin-like

Protein Analysis

455

Amino Acids

49.41

Weight (kDa)

7.03

Isoelectric Point (pI)

29.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80530
fragaria_vesca	FvH4_1g01960 FvH4_6g29100 FvH4_6g29100
malus_domestica	MD00G1182300.v1.1 MD02G1017800.v1.1 MD02G1017900.v1.1 MD17G1217900.v1.1
prunus_persica	Prupe.3G093500_v2.0.a1 Prupe.3G093500_v2.0.a1 Prupe.3G093500_v2.0.a1 Prupe.7G257000_v2.0.a1 Prupe.7G257000_v2.0.a1
pyrus_communis	pycom02g01580 pycom02g01590 pycom16g23280 pycom17g22210
rosa_chinensis	RchiOBHm_Chr2g0086971 RchiOBHm_Chr2g0134291
rosa_laevigata	RLG00000015819 RLG00000019384
rosa_multiflora	Rmu_co8300459.1_g000001 Rmu_co8420697.1_g000001 Rmu_sc0000418.1_g000001 Rmu_sc0000418.1_g000002 Rmu_sc0014586.1_g000007
rosa_roxburghii	Rroxscaffold_2G00110360 Rroxscaffold_2G00153980
rosa_rugosa	Rorug01G0471200 Rorug02G0315800 Rorug02G0315900
rosa_samantha	Rh2AG023900 Rh2AG368600 Rh2BG024400 Rh2CG024600 Rh2DG024500
rosa_wichuraiana	Rw2G001880 Rw2G030030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	710
AarI	CACCTGC	1 cut(s)	1214
Acc36I	ACCTGC	1 cut(s)	1214
AccB1I	GGYRCC	1 cut(s)	1268
AccB7I	CCANNNNNTGG	1 cut(s)	281
AccI	GTMKAC	1 cut(s)	168
AclWI	GGATC	3 cut(s)	539, 949, 1238
AcoI	YGGCCR	2 cut(s)	263, 304
AcuI	CTGAAG	5 cut(s)	279, 486, 594, 826, 1200
AcyI	GRCGYC	1 cut(s)	1254
AfaI	GTAC	5 cut(s)	254, 271, 922, 994, 1302
AfiI	CCNNNNNNNGG	5 cut(s)	84, 281, 524, 677, 796
AflIII	ACRYGT	1 cut(s)	935
AgsI	TTSAA	1 cut(s)	1084
AjiI	CACGTC	1 cut(s)	616
AleI	CACNNNNGTG	1 cut(s)	65
AloI	GAACNNNNNNTCC	2 cut(s)	677, 709
AluBI	AGCT	6 cut(s)	65, 278, 572, 704, 846, 1184
AluI	AGCT	6 cut(s)	65, 278, 572, 704, 846, 1184
Alw21I	GWGCWC	2 cut(s)	777, 943
Alw26I	GTCTC	3 cut(s)	661, 840, 1069
Alw44I	GTGCAC	1 cut(s)	939
AlwI	GGATC	3 cut(s)	539, 949, 1238
AlwNI	CAGNNNCTG	1 cut(s)	281
AoxI	GGCC	3 cut(s)	243, 263, 304
ApaLI	GTGCAC	1 cut(s)	939
ApeKI	GCWGC	5 cut(s)	149, 727, 810, 1004, 1184
AseI	ATTAAT	1 cut(s)	576
Asp700I	GAANNNNTTC	2 cut(s)	496, 624
AspS9I	GGNCC	1 cut(s)	487
AsuC2I	CCSGG	1 cut(s)	1330
AsuHPI	GGTGA	1 cut(s)	67
AvaII	GGWCC	1 cut(s)	487
BaeGI	GKGCMC	2 cut(s)	943, 1271
BalI	TGGCCA	1 cut(s)	306
BanI	GGYRCC	1 cut(s)	1268
BarI	GAAGNNNNNNTAC	2 cut(s)	262, 294
BbsI	GAAGAC	1 cut(s)	285
Bbv12I	GWGCWC	2 cut(s)	777, 943
BbvI	GCAGC	5 cut(s)	136, 714, 822, 991, 1171
BccI	CCATC	3 cut(s)	568, 1045, 1280
BceAI	ACGGC	1 cut(s)	1120
BcnI	CCSGG	1 cut(s)	1330
BcoDI	GTCTC	3 cut(s)	661, 840, 1069
BfaI	CTAG	1 cut(s)	1353
BfmI	CTRYAG	1 cut(s)	150
BfuAI	ACCTGC	1 cut(s)	1214
BglII	AGATCT	1 cut(s)	982
BisI	GCNGC	5 cut(s)	150, 728, 811, 1005, 1185
BlsI	GCNGC	5 cut(s)	151, 729, 812, 1006, 1186
Bme1390I	CCNGG	1 cut(s)	1330
Bme18I	GGWCC	1 cut(s)	487
BmgBI	CACGTC	1 cut(s)	616
BmgT120I	GGNCC	1 cut(s)	487
BmiI	GGNNCC	4 cut(s)	488, 1056, 1198, 1270
BmrFI	CCNGG	1 cut(s)	1330
BmsI	GCATC	1 cut(s)	1165
BpiI	GAAGAC	1 cut(s)	285
BpmI	CTGGAG	2 cut(s)	258, 303
BpuEI	CTTGAG	3 cut(s)	110, 306, 1297
BpuMI	CCSGG	1 cut(s)	1330
BsaHI	GRCGYC	1 cut(s)	1254
BsaI	GGTCTC	1 cut(s)	661
BsaJI	CCNNGG	1 cut(s)	1329
BsaXI	ACNNNNNCTCC	2 cut(s)	756, 786
Bsc4I	CCNNNNNNNGG	5 cut(s)	84, 281, 524, 677, 796
Bse118I	RCCGGY	1 cut(s)	1250
Bse3DI	GCAATG	2 cut(s)	30, 52
BseDI	CCNNGG	1 cut(s)	1329
BseGI	GGATG	1 cut(s)	936
BseLI	CCNNNNNNNGG	5 cut(s)	84, 281, 524, 677, 796
BseMI	GCAATG	2 cut(s)	30, 52
BseMII	CTCAG	2 cut(s)	112, 1000
BseSI	GKGCMC	2 cut(s)	943, 1271
BseXI	GCAGC	5 cut(s)	136, 714, 822, 991, 1171
BsgI	GTGCAG	2 cut(s)	1155, 1236
BshFI	GGCC	3 cut(s)	245, 265, 306
BshNI	GGYRCC	1 cut(s)	1268
BsiHKAI	GWGCWC	2 cut(s)	777, 943
BsiSI	CCGG	2 cut(s)	1251, 1329
BslFI	GGGAC	3 cut(s)	427, 500, 1290
BslI	CCNNNNNNNGG	5 cut(s)	84, 281, 524, 677, 796
BsmAI	GTCTC	3 cut(s)	661, 840, 1069
BsmFI	GGGAC	3 cut(s)	427, 500, 1290
BsmI	GAATGC	1 cut(s)	120
BsnI	GGCC	3 cut(s)	245, 265, 306
Bso31I	GGTCTC	1 cut(s)	661
Bsp1286I	GDGCHC	3 cut(s)	777, 943, 1271
Bsp143I	GATC	4 cut(s)	544, 954, 982, 1230
BspANI	GGCC	3 cut(s)	245, 265, 306
BspCNI	CTCAG	2 cut(s)	111, 999
BspHI	TCATGA	1 cut(s)	592
BspLI	GGNNCC	4 cut(s)	488, 1056, 1198, 1270
BspMAI	CTGCAG	1 cut(s)	154
BspMI	ACCTGC	1 cut(s)	1214
BspPI	GGATC	3 cut(s)	539, 949, 1238
BspT107I	GGYRCC	1 cut(s)	1268
BspTNI	GGTCTC	1 cut(s)	661
BsrDI	GCAATG	2 cut(s)	30, 52
BsrFI	RCCGGY	1 cut(s)	1250
BssAI	RCCGGY	1 cut(s)	1250
BssECI	CCNNGG	1 cut(s)	1329
BssMI	GATC	4 cut(s)	544, 954, 982, 1230
BssNAI	GTATAC	1 cut(s)	169
BssNI	GRCGYC	1 cut(s)	1254
Bst1107I	GTATAC	1 cut(s)	169
Bst4CI	ACNGT	9 cut(s)	112, 163, 173, 367, 400, 772, 1063, 1223, 1294
Bst6I	CTCTTC	4 cut(s)	282, 320, 630, 845
BstACI	GRCGYC	1 cut(s)	1254
BstC8I	GCNNGC	4 cut(s)	118, 342, 1252, 1350
BstDEI	CTNAG	4 cut(s)	98, 389, 672, 986
BstF5I	GGATG	1 cut(s)	936
BstKTI	GATC	4 cut(s)	547, 957, 985, 1233
BstMAI	GTCTC	3 cut(s)	661, 840, 1069
BstMBI	GATC	4 cut(s)	544, 954, 982, 1230
BstMWI	GCNNNNNNNGC	1 cut(s)	1184
BstNSI	RCATGY	1 cut(s)	939
BstSCI	CCNGG	1 cut(s)	1328
BstSFI	CTRYAG	1 cut(s)	150
BstSLI	GKGCMC	2 cut(s)	943, 1271
BstV1I	GCAGC	5 cut(s)	136, 714, 822, 991, 1171
BstV2I	GAAGAC	1 cut(s)	285
BstX2I	RGATCY	2 cut(s)	544, 982
BstYI	RGATCY	2 cut(s)	544, 982
BstZ17I	GTATAC	1 cut(s)	169
BsuRI	GGCC	3 cut(s)	245, 265, 306
BtgZI	GCGATG	1 cut(s)	828
BtrI	CACGTC	1 cut(s)	616
BtsCI	GGATG	1 cut(s)	936
BtsI	GCAGTG	1 cut(s)	654
BtsIMutI	CAGTG	7 cut(s)	108, 168, 337, 654, 777, 994, 1363
BveI	ACCTGC	1 cut(s)	1214
Cac8I	GCNNGC	4 cut(s)	118, 342, 1252, 1350
CaiI	CAGNNNCTG	1 cut(s)	281
CciI	TCATGA	1 cut(s)	592
Cfr10I	RCCGGY	1 cut(s)	1250
Cfr13I	GGNCC	1 cut(s)	487
CseI	GACGC	1 cut(s)	1243
Csp6I	GTAC	5 cut(s)	253, 270, 921, 993, 1301
CviAII	CATG	6 cut(s)	82, 267, 302, 593, 936, 1111
CviQI	GTAC	5 cut(s)	253, 270, 921, 993, 1301
DdeI	CTNAG	4 cut(s)	98, 389, 672, 986
DpnI	GATC	4 cut(s)	546, 956, 984, 1232
DpnII	GATC	4 cut(s)	544, 954, 982, 1230
EaeI	YGGCCR	2 cut(s)	263, 304
Eam1104I	CTCTTC	4 cut(s)	282, 320, 630, 845
EarI	CTCTTC	4 cut(s)	282, 320, 630, 845
Eco31I	GGTCTC	1 cut(s)	661
Eco32I	GATATC	1 cut(s)	384
Eco47I	GGWCC	1 cut(s)	487
Eco57I	CTGAAG	5 cut(s)	279, 486, 594, 826, 1200
EcoRV	GATATC	1 cut(s)	384
FaeI	CATG	6 cut(s)	85, 270, 305, 596, 939, 1114
FaqI	GGGAC	3 cut(s)	427, 500, 1290
FatI	CATG	6 cut(s)	81, 266, 301, 592, 935, 1110
FblI	GTMKAC	1 cut(s)	168
Fnu4HI	GCNGC	5 cut(s)	150, 728, 811, 1005, 1185
FokI	GGATG	1 cut(s)	943
Fsp4HI	GCNGC	5 cut(s)	150, 728, 811, 1005, 1185
FspBI	CTAG	1 cut(s)	1353
GluI	GCNGC	5 cut(s)	150, 728, 811, 1005, 1185
GsuI	CTGGAG	2 cut(s)	258, 303
HaeIII	GGCC	3 cut(s)	245, 265, 306
HapII	CCGG	2 cut(s)	1251, 1329
HgaI	GACGC	1 cut(s)	1243
Hin1I	GRCGYC	1 cut(s)	1254
Hin1II	CATG	6 cut(s)	85, 270, 305, 596, 939, 1114
HincII	GTYRAC	1 cut(s)	555
HindII	GTYRAC	1 cut(s)	555
HindIII	AAGCTT	1 cut(s)	702
HinfI	GANTC	4 cut(s)	188, 290, 497, 605
HpaII	CCGG	2 cut(s)	1251, 1329
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	5 cut(s)	169, 373, 555, 941, 1312
Hpy188I	TCNGA	5 cut(s)	298, 505, 613, 889, 1069
Hpy188III	TCNNGA	6 cut(s)	282, 593, 762, 901, 1228, 1276
Hpy8I	GTNNAC	5 cut(s)	169, 373, 555, 941, 1312
HpyAV	CCTTC	3 cut(s)	443, 518, 635
HpyCH4III	ACNGT	9 cut(s)	112, 163, 173, 367, 400, 772, 1063, 1223, 1294
HpyCH4IV	ACGT	2 cut(s)	615, 1303
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1184
HpyF3I	CTNAG	4 cut(s)	98, 389, 672, 986
HpySE526I	ACGT	2 cut(s)	615, 1303
Hsp92I	GRCGYC	1 cut(s)	1254
Hsp92II	CATG	6 cut(s)	85, 270, 305, 596, 939, 1114
KroI	GCCGGC	1 cut(s)	1250
KroNI	GCCGGC	1 cut(s)	1252
Kzo9I	GATC	4 cut(s)	544, 954, 982, 1230
LmnI	GCTCC	1 cut(s)	520
Lsp1109I	GCAGC	5 cut(s)	136, 714, 822, 991, 1171
LweI	GCATC	1 cut(s)	1165
MaeI	CTAG	1 cut(s)	1353
MaeII	ACGT	2 cut(s)	615, 1303
MaeIII	GTNAC	2 cut(s)	73, 766
MalI	GATC	4 cut(s)	546, 956, 984, 1232
MboI	GATC	4 cut(s)	544, 954, 982, 1230
MflI	RGATCY	2 cut(s)	544, 982
MhlI	GDGCHC	3 cut(s)	777, 943, 1271
MlsI	TGGCCA	1 cut(s)	306
MluCI	AATT	9 cut(s)	24, 453, 492, 781, 853, 1099, 1116, 1165, 1284
MluNI	TGGCCA	1 cut(s)	306
MlyI	GAGTC	2 cut(s)	197, 299
MmeI	TCCRAC	1 cut(s)	1082
MnlI	CCTC	9 cut(s)	78, 98, 105, 589, 645, 669, 676, 927, 1210
Mox20I	TGGCCA	1 cut(s)	306
MroNI	GCCGGC	1 cut(s)	1250
MroXI	GAANNNNTTC	2 cut(s)	496, 624
MscI	TGGCCA	1 cut(s)	306
MseI	TTAA	6 cut(s)	183, 197, 576, 690, 785, 1115
MslI	CAYNNNNRTG	2 cut(s)	65, 80
Msp20I	TGGCCA	1 cut(s)	306
MspA1I	CMGCKG	1 cut(s)	65
MspI	CCGG	2 cut(s)	1251, 1329
MspR9I	CCNGG	1 cut(s)	1330
Mva1269I	GAATGC	1 cut(s)	120
MwoI	GCNNNNNNNGC	1 cut(s)	1184
NaeI	GCCGGC	1 cut(s)	1252
NciI	CCSGG	1 cut(s)	1330
NdeII	GATC	4 cut(s)	544, 954, 982, 1230
NgoMIV	GCCGGC	1 cut(s)	1250
NlaIII	CATG	6 cut(s)	85, 270, 305, 596, 939, 1114
NlaIV	GGNNCC	4 cut(s)	488, 1056, 1198, 1270
NmuCI	GTSAC	1 cut(s)	73
NspI	RCATGY	1 cut(s)	939
OliI	CACNNNNGTG	1 cut(s)	65
PagI	TCATGA	1 cut(s)	592
PaqCI	CACCTGC	1 cut(s)	1214
PciI	ACATGT	1 cut(s)	935
PctI	GAATGC	1 cut(s)	120
PdiI	GCCGGC	1 cut(s)	1252
PdmI	GAANNNNTTC	2 cut(s)	496, 624
PfeI	GAWTC	2 cut(s)	497, 605
PflMI	CCANNNNNTGG	1 cut(s)	281
PkrI	GCNGC	5 cut(s)	151, 729, 812, 1006, 1186
PleI	GAGTC	2 cut(s)	196, 298
PpsI	GAGTC	2 cut(s)	196, 298
PscI	ACATGT	1 cut(s)	935
PshBI	ATTAAT	1 cut(s)	576
PsiI	TTATAA	1 cut(s)	710
PspN4I	GGNNCC	4 cut(s)	488, 1056, 1198, 1270
PspPI	GGNCC	1 cut(s)	487
PstI	CTGCAG	1 cut(s)	154
PstNI	CAGNNNCTG	1 cut(s)	281
PsuI	RGATCY	2 cut(s)	544, 982
PvuII	CAGCTG	1 cut(s)	65
RsaI	GTAC	5 cut(s)	254, 271, 922, 994, 1302
RsaNI	GTAC	5 cut(s)	253, 270, 921, 993, 1301
RseI	CAYNNNNRTG	2 cut(s)	65, 80
SaqAI	TTAA	6 cut(s)	183, 197, 576, 690, 785, 1115
SatI	GCNGC	5 cut(s)	150, 728, 811, 1005, 1185
Sau3AI	GATC	4 cut(s)	544, 954, 982, 1230
Sau96I	GGNCC	1 cut(s)	487
SchI	GAGTC	2 cut(s)	197, 299
ScrFI	CCNGG	1 cut(s)	1330
SduI	GDGCHC	3 cut(s)	777, 943, 1271
SfaNI	GCATC	1 cut(s)	1165
SfcI	CTRYAG	1 cut(s)	150
SinI	GGWCC	1 cut(s)	487
SmiMI	CAYNNNNRTG	2 cut(s)	65, 80
SmlI	CTYRAG	3 cut(s)	125, 321, 1276
SmoI	CTYRAG	3 cut(s)	125, 321, 1276
Sse9I	AATT	9 cut(s)	24, 453, 492, 781, 853, 1099, 1116, 1165, 1284
SspI	AATATT	1 cut(s)	828
SspMI	CTAG	1 cut(s)	1353
StyD4I	CCNGG	1 cut(s)	1328
TaaI	ACNGT	9 cut(s)	112, 163, 173, 367, 400, 772, 1063, 1223, 1294
TaiI	ACGT	2 cut(s)	618, 1306
TaqII	GACCGA	1 cut(s)	504
TasI	AATT	9 cut(s)	24, 453, 492, 781, 853, 1099, 1116, 1165, 1284
TatI	WGTACW	2 cut(s)	252, 269
TfiI	GAWTC	2 cut(s)	497, 605
Tru1I	TTAA	6 cut(s)	183, 197, 576, 690, 785, 1115
Tru9I	TTAA	6 cut(s)	183, 197, 576, 690, 785, 1115
TscAI	CASTG	6 cut(s)	115, 168, 337, 654, 777, 994
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	5 cut(s)	149, 727, 810, 1004, 1184
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	4 cut(s)	555, 581, 955, 1099
TspGWI	ACGGA	1 cut(s)	1331
TspRI	CASTG	6 cut(s)	115, 168, 337, 654, 777, 994
Van91I	CCANNNNNTGG	1 cut(s)	281
VneI	GTGCAC	1 cut(s)	939
VpaK11BI	GGWCC	1 cut(s)	487
VspI	ATTAAT	1 cut(s)	576
XceI	RCATGY	1 cut(s)	939
XmiI	GTMKAC	1 cut(s)	168
XmnI	GAANNNNTTC	2 cut(s)	496, 624
XspI	CTAG	1 cut(s)	1353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.