Rh2CG024600

Nodulin-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Forward (+)
1889086 .. 1891847
2762 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG024600.1

Sequence Viewer

Length: 1383 bp
ATGTTGCAGTTATGGATTGCTCTTTGTGTTGCTACTAATAGTAGTGCTTGGTTTTCCACGGCTGTTCTTGTGACCAATATGAGGAACTTCCCTGTTAGTCGTGGAACTGTTGCAGGCATTCTGAAAGGTTATGGGGGTCTCAGTGCAGCTGTGTTTACAGAAGTTTATAGCGTACTGCTTCGTAATTCATCTTCTAAGCTTCTACTCTTCCTTACACTCGGGGTTCCTCTCCTGTGTTTCATTCTGATGTATTTAGTTAGGCCTTGTACGCCGGCTAATAGTGAAGGCTCGGTGGAGCGTGGTCACTTTCTCTTCATCCAAGCTGCGAGTGTGGTGGTTGGATTATATGTGCTCACAACTACAATATTGGATGATTCCTTTTCCTTGAGTGCTCCGATTACCTACAGTTTTGTTGTCATAATGGTAGTACTTCTCATGGCGCCGCTTGCTATCCCTCTAAAAATGACATTTTATCCCACAAGAGTCAGCTCTTCTGATAATTTGAATAATGAGGATAGCAATGCAGATGAAACTGAACCACTGCTGAAGTCATCTTTATCAACAACAAGCCTAGGGAGTTTTCGTGAAGGAAATGATTCTTCATCTGACATAGCTATGCTTCTCGCCGTGGGTGAGGGGGCAGTGAAGAGAAAGAGAAGACCCAAAAGAGGGGAAGATTTCAAGTTTACTGAAGCGGTGATCAAGGCCGACTTCTGGCTTCTGTTTTTGGTTTATTTTGTAGGGGTTGGTACTGGGGTAACTGTTCTGAATAATTTAGCTCAAATAGGTATTGCACAAGGAACGCATGATACCACGATCTTGTTGTCTCTCTTCAGCTTTGGCAATTTCGTGGGACGTCTTGGCGGAGGAGTTGTTTCTGAACATTTTGTCAAGACAAAAACAATTCCGCGGACATTTTGGATGACTTGCACTCAAATTATAATGATCTTTATCTATCTGCTCTTTGCTTCTGCCATCAAAGGAACCCTTTATGCTGCGACTGCACTGCTTGGGATCTGCTACGGTGTCCAGTTTTCTATCATGATCCCGACCGTCTCTGAACTCTTTGGATTGAGGCATTTTGGCATATTCTACAATTTCATGTCACTAGGGAATCCTCTAGGCGCATTTCTTTTTTCAGGTCTCCTAGCAGGATACATATACGATAATGAGGCAGCAAAGCAGCATGGTCTTAATCATCTTTATGGAACAAATGTCTCCTGCTTGGGTCCAGATTGCTTTAGGGTTACCTTCCTTGTTCTGGCAGGTGTCTCTGGTGTCGGCACAATCTTGAGCGTTGTTCTGTCTACTAGGATAAAGCCTGTTTATGAAATGCTTTATGCCGGTGGTTCCTTCAGAATTCCTCAGAATACAAATAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

460

Amino Acids

49.92

Weight (kDa)

8.74

Isoelectric Point (pI)

27.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nodulin-like PF06813 2 - 153 2.4e-42 Nodulin-like
NFD4_C PF23262 235 - 442 2.1e-25 NFD4, C-terminal domain
MFS_1 PF07690 249 - 438 1.1e-09 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 941
AarI CACCTGC 1 cut(s) 1256
AatII GACGTC 1 cut(s) 859
Acc36I ACCTGC 1 cut(s) 1256
AccB1I GGYRCC 1 cut(s) 439
AccI GTMKAC 1 cut(s) 1307
AccII CGCG 1 cut(s) 910
AciI CCGC 5 cut(s) 443, 695, 864, 908, 910
AclWI GGATC 2 cut(s) 1022, 1039
AcsI RAATTY 1 cut(s) 1359
AcuI CTGAAG 4 cut(s) 566, 711, 817, 1339
AcyI GRCGYC 2 cut(s) 440, 856
AfaI GTAC 4 cut(s) 174, 268, 429, 751
AfiI CCNNNNNNNGG 5 cut(s) 81, 668, 669, 714, 1261
AgsI TTSAA 2 cut(s) 505, 682
AluBI AGCT 7 cut(s) 149, 199, 323, 489, 614, 779, 837
AluI AGCT 7 cut(s) 149, 199, 323, 489, 614, 779, 837
Alw21I GWGCWC 2 cut(s) 354, 394
Alw26I GTCTC 6 cut(s) 143, 831, 1060, 1148, 1222, 1276
AlwI GGATC 2 cut(s) 1022, 1039
Ama87I CYCGRG 1 cut(s) 218
AoxI GGCC 2 cut(s) 260, 705
ApeKI GCWGC 5 cut(s) 146, 323, 995, 1175, 1183
ApoI RAATTY 1 cut(s) 1359
Asp700I GAANNNNTTC 1 cut(s) 595
AspA2I CCTAGG 1 cut(s) 571
AspLEI GCGC 2 cut(s) 442, 1127
AspS9I GGNCC 1 cut(s) 1229
AsuHPI GGTGA 2 cut(s) 644, 709
AvaI CYCGRG 1 cut(s) 218
AvaII GGWCC 1 cut(s) 1229
AvrII CCTAGG 1 cut(s) 571
BaeI ACNNNNGTAYC 2 cut(s) 741, 774
BanI GGYRCC 1 cut(s) 439
BarI GAAGNNNNNNTAC 2 cut(s) 175, 207
BbsI GAAGAC 1 cut(s) 664
Bbv12I GWGCWC 2 cut(s) 354, 394
BbvI GCAGC 5 cut(s) 158, 310, 982, 1187, 1195
BccI CCATC 1 cut(s) 983
BceAI ACGGC 2 cut(s) 75, 611
BcgI CGANNNNNNTGC 2 cut(s) 988, 1022
BciVI GTATCC 1 cut(s) 1148
BclI TGATCA 1 cut(s) 699
BcoDI GTCTC 6 cut(s) 143, 831, 1060, 1148, 1222, 1276
BfaI CTAG 5 cut(s) 572, 1109, 1121, 1148, 1311
BfmI CTRYAG 1 cut(s) 403
BfoI RGCGCY 1 cut(s) 443
BfuAI ACCTGC 1 cut(s) 1256
BfuI GTATCC 1 cut(s) 1148
BisI GCNGC 6 cut(s) 147, 324, 443, 996, 1176, 1184
BlnI CCTAGG 1 cut(s) 571
BlsI GCNGC 6 cut(s) 148, 325, 444, 997, 1177, 1185
BmcAI AGTACT 1 cut(s) 429
Bme18I GGWCC 1 cut(s) 1229
BmeT110I CYCGRG 1 cut(s) 218
BmgT120I GGNCC 1 cut(s) 1229
BmiI GGNNCC 5 cut(s) 225, 441, 985, 1230, 1351
BmrI ACTGGG 1 cut(s) 762
BmuI ACTGGG 1 cut(s) 762
BpiI GAAGAC 1 cut(s) 664
BpuEI CTTGAG 2 cut(s) 406, 1312
BsaBI GATNNNNATC 1 cut(s) 950
BsaHI GRCGYC 2 cut(s) 440, 856
BsaI GGTCTC 2 cut(s) 143, 1148
BsaJI CCNNGG 4 cut(s) 57, 571, 627, 908
BsaXI ACNNNNNCTCC 4 cut(s) 568, 598, 858, 888
Bsc4I CCNNNNNNNGG 5 cut(s) 81, 668, 669, 714, 1261
Bse118I RCCGGY 2 cut(s) 271, 1343
Bse1I ACTGG 2 cut(s) 757, 1030
Bse3DI GCAATG 1 cut(s) 526
Bse8I GATNNNNATC 1 cut(s) 950
BseDI CCNNGG 4 cut(s) 57, 571, 627, 908
BseGI GGATG 3 cut(s) 315, 376, 927
BseJI GATNNNNATC 1 cut(s) 950
BseLI CCNNNNNNNGG 5 cut(s) 81, 668, 669, 714, 1261
BseMI GCAATG 1 cut(s) 526
BseMII CTCAG 2 cut(s) 154, 1379
BseNI ACTGG 2 cut(s) 757, 1030
BseRI GAGGAG 1 cut(s) 882
BseXI GCAGC 5 cut(s) 158, 310, 982, 1187, 1195
BsgI GTGCAG 2 cut(s) 165, 987
Bsh1236I CGCG 1 cut(s) 910
Bsh1285I CGRYCG 1 cut(s) 1053
BshFI GGCC 2 cut(s) 262, 707
BshNI GGYRCC 1 cut(s) 439
BsiEI CGRYCG 1 cut(s) 1053
BsiHKAI GWGCWC 2 cut(s) 354, 394
BsiHKCI CYCGRG 1 cut(s) 218
BsiSI CCGG 2 cut(s) 272, 1344
BslFI GGGAC 1 cut(s) 867
BslI CCNNNNNNNGG 5 cut(s) 81, 668, 669, 714, 1261
BsmAI GTCTC 6 cut(s) 143, 831, 1060, 1148, 1222, 1276
BsmBI CGTCTC 1 cut(s) 1060
BsmFI GGGAC 1 cut(s) 867
BsmI GAATGC 1 cut(s) 117
BsnI GGCC 2 cut(s) 262, 707
Bso31I GGTCTC 2 cut(s) 143, 1148
BsoBI CYCGRG 1 cut(s) 218
Bsp1286I GDGCHC 2 cut(s) 354, 394
Bsp143I GATC 5 cut(s) 699, 816, 945, 1014, 1044
BspACI CCGC 5 cut(s) 443, 695, 864, 908, 910
BspANI GGCC 2 cut(s) 262, 707
BspCNI CTCAG 2 cut(s) 153, 1378
BspFNI CGCG 1 cut(s) 910
BspHI TCATGA 1 cut(s) 1041
BspLI GGNNCC 5 cut(s) 225, 441, 985, 1230, 1351
BspMI ACCTGC 1 cut(s) 1256
BspPI GGATC 2 cut(s) 1022, 1039
BspQI GCTCTTC 1 cut(s) 496
BspT107I GGYRCC 1 cut(s) 439
BspTNI GGTCTC 2 cut(s) 143, 1148
BsrDI GCAATG 1 cut(s) 526
BsrFI RCCGGY 2 cut(s) 271, 1343
BsrI ACTGG 2 cut(s) 757, 1030
BssAI RCCGGY 2 cut(s) 271, 1343
BssECI CCNNGG 4 cut(s) 57, 571, 627, 908
BssMI GATC 5 cut(s) 699, 816, 945, 1014, 1044
BssNI GRCGYC 2 cut(s) 440, 856
BssT1I CCWWGG 1 cut(s) 571
Bst4CI ACNGT 5 cut(s) 109, 407, 763, 1025, 1054
Bst6I CTCTTC 5 cut(s) 212, 317, 496, 641, 836
BstACI GRCGYC 2 cut(s) 440, 856
BstC8I GCNNGC 3 cut(s) 115, 273, 447
BstDEI CTNAG 3 cut(s) 140, 195, 1365
BstDSI CCRYGG 3 cut(s) 57, 627, 908
BstEII GGTNACC 1 cut(s) 1246
BstF5I GGATG 3 cut(s) 315, 376, 927
BstFNI CGCG 1 cut(s) 910
BstH2I RGCGCY 1 cut(s) 443
BstHHI GCGC 2 cut(s) 442, 1127
BstKTI GATC 5 cut(s) 702, 819, 948, 1017, 1047
BstMAI GTCTC 6 cut(s) 143, 831, 1060, 1148, 1222, 1276
BstMBI GATC 5 cut(s) 699, 816, 945, 1014, 1044
BstMCI CGRYCG 1 cut(s) 1053
BstMWI GCNNNNNNNGC 3 cut(s) 268, 446, 1001
BstPI GGTNACC 1 cut(s) 1246
BstSFI CTRYAG 1 cut(s) 403
BstUI CGCG 1 cut(s) 910
BstV1I GCAGC 5 cut(s) 158, 310, 982, 1187, 1195
BstV2I GAAGAC 1 cut(s) 664
BstX2I RGATCY 1 cut(s) 1014
BstYI RGATCY 1 cut(s) 1014
BsuI GTATCC 1 cut(s) 1148
BsuRI GGCC 2 cut(s) 262, 707
BtgI CCRYGG 3 cut(s) 57, 627, 908
BtsCI GGATG 3 cut(s) 315, 376, 927
BtsI GCAGTG 3 cut(s) 539, 648, 1004
BtsIMutI CAGTG 4 cut(s) 148, 539, 648, 1004
BveI ACCTGC 1 cut(s) 1256
Cac8I GCNNGC 3 cut(s) 115, 273, 447
CciI TCATGA 1 cut(s) 1041
CfoI GCGC 2 cut(s) 442, 1127
Cfr10I RCCGGY 2 cut(s) 271, 1343
Cfr13I GGNCC 1 cut(s) 1229
Cfr42I CCGCGG 1 cut(s) 911
Csp6I GTAC 4 cut(s) 173, 267, 428, 750
CviAII CATG 5 cut(s) 436, 806, 1042, 1102, 1187
CviQI GTAC 4 cut(s) 173, 267, 428, 750
DdeI CTNAG 3 cut(s) 140, 195, 1365
DinI GGCGCC 1 cut(s) 441
DpnI GATC 5 cut(s) 701, 818, 947, 1016, 1046
DpnII GATC 5 cut(s) 699, 816, 945, 1014, 1044
Eam1104I CTCTTC 5 cut(s) 212, 317, 496, 641, 836
EarI CTCTTC 5 cut(s) 212, 317, 496, 641, 836
EciI GGCGGA 1 cut(s) 879
Eco130I CCWWGG 1 cut(s) 571
Eco147I AGGCCT 1 cut(s) 262
Eco31I GGTCTC 2 cut(s) 143, 1148
Eco47I GGWCC 1 cut(s) 1229
Eco57I CTGAAG 4 cut(s) 566, 711, 817, 1339
Eco88I CYCGRG 1 cut(s) 218
Eco91I GGTNACC 1 cut(s) 1246
EcoO65I GGTNACC 1 cut(s) 1246
EcoRI GAATTC 1 cut(s) 1359
EcoT14I CCWWGG 1 cut(s) 571
EgeI GGCGCC 1 cut(s) 441
EheI GGCGCC 1 cut(s) 441
ErhI CCWWGG 1 cut(s) 571
Esp3I CGTCTC 1 cut(s) 1060
FaeI CATG 5 cut(s) 439, 809, 1045, 1105, 1190
FalI AAGNNNNNCTT 4 cut(s) 695, 727, 972, 1004
FaqI GGGAC 1 cut(s) 867
FatI CATG 5 cut(s) 435, 805, 1041, 1101, 1186
FbaI TGATCA 1 cut(s) 699
FblI GTMKAC 1 cut(s) 1307
Fnu4HI GCNGC 6 cut(s) 147, 324, 443, 996, 1176, 1184
FokI GGATG 3 cut(s) 302, 383, 934
Fsp4HI GCNGC 6 cut(s) 147, 324, 443, 996, 1176, 1184
FspBI CTAG 5 cut(s) 572, 1109, 1121, 1148, 1311
GlaI GCGC 2 cut(s) 441, 1126
GluI GCNGC 6 cut(s) 147, 324, 443, 996, 1176, 1184
HaeII RGCGCY 1 cut(s) 443
HaeIII GGCC 2 cut(s) 262, 707
HapII CCGG 2 cut(s) 272, 1344
HhaI GCGC 2 cut(s) 442, 1127
Hin1I GRCGYC 2 cut(s) 440, 856
Hin1II CATG 5 cut(s) 439, 809, 1045, 1105, 1190
Hin6I GCGC 2 cut(s) 440, 1125
HinP1I GCGC 2 cut(s) 440, 1125
HindIII AAGCTT 1 cut(s) 197
HinfI GANTC 4 cut(s) 374, 483, 596, 1114
HpaII CCGG 2 cut(s) 272, 1344
HphI GGTGA 2 cut(s) 644, 709
Hpy166II GTNNAC 3 cut(s) 156, 687, 1308
Hpy188III TCNNGA 6 cut(s) 584, 892, 1042, 1048, 1232, 1291
Hpy8I GTNNAC 3 cut(s) 156, 687, 1308
HpyAV CCTTC 4 cut(s) 278, 581, 1261, 1363
HpyCH4III ACNGT 5 cut(s) 109, 407, 763, 1025, 1054
HpyCH4IV ACGT 1 cut(s) 856
HpyCH4V TGCA 7 cut(s) 7, 113, 146, 524, 794, 930, 1004
HpyF10VI GCNNNNNNNGC 3 cut(s) 268, 446, 1001
HpyF3I CTNAG 3 cut(s) 140, 195, 1365
HpySE526I ACGT 1 cut(s) 856
Hsp92I GRCGYC 2 cut(s) 440, 856
Hsp92II CATG 5 cut(s) 439, 809, 1045, 1105, 1190
HspAI GCGC 2 cut(s) 440, 1125
KasI GGCGCC 1 cut(s) 439
KroI GCCGGC 1 cut(s) 271
KroNI GCCGGC 1 cut(s) 273
Ksp22I TGATCA 1 cut(s) 699
KspI CCGCGG 1 cut(s) 911
Kzo9I GATC 5 cut(s) 699, 816, 945, 1014, 1044
LguI GCTCTTC 1 cut(s) 496
LmnI GCTCC 2 cut(s) 295, 397
Lsp1109I GCAGC 5 cut(s) 158, 310, 982, 1187, 1195
MaeI CTAG 5 cut(s) 572, 1109, 1121, 1148, 1311
MaeII ACGT 1 cut(s) 856
MaeIII GTNAC 5 cut(s) 70, 302, 757, 1104, 1246
MalI GATC 5 cut(s) 701, 818, 947, 1016, 1046
MboI GATC 5 cut(s) 699, 816, 945, 1014, 1044
MboII GAAGA 9 cut(s) 183, 199, 304, 483, 591, 658, 669, 686, 823
MflI RGATCY 1 cut(s) 1014
MhlI GDGCHC 2 cut(s) 354, 394
MluCI AATT 8 cut(s) 184, 499, 772, 844, 903, 936, 1096, 1359
Mly113I GGCGCC 1 cut(s) 440
MlyI GAGTC 1 cut(s) 492
MmeI TCCRAC 1 cut(s) 319
MroNI GCCGGC 1 cut(s) 271
MroXI GAANNNNTTC 1 cut(s) 595
MseI TTAA 1 cut(s) 1194
MslI CAYNNNNRTG 3 cut(s) 245, 614, 1203
MspA1I CMGCKG 2 cut(s) 149, 910
MspI CCGG 2 cut(s) 272, 1344
Mva1269I GAATGC 1 cut(s) 117
MvnI CGCG 1 cut(s) 910
MwoI GCNNNNNNNGC 3 cut(s) 268, 446, 1001
NaeI GCCGGC 1 cut(s) 273
NarI GGCGCC 1 cut(s) 440
NdeII GATC 5 cut(s) 699, 816, 945, 1014, 1044
NgoMIV GCCGGC 1 cut(s) 271
NlaIII CATG 5 cut(s) 439, 809, 1045, 1105, 1190
NlaIV GGNNCC 5 cut(s) 225, 441, 985, 1230, 1351
NmuCI GTSAC 3 cut(s) 70, 302, 1104
PagI TCATGA 1 cut(s) 1041
PaqCI CACCTGC 1 cut(s) 1256
PceI AGGCCT 1 cut(s) 262
PciSI GCTCTTC 1 cut(s) 496
PctI GAATGC 1 cut(s) 117
PdiI GCCGGC 1 cut(s) 273
PdmI GAANNNNTTC 1 cut(s) 595
PfeI GAWTC 3 cut(s) 374, 596, 1114
PkrI GCNGC 6 cut(s) 148, 325, 444, 997, 1177, 1185
PleI GAGTC 1 cut(s) 491
PluTI GGCGCC 1 cut(s) 443
PpsI GAGTC 1 cut(s) 491
PsiI TTATAA 1 cut(s) 941
PspEI GGTNACC 1 cut(s) 1246
PspN4I GGNNCC 5 cut(s) 225, 441, 985, 1230, 1351
PspPI GGNCC 1 cut(s) 1229
PsrI GAACNNNNNNTAC 2 cut(s) 793, 825
PsuI RGATCY 1 cut(s) 1014
PvuII CAGCTG 1 cut(s) 149
RsaI GTAC 4 cut(s) 174, 268, 429, 751
RsaNI GTAC 4 cut(s) 173, 267, 428, 750
RseI CAYNNNNRTG 3 cut(s) 245, 614, 1203
SacII CCGCGG 1 cut(s) 911
SapI GCTCTTC 1 cut(s) 496
SaqAI TTAA 1 cut(s) 1194
SatI GCNGC 6 cut(s) 147, 324, 443, 996, 1176, 1184
Sau3AI GATC 5 cut(s) 699, 816, 945, 1014, 1044
Sau96I GGNCC 1 cut(s) 1229
ScaI AGTACT 1 cut(s) 429
SchI GAGTC 1 cut(s) 492
SduI GDGCHC 2 cut(s) 354, 394
SfcI CTRYAG 1 cut(s) 403
SfoI GGCGCC 1 cut(s) 441
Sfr303I CCGCGG 1 cut(s) 911
SgrBI CCGCGG 1 cut(s) 911
SinI GGWCC 1 cut(s) 1229
SmiMI CAYNNNNRTG 3 cut(s) 245, 614, 1203
SmlI CTYRAG 2 cut(s) 385, 1291
SmoI CTYRAG 2 cut(s) 385, 1291
Sse9I AATT 8 cut(s) 184, 499, 772, 844, 903, 936, 1096, 1359
SseBI AGGCCT 1 cut(s) 262
SsiI CCGC 5 cut(s) 443, 695, 864, 908, 910
SspDI GGCGCC 1 cut(s) 439
SspI AATATT 1 cut(s) 366
SspMI CTAG 5 cut(s) 572, 1109, 1121, 1148, 1311
StuI AGGCCT 1 cut(s) 262
StyI CCWWGG 1 cut(s) 571
TaaI ACNGT 5 cut(s) 109, 407, 763, 1025, 1054
TaiI ACGT 1 cut(s) 859
TasI AATT 8 cut(s) 184, 499, 772, 844, 903, 936, 1096, 1359
TatI WGTACW 1 cut(s) 427
TauI GCSGC 1 cut(s) 445
TfiI GAWTC 3 cut(s) 374, 596, 1114
Tru1I TTAA 1 cut(s) 1194
Tru9I TTAA 1 cut(s) 1194
TscAI CASTG 4 cut(s) 148, 546, 648, 1011
TseFI GTSAC 3 cut(s) 70, 302, 1104
TseI GCWGC 5 cut(s) 146, 323, 995, 1175, 1183
Tsp45I GTSAC 3 cut(s) 70, 302, 1104
TspDTI ATGAA 7 cut(s) 177, 229, 304, 543, 591, 1090, 1344
TspRI CASTG 4 cut(s) 148, 546, 648, 1011
VpaK11BI GGWCC 1 cut(s) 1229
XapI RAATTY 1 cut(s) 1359
XmaJI CCTAGG 1 cut(s) 571
XmiI GTMKAC 1 cut(s) 1307
XmnI GAANNNNTTC 1 cut(s) 595
XspI CTAG 5 cut(s) 572, 1109, 1121, 1148, 1311
ZraI GACGTC 1 cut(s) 857
ZrmI AGTACT 1 cut(s) 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.