Rh2DG024500

Nodulin-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
1459353 .. 1462799
3447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG024500.1

Sequence Viewer

Length: 1218 bp
ATGGTGACCGTTAACGTTAAAGGAGGCACAAGGCCGCCGTGGGTGGGCTTAGGAGCGGCGGTGTGGGTCCAAATAGCCGCCGGAAACGCCTACAACTTCCCGCTTTACTCGCACTCGCTCAAGTCCGTTCTGGGGTTCAGTCAGCGACAGTTGACCATGCTCGGAGTGGCTAATGATATCGGGGAAAACGTTGGACTTGTTCCTGGGATTGCTTCCAACAAGCTCCCACCTTGGATGATACTTTCGATTGGGGCCTTCGCTTGTTTCTTTGGTTACGGTGTGCTCTGGCTCGCTGTCAGCCGTACAGTTCTGTCCTTGCCTTATTGGTTGTTATGGATTGCTCTTTGTGTTGCTACTAATAGTAGTGCTTGGTTTACCACGGCTGTTCTTGTGACCAATATGAGGAACTTCCCTGTTAGTCGTGGAACTGTTGCAGGCATTCTGAAAGGTTATGGGGGTCTCAGTGCAGCTGTGTTTACAGAAGTTTATAGCGTACTGCTTCGTAATTCATCTTCTAAGCTTCTACTCTTCCTTACACTCGGGGTTCCTCTCCTGTGTTTCATTCTGATGTATTTAGTTAGGCCTTGTACGCCGGCTAATAGTGAAGGCCCGGTGGAGCGTGGTCACTTTCTCTTCATCCAAGCTGCGAGTGTGGTGGTTGGATTATATGTGCTCACAACTACAATATTGGATGATTCCTTTTCCTTGAGTGCTCCGATTACCTACAGTTTTGTTGTCATAATGGTAGTACTTCTCATGGCGCCGCTTGCTATCCCTCTAAAAATGACATTTTATCCCACAAGAGTCAGCTCTTCTGATAATTTGAATAATGAGGATAGCAATGCAGATGAAACTGAACCACTGCTGAAGTCATCTTTATCAACAACAAGCCTAGGGAGTTTTCGTGAAGGGAATGATTCTTCGTCTGACATAGCTATGCTTCTCGCCGTGGGTGAGGGGGCAGTGAAGAGAAAGAGAAGACCCAAAAGAGGGGAAGATTTCAAGTTTACTGAAGCTGTGATCAAGGCAGACTTCTGGCTTCTGTTTTTGGTTTATTTTGTAGGGGTTGGTACTGGGGTAACTGTTCTGAATAATTTAGCTCAAATAGGTATTGCACAAGGAACGCATGATACCACGATCTTGTTGTCTCTCTTCAGCTTTGGCAATTTCGTGGGACGTCTTGGCGGAGGAGTTGTTTCTGAACATTTTGTCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

405

Amino Acids

43.62

Weight (kDa)

8.97

Isoelectric Point (pI)

30.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nodulin-like PF06813 13 - 260 4.8e-88 Nodulin-like
NFD4_C PF23262 342 - 396 3.5e-08 NFD4, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1180
AccB1I GGYRCC 1 cut(s) 760
AccBSI CCGCTC 1 cut(s) 56
AciI CCGC 7 cut(s) 35, 56, 59, 78, 101, 764, 1185
AclI AACGTT 2 cut(s) 15, 189
AcuI CTGAAG 3 cut(s) 887, 1032, 1138
AcyI GRCGYC 2 cut(s) 761, 1177
AfaI GTAC 5 cut(s) 304, 495, 589, 750, 1072
AfiI CCNNNNNNNGG 5 cut(s) 44, 132, 402, 989, 990
AgsI TTSAA 2 cut(s) 826, 1003
AjnI CCWGG 1 cut(s) 202
AluBI AGCT 9 cut(s) 223, 470, 520, 644, 810, 935, 1016, 1100, 1158
AluI AGCT 9 cut(s) 223, 470, 520, 644, 810, 935, 1016, 1100, 1158
Alw21I GWGCWC 3 cut(s) 285, 675, 715
Alw26I GTCTC 2 cut(s) 464, 1152
Ama87I CYCGRG 1 cut(s) 539
AoxI GGCC 4 cut(s) 32, 252, 581, 607
ApeKI GCWGC 2 cut(s) 467, 644
AspA2I CCTAGG 1 cut(s) 892
AspLEI GCGC 1 cut(s) 763
AspS9I GGNCC 3 cut(s) 67, 252, 608
AsuC2I CCSGG 1 cut(s) 611
AsuHPI GGTGA 2 cut(s) 16, 965
AvaI CYCGRG 1 cut(s) 539
AvaII GGWCC 1 cut(s) 67
AvrII CCTAGG 1 cut(s) 892
BaeI ACNNNNGTAYC 2 cut(s) 1062, 1095
BanI GGYRCC 1 cut(s) 760
BarI GAAGNNNNNNTAC 2 cut(s) 496, 528
BbsI GAAGAC 1 cut(s) 985
Bbv12I GWGCWC 3 cut(s) 285, 675, 715
BbvI GCAGC 2 cut(s) 479, 631
BceAI ACGGC 4 cut(s) 22, 285, 396, 932
BciT130I CCWGG 1 cut(s) 204
BclI TGATCA 1 cut(s) 1020
BcnI CCSGG 1 cut(s) 611
BcoDI GTCTC 2 cut(s) 464, 1152
BfaI CTAG 1 cut(s) 893
BfmI CTRYAG 1 cut(s) 724
BfoI RGCGCY 1 cut(s) 764
BisI GCNGC 6 cut(s) 35, 57, 78, 468, 645, 764
BlnI CCTAGG 1 cut(s) 892
BlsI GCNGC 6 cut(s) 36, 58, 79, 469, 646, 765
BmcAI AGTACT 1 cut(s) 750
Bme1390I CCNGG 2 cut(s) 204, 611
Bme18I GGWCC 1 cut(s) 67
BmeT110I CYCGRG 1 cut(s) 539
BmgT120I GGNCC 3 cut(s) 67, 252, 608
BmiI GGNNCC 4 cut(s) 68, 253, 546, 762
BmrFI CCNGG 2 cut(s) 204, 611
BmrI ACTGGG 1 cut(s) 1083
BmuI ACTGGG 1 cut(s) 1083
BpiI GAAGAC 1 cut(s) 985
Bpu10I CCTNAGC 1 cut(s) 49
BpuEI CTTGAG 2 cut(s) 104, 727
BpuMI CCSGG 1 cut(s) 611
BsaHI GRCGYC 2 cut(s) 761, 1177
BsaI GGTCTC 1 cut(s) 464
BsaJI CCNNGG 6 cut(s) 38, 203, 230, 378, 892, 948
BsaXI ACNNNNNCTCC 6 cut(s) 45, 75, 889, 919, 1179, 1209
Bsc4I CCNNNNNNNGG 5 cut(s) 44, 132, 402, 989, 990
Bse118I RCCGGY 1 cut(s) 592
Bse1I ACTGG 1 cut(s) 1078
Bse3DI GCAATG 1 cut(s) 847
BseBI CCWGG 1 cut(s) 204
BseDI CCNNGG 6 cut(s) 38, 203, 230, 378, 892, 948
BseGI GGATG 3 cut(s) 240, 636, 697
BseLI CCNNNNNNNGG 5 cut(s) 44, 132, 402, 989, 990
BseMI GCAATG 1 cut(s) 847
BseMII CTCAG 1 cut(s) 475
BseNI ACTGG 1 cut(s) 1078
BseRI GAGGAG 1 cut(s) 1203
BseXI GCAGC 2 cut(s) 479, 631
BsgI GTGCAG 1 cut(s) 486
BshFI GGCC 4 cut(s) 34, 254, 583, 609
BshNI GGYRCC 1 cut(s) 760
BsiHKAI GWGCWC 3 cut(s) 285, 675, 715
BsiHKCI CYCGRG 1 cut(s) 539
BsiSI CCGG 3 cut(s) 81, 593, 611
BslFI GGGAC 1 cut(s) 1188
BslI CCNNNNNNNGG 5 cut(s) 44, 132, 402, 989, 990
BsmAI GTCTC 2 cut(s) 464, 1152
BsmFI GGGAC 1 cut(s) 1188
BsmI GAATGC 1 cut(s) 438
BsnI GGCC 4 cut(s) 34, 254, 583, 609
Bso31I GGTCTC 1 cut(s) 464
BsoBI CYCGRG 1 cut(s) 539
Bsp1286I GDGCHC 3 cut(s) 285, 675, 715
Bsp143I GATC 2 cut(s) 1020, 1137
BspACI CCGC 7 cut(s) 35, 56, 59, 78, 101, 764, 1185
BspANI GGCC 4 cut(s) 34, 254, 583, 609
BspCNI CTCAG 1 cut(s) 474
BspLI GGNNCC 4 cut(s) 68, 253, 546, 762
BspQI GCTCTTC 1 cut(s) 817
BspT107I GGYRCC 1 cut(s) 760
BspTNI GGTCTC 1 cut(s) 464
BsrBI CCGCTC 1 cut(s) 56
BsrDI GCAATG 1 cut(s) 847
BsrFI RCCGGY 1 cut(s) 592
BsrI ACTGG 1 cut(s) 1078
BssAI RCCGGY 1 cut(s) 592
BssECI CCNNGG 6 cut(s) 38, 203, 230, 378, 892, 948
BssMI GATC 2 cut(s) 1020, 1137
BssNI GRCGYC 2 cut(s) 761, 1177
BssT1I CCWWGG 2 cut(s) 230, 892
Bst2UI CCWGG 1 cut(s) 204
Bst4CI ACNGT 7 cut(s) 10, 150, 278, 307, 430, 728, 1084
Bst6I CTCTTC 5 cut(s) 533, 638, 817, 962, 1157
BstACI GRCGYC 2 cut(s) 761, 1177
BstC8I GCNNGC 4 cut(s) 291, 436, 594, 768
BstDEI CTNAG 3 cut(s) 49, 461, 516
BstDSI CCRYGG 3 cut(s) 38, 378, 948
BstEII GGTNACC 1 cut(s) 4
BstF5I GGATG 3 cut(s) 240, 636, 697
BstH2I RGCGCY 1 cut(s) 764
BstHHI GCGC 1 cut(s) 763
BstKTI GATC 2 cut(s) 1023, 1140
BstMAI GTCTC 2 cut(s) 464, 1152
BstMBI GATC 2 cut(s) 1020, 1137
BstMWI GCNNNNNNNGC 4 cut(s) 86, 109, 589, 767
BstNI CCWGG 1 cut(s) 204
BstPI GGTNACC 1 cut(s) 4
BstSCI CCNGG 2 cut(s) 202, 609
BstSFI CTRYAG 1 cut(s) 724
BstV1I GCAGC 2 cut(s) 479, 631
BstV2I GAAGAC 1 cut(s) 985
BsuRI GGCC 4 cut(s) 34, 254, 583, 609
BtgI CCRYGG 3 cut(s) 38, 378, 948
BtsCI GGATG 3 cut(s) 240, 636, 697
BtsI GCAGTG 2 cut(s) 860, 969
BtsIMutI CAGTG 3 cut(s) 469, 860, 969
Cac8I GCNNGC 4 cut(s) 291, 436, 594, 768
CfoI GCGC 1 cut(s) 763
Cfr10I RCCGGY 1 cut(s) 592
Cfr13I GGNCC 3 cut(s) 67, 252, 608
Csp6I GTAC 5 cut(s) 303, 494, 588, 749, 1071
CviAII CATG 3 cut(s) 157, 757, 1127
CviQI GTAC 5 cut(s) 303, 494, 588, 749, 1071
DdeI CTNAG 3 cut(s) 49, 461, 516
DinI GGCGCC 1 cut(s) 762
DpnI GATC 2 cut(s) 1022, 1139
DpnII GATC 2 cut(s) 1020, 1137
Eam1104I CTCTTC 5 cut(s) 533, 638, 817, 962, 1157
EarI CTCTTC 5 cut(s) 533, 638, 817, 962, 1157
EciI GGCGGA 1 cut(s) 1200
Eco130I CCWWGG 2 cut(s) 230, 892
Eco147I AGGCCT 1 cut(s) 583
Eco31I GGTCTC 1 cut(s) 464
Eco32I GATATC 1 cut(s) 178
Eco47I GGWCC 1 cut(s) 67
Eco57I CTGAAG 3 cut(s) 887, 1032, 1138
Eco88I CYCGRG 1 cut(s) 539
Eco91I GGTNACC 1 cut(s) 4
EcoO109I RGGNCCY 1 cut(s) 252
EcoO65I GGTNACC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 202
EcoRV GATATC 1 cut(s) 178
EcoT14I CCWWGG 2 cut(s) 230, 892
EgeI GGCGCC 1 cut(s) 762
EheI GGCGCC 1 cut(s) 762
ErhI CCWWGG 2 cut(s) 230, 892
FaeI CATG 3 cut(s) 160, 760, 1130
FalI AAGNNNNNCTT 2 cut(s) 1016, 1048
FaqI GGGAC 1 cut(s) 1188
FatI CATG 3 cut(s) 156, 756, 1126
FauI CCCGC 1 cut(s) 108
FbaI TGATCA 1 cut(s) 1020
Fnu4HI GCNGC 6 cut(s) 35, 57, 78, 468, 645, 764
FokI GGATG 3 cut(s) 247, 623, 704
Fsp4HI GCNGC 6 cut(s) 35, 57, 78, 468, 645, 764
FspBI CTAG 1 cut(s) 893
GlaI GCGC 1 cut(s) 762
GluI GCNGC 6 cut(s) 35, 57, 78, 468, 645, 764
HaeII RGCGCY 1 cut(s) 764
HaeIII GGCC 4 cut(s) 34, 254, 583, 609
HapII CCGG 3 cut(s) 81, 593, 611
HhaI GCGC 1 cut(s) 763
Hin1I GRCGYC 2 cut(s) 761, 1177
Hin1II CATG 3 cut(s) 160, 760, 1130
Hin6I GCGC 1 cut(s) 761
HinP1I GCGC 1 cut(s) 761
HincII GTYRAC 2 cut(s) 13, 153
HindII GTYRAC 2 cut(s) 13, 153
HindIII AAGCTT 1 cut(s) 518
HinfI GANTC 3 cut(s) 695, 804, 917
HpaI GTTAAC 1 cut(s) 13
HpaII CCGG 3 cut(s) 81, 593, 611
HphI GGTGA 2 cut(s) 16, 965
Hpy166II GTNNAC 5 cut(s) 13, 153, 375, 477, 1008
Hpy188I TCNGA 8 cut(s) 164, 444, 567, 717, 817, 928, 1089, 1201
Hpy188III TCNNGA 1 cut(s) 905
Hpy8I GTNNAC 5 cut(s) 13, 153, 375, 477, 1008
HpyAV CCTTC 3 cut(s) 265, 599, 902
HpyCH4III ACNGT 7 cut(s) 10, 150, 278, 307, 430, 728, 1084
HpyCH4IV ACGT 3 cut(s) 15, 189, 1177
HpyCH4V TGCA 4 cut(s) 434, 467, 845, 1115
HpyF10VI GCNNNNNNNGC 4 cut(s) 86, 109, 589, 767
HpyF3I CTNAG 3 cut(s) 49, 461, 516
HpySE526I ACGT 3 cut(s) 15, 189, 1177
Hsp92I GRCGYC 2 cut(s) 761, 1177
Hsp92II CATG 3 cut(s) 160, 760, 1130
HspAI GCGC 1 cut(s) 761
KasI GGCGCC 1 cut(s) 760
KroI GCCGGC 1 cut(s) 592
KroNI GCCGGC 1 cut(s) 594
Ksp22I TGATCA 1 cut(s) 1020
KspAI GTTAAC 1 cut(s) 13
Kzo9I GATC 2 cut(s) 1020, 1137
LguI GCTCTTC 1 cut(s) 817
LmnI GCTCC 4 cut(s) 53, 228, 616, 718
Lsp1109I GCAGC 2 cut(s) 479, 631
MaeI CTAG 1 cut(s) 893
MaeII ACGT 3 cut(s) 15, 189, 1177
MaeIII GTNAC 5 cut(s) 4, 272, 391, 623, 1078
MalI GATC 2 cut(s) 1022, 1139
MbiI CCGCTC 1 cut(s) 56
MboI GATC 2 cut(s) 1020, 1137
MboII GAAGA 9 cut(s) 504, 520, 625, 804, 912, 979, 990, 1007, 1144
MhlI GDGCHC 3 cut(s) 285, 675, 715
MluCI AATT 4 cut(s) 505, 820, 1093, 1165
Mly113I GGCGCC 1 cut(s) 761
MlyI GAGTC 1 cut(s) 813
MmeI TCCRAC 3 cut(s) 172, 240, 640
MnlI CCTC 8 cut(s) 17, 396, 558, 786, 826, 949, 983, 1181
MroNI GCCGGC 1 cut(s) 592
MseI TTAA 2 cut(s) 12, 18
MslI CAYNNNNRTG 2 cut(s) 566, 935
MspA1I CMGCKG 1 cut(s) 470
MspI CCGG 3 cut(s) 81, 593, 611
MspR9I CCNGG 2 cut(s) 204, 611
Mva1269I GAATGC 1 cut(s) 438
MvaI CCWGG 1 cut(s) 204
MwoI GCNNNNNNNGC 4 cut(s) 86, 109, 589, 767
NaeI GCCGGC 1 cut(s) 594
NarI GGCGCC 1 cut(s) 761
NciI CCSGG 1 cut(s) 611
NdeII GATC 2 cut(s) 1020, 1137
NgoMIV GCCGGC 1 cut(s) 592
NlaIII CATG 3 cut(s) 160, 760, 1130
NlaIV GGNNCC 4 cut(s) 68, 253, 546, 762
NmuCI GTSAC 3 cut(s) 4, 391, 623
PceI AGGCCT 1 cut(s) 583
PciSI GCTCTTC 1 cut(s) 817
PcsI WCGNNNNNNNCGW 1 cut(s) 186
PctI GAATGC 1 cut(s) 438
PdiI GCCGGC 1 cut(s) 594
PfeI GAWTC 2 cut(s) 695, 917
PkrI GCNGC 6 cut(s) 36, 58, 79, 469, 646, 765
PleI GAGTC 1 cut(s) 812
PluTI GGCGCC 1 cut(s) 764
PpsI GAGTC 1 cut(s) 812
Psp1406I AACGTT 2 cut(s) 15, 189
Psp6I CCWGG 1 cut(s) 202
PspEI GGTNACC 1 cut(s) 4
PspGI CCWGG 1 cut(s) 202
PspN4I GGNNCC 4 cut(s) 68, 253, 546, 762
PspPI GGNCC 3 cut(s) 67, 252, 608
PsrI GAACNNNNNNTAC 2 cut(s) 1114, 1146
PvuII CAGCTG 1 cut(s) 470
RsaI GTAC 5 cut(s) 304, 495, 589, 750, 1072
RsaNI GTAC 5 cut(s) 303, 494, 588, 749, 1071
RseI CAYNNNNRTG 2 cut(s) 566, 935
SapI GCTCTTC 1 cut(s) 817
SaqAI TTAA 2 cut(s) 12, 18
SatI GCNGC 6 cut(s) 35, 57, 78, 468, 645, 764
Sau3AI GATC 2 cut(s) 1020, 1137
Sau96I GGNCC 3 cut(s) 67, 252, 608
ScaI AGTACT 1 cut(s) 750
SchI GAGTC 1 cut(s) 813
ScrFI CCNGG 2 cut(s) 204, 611
SduI GDGCHC 3 cut(s) 285, 675, 715
SfcI CTRYAG 1 cut(s) 724
SfoI GGCGCC 1 cut(s) 762
SinI GGWCC 1 cut(s) 67
SmiMI CAYNNNNRTG 2 cut(s) 566, 935
SmlI CTYRAG 2 cut(s) 119, 706
SmoI CTYRAG 2 cut(s) 119, 706
Sse9I AATT 4 cut(s) 505, 820, 1093, 1165
SseBI AGGCCT 1 cut(s) 583
SsiI CCGC 7 cut(s) 35, 56, 59, 78, 101, 764, 1185
SspDI GGCGCC 1 cut(s) 760
SspI AATATT 1 cut(s) 687
SspMI CTAG 1 cut(s) 893
StuI AGGCCT 1 cut(s) 583
StyD4I CCNGG 2 cut(s) 202, 609
StyI CCWWGG 2 cut(s) 230, 892
TaaI ACNGT 7 cut(s) 10, 150, 278, 307, 430, 728, 1084
TaiI ACGT 3 cut(s) 18, 192, 1180
TaqI TCGA 1 cut(s) 245
TasI AATT 4 cut(s) 505, 820, 1093, 1165
TatI WGTACW 1 cut(s) 748
TauI GCSGC 4 cut(s) 37, 59, 80, 766
TfiI GAWTC 2 cut(s) 695, 917
Tru1I TTAA 2 cut(s) 12, 18
Tru9I TTAA 2 cut(s) 12, 18
TscAI CASTG 3 cut(s) 469, 867, 969
TseFI GTSAC 3 cut(s) 4, 391, 623
TseI GCWGC 2 cut(s) 467, 644
Tsp45I GTSAC 3 cut(s) 4, 391, 623
TspDTI ATGAA 4 cut(s) 498, 550, 625, 864
TspGWI ACGGA 1 cut(s) 115
TspRI CASTG 3 cut(s) 469, 867, 969
VpaK11BI GGWCC 1 cut(s) 67
XcmI CCANNNNNNNNNTGG 1 cut(s) 163
XmaJI CCTAGG 1 cut(s) 892
XspI CTAG 1 cut(s) 893
ZraI GACGTC 1 cut(s) 1178
ZrmI AGTACT 1 cut(s) 750
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.