Prupe.7G257000_v2.0.a1

Nodulin-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Forward (+)
21505241 .. 21509206
3966 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G257000.1

Sequence Viewer

Length: 1761 bp
ATGGTGACCGTTAAAGCAGGGACCAGACCGCCATGGGTGGGATTGGGAGCAGCAGTTTGGGTCCAAATAGCAGCAGGCAATGCCTACACTTTTCCACTTTACTCTCACTCGCTGAAATCGGTTCTGGGTTTCAACCAGCGACAGCTGACCATGCTTGGTGTGGCCAATGACATAGGTGAAAATGTTGGTCTCATACCAGGTATTGCATCCAACAAGCTCCCGCCTTGGGTCATTCTTCTGATTGGCGCTCTCGCTTGCTTCTCTGGTTATGGTGTCCTCTGGCTTGTTGTCAGCCGCACACTTCACCCTCTGCCCTACTGGTTGTTATGGATTGCCCTTTGTGTTGCCACTAATAGTAATGCTTGGTTTACCACGGCTGTGCTTGTAACCAATATGAGAAACTTCCCTCTTAGTCGTGGCATGGTTGCTGGTATTCTAAAAGGTTATGGGGGTCTCAGCGCAGCTGTATTTACAGAAATTTACAGCGTTCTGCTTCGTAATTCATCTTCTAAGCTTCTACTCTTCCTGGTACTTGGGATTCCAATTCTATGTTTCAGCATGATGTATTTCGTTAGGCCTTGTACTCCAGCTTCTAGTCAAGACCCTGCAGAGCGTGGCCACTTTCTTTTCATCCAAGTTGCAAGCGTTGTGCTTGGGTTATATGTTCTCACAACTACGGTATTGGATGATGTCCTTACCTTAAGTGCTACAGTTACCAACACTTTTGTTGTCATAATGGTTCTGCTTCTCATGGCCCCACTTGCAATTCCTGTAAAAATGACATTGTATCCCACCAGAGCCAGCAAATCAGGGACGCTTGGTCAAACAGTTGGGTCTTCTGATAGTTTGAACCATGCGGAAGGCTTGGATAATGGAGAAGGCAATGCAGACAAAACAGAACCACTGCTGAAACCATCTCCATCAACAAGCAGCCTGGCAAGTGAAGGTGATGATTCATCTGATGTAGCTATGCTTCTTGCAGAGGGTGAGGGGGCAGTGAAGAGAAAGAGAAGGCCCAAAAGAGGGGAGGATTTCAAGTTTAGTGAAGCTGTGGTCAAGGCTGACTTCTGGCTCCTATTCGTGGTTTATTTTGTAGGGGTTGGTTCTGGGGTAACTGTTCTCAATAATCTAGCCCAAATAGGGATTGCACAAGGATTTCGTGATACCACAATCTTGCTGTCTCTCTTCAGCTTTGGCAATTTTGTGGGACGTCTTGGTGGAGGAGTTGTTTCTGAACATTTTGTCAGGTCAAAAACAATCCCTCGGACAGTTTGGATGACATGCACTCAAATTATAATGATTGGTACATATCTGCTGTTTGCTTCTGCCATCAGTGGAACCCTTTATGCTGCAACTGCATTACTTGGAATCTGCTATGGAGTCCAATTTTCTATCATGATCCCAACAGTCTCGGAACTCTTTGGATTGAGGCATTTTGGCATATTCTACAATTTCATGTCATTAGGGAATCCTCTAGGCGCATTTCTTTTTTCAGGTCTCCTAGCAGGCTGTCTGTGGCGTGGGTACCATCTTGAGCATTGTTCTGTCTATAAGGATAAAGCCTGTTTACCAAATGCTTTATGCTGGGGGTTCCTTCAGGGTACCGCAAAGTACAAACCATTAAGAACAATGTGTGGTGAGTGGAAGTTCAACTGTCCAAGGAGCCATCCTATATACTCCTTGAAGGTCTTGCGCATATTGGTAGAACTGTTGGAGATCTCGAAACTCCCATCAATGGAGTCCATGTTTGGGCACCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

587

Amino Acids

63.63

Weight (kDa)

9.09

Isoelectric Point (pI)

28.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1295
AatII GACGTC 1 cut(s) 1213
Acc16I TGCGCA 1 cut(s) 1694
Acc65I GGTACC 2 cut(s) 1524, 1601
AccB1I GGYRCC 3 cut(s) 1524, 1601, 1752
AciI CCGC 5 cut(s) 29, 221, 295, 857, 1605
AclWI GGATC 1 cut(s) 1393
AcoI YGGCCR 2 cut(s) 162, 616
AcsI RAATTY 1 cut(s) 477
AcuI CTGAAG 2 cut(s) 1171, 1580
AcyI GRCGYC 1 cut(s) 1210
AfaI GTAC 6 cut(s) 531, 583, 1306, 1526, 1603, 1613
AfiI CCNNNNNNNGG 8 cut(s) 38, 226, 1022, 1023, 1081, 1140, 1735, 1749
AflII CTTAAG 1 cut(s) 700
AgsI TTSAA 5 cut(s) 133, 850, 1036, 1651, 1684
AhdI GACNNNNNGTC 1 cut(s) 819
AjnI CCWGG 3 cut(s) 196, 525, 933
AleI CACNNNNGTG 1 cut(s) 377
AluBI AGCT 8 cut(s) 145, 217, 464, 514, 590, 968, 1049, 1191
AluI AGCT 8 cut(s) 145, 217, 464, 514, 590, 968, 1049, 1191
Alw26I GTCTC 5 cut(s) 194, 458, 1185, 1414, 1502
AlwI GGATC 1 cut(s) 1393
AoxI GGCC 5 cut(s) 162, 575, 616, 753, 1013
ApeKI GCWGC 5 cut(s) 50, 71, 461, 930, 1349
ApoI RAATTY 1 cut(s) 477
Asp718I GGTACC 2 cut(s) 1524, 1601
AspLEI GCGC 4 cut(s) 248, 461, 1481, 1695
AspS9I GGNCC 4 cut(s) 21, 61, 754, 1014
AsuHPI GGTGA 6 cut(s) 16, 188, 296, 959, 998, 1649
AvaII GGWCC 2 cut(s) 21, 61
BaeGI GKGCMC 1 cut(s) 1755
BalI TGGCCA 2 cut(s) 164, 618
BanI GGYRCC 3 cut(s) 1524, 1601, 1752
BarI GAAGNNNNNNTAC 6 cut(s) 490, 522, 574, 606, 957, 989
BbsI GAAGAC 1 cut(s) 828
BbvI GCAGC 5 cut(s) 62, 83, 473, 942, 1336
BccI CCATC 6 cut(s) 922, 928, 1337, 1536, 1674, 1738
BceAI ACGGC 1 cut(s) 390
BciT130I CCWGG 3 cut(s) 198, 527, 935
BciVI GTATCC 1 cut(s) 798
BcoDI GTCTC 5 cut(s) 194, 458, 1185, 1414, 1502
BfaI CTAG 4 cut(s) 594, 1130, 1475, 1502
BfmI CTRYAG 2 cut(s) 606, 708
BfoI RGCGCY 1 cut(s) 249
BfrI CTTAAG 1 cut(s) 700
BfuI GTATCC 1 cut(s) 798
BglII AGATCT 1 cut(s) 1716
BisI GCNGC 6 cut(s) 51, 72, 295, 462, 931, 1350
BlsI GCNGC 6 cut(s) 52, 73, 296, 463, 932, 1351
Bme1390I CCNGG 3 cut(s) 198, 527, 935
Bme18I GGWCC 2 cut(s) 21, 61
BmeRI GACNNNNNGTC 1 cut(s) 819
BmgT120I GGNCC 4 cut(s) 21, 61, 754, 1014
BmrFI CCNGG 3 cut(s) 198, 527, 935
BmsI GCATC 1 cut(s) 215
BpiI GAAGAC 1 cut(s) 828
BpmI CTGGAG 1 cut(s) 570
BpuEI CTTGAG 1 cut(s) 1553
BsaHI GRCGYC 1 cut(s) 1210
BsaI GGTCTC 3 cut(s) 194, 458, 1502
BsaJI CCNNGG 5 cut(s) 32, 224, 372, 1262, 1658
BsaXI ACNNNNNCTCC 6 cut(s) 39, 69, 1212, 1242, 1730, 1760
Bsc4I CCNNNNNNNGG 8 cut(s) 38, 226, 1022, 1023, 1081, 1140, 1735, 1749
Bse1I ACTGG 1 cut(s) 323
Bse3DI GCAATG 2 cut(s) 85, 889
BseBI CCWGG 3 cut(s) 198, 527, 935
BseDI CCNNGG 5 cut(s) 32, 224, 372, 1262, 1658
BseGI GGATG 5 cut(s) 206, 630, 691, 1281, 1666
BseLI CCNNNNNNNGG 8 cut(s) 38, 226, 1022, 1023, 1081, 1140, 1735, 1749
BseMI GCAATG 2 cut(s) 85, 889
BseMII CTCAG 1 cut(s) 469
BseNI ACTGG 1 cut(s) 323
BseRI GAGGAG 1 cut(s) 1236
BseSI GKGCMC 1 cut(s) 1755
BseXI GCAGC 5 cut(s) 62, 83, 473, 942, 1336
BseYI CCCAGC 1 cut(s) 1584
BshFI GGCC 5 cut(s) 164, 577, 618, 755, 1015
BshNI GGYRCC 3 cut(s) 1524, 1601, 1752
BslFI GGGAC 3 cut(s) 34, 826, 1221
BslI CCNNNNNNNGG 8 cut(s) 38, 226, 1022, 1023, 1081, 1140, 1735, 1749
BsmAI GTCTC 5 cut(s) 194, 458, 1185, 1414, 1502
BsmFI GGGAC 3 cut(s) 34, 826, 1221
BsnI GGCC 5 cut(s) 164, 577, 618, 755, 1015
Bso31I GGTCTC 3 cut(s) 194, 458, 1502
Bsp1286I GDGCHC 1 cut(s) 1755
Bsp143I GATC 2 cut(s) 1398, 1716
Bsp19I CCATGG 1 cut(s) 32
BspACI CCGC 5 cut(s) 29, 221, 295, 857, 1605
BspANI GGCC 5 cut(s) 164, 577, 618, 755, 1015
BspCNI CTCAG 1 cut(s) 468
BspHI TCATGA 1 cut(s) 1395
BspMAI CTGCAG 1 cut(s) 610
BspPI GGATC 1 cut(s) 1393
BspT107I GGYRCC 3 cut(s) 1524, 1601, 1752
BspTI CTTAAG 1 cut(s) 700
BspTNI GGTCTC 3 cut(s) 194, 458, 1502
BsrDI GCAATG 2 cut(s) 85, 889
BsrI ACTGG 1 cut(s) 323
BssECI CCNNGG 5 cut(s) 32, 224, 372, 1262, 1658
BssMI GATC 2 cut(s) 1398, 1716
BssNI GRCGYC 1 cut(s) 1210
BssT1I CCWWGG 3 cut(s) 32, 224, 1658
Bst2UI CCWGG 3 cut(s) 198, 527, 935
Bst4CI ACNGT 9 cut(s) 10, 679, 712, 829, 1117, 1270, 1408, 1655, 1710
Bst6I CTCTTC 3 cut(s) 527, 995, 1190
BstACI GRCGYC 1 cut(s) 1210
BstAFI CTTAAG 1 cut(s) 700
BstAPI GCANNNNNTGC 1 cut(s) 80
BstC8I GCNNGC 5 cut(s) 76, 256, 643, 802, 1507
BstDEI CTNAG 3 cut(s) 410, 455, 510
BstDSI CCRYGG 2 cut(s) 32, 372
BstEII GGTNACC 1 cut(s) 4
BstF5I GGATG 5 cut(s) 206, 630, 691, 1281, 1666
BstH2I RGCGCY 1 cut(s) 249
BstHHI GCGC 4 cut(s) 248, 461, 1481, 1695
BstKTI GATC 2 cut(s) 1401, 1719
BstMAI GTCTC 5 cut(s) 194, 458, 1185, 1414, 1502
BstMBI GATC 2 cut(s) 1398, 1716
BstMWI GCNNNNNNNGC 4 cut(s) 80, 151, 761, 1355
BstNI CCWGG 3 cut(s) 198, 527, 935
BstNSI RCATGY 1 cut(s) 1284
BstPI GGTNACC 1 cut(s) 4
BstSCI CCNGG 3 cut(s) 196, 525, 933
BstSFI CTRYAG 2 cut(s) 606, 708
BstSLI GKGCMC 1 cut(s) 1755
BstV1I GCAGC 5 cut(s) 62, 83, 473, 942, 1336
BstV2I GAAGAC 1 cut(s) 828
BstX2I RGATCY 1 cut(s) 1716
BstYI RGATCY 1 cut(s) 1716
BsuI GTATCC 1 cut(s) 798
BsuRI GGCC 5 cut(s) 164, 577, 618, 755, 1015
BtgI CCRYGG 2 cut(s) 32, 372
BtsCI GGATG 5 cut(s) 206, 630, 691, 1281, 1666
BtsI GCAGTG 2 cut(s) 902, 1002
BtsIMutI CAGTG 3 cut(s) 902, 1002, 1339
Cac8I GCNNGC 5 cut(s) 76, 256, 643, 802, 1507
CciI TCATGA 1 cut(s) 1395
CfoI GCGC 4 cut(s) 248, 461, 1481, 1695
Cfr13I GGNCC 4 cut(s) 21, 61, 754, 1014
CseI GACGC 1 cut(s) 823
CsiI ACCWGGT 1 cut(s) 196
Csp6I GTAC 6 cut(s) 530, 582, 1305, 1525, 1602, 1612
CviQI GTAC 6 cut(s) 530, 582, 1305, 1525, 1602, 1612
DdeI CTNAG 3 cut(s) 410, 455, 510
DpnI GATC 2 cut(s) 1400, 1718
DpnII GATC 2 cut(s) 1398, 1716
DriI GACNNNNNGTC 1 cut(s) 819
EaeI YGGCCR 2 cut(s) 162, 616
Eam1104I CTCTTC 3 cut(s) 527, 995, 1190
Eam1105I GACNNNNNGTC 1 cut(s) 819
EarI CTCTTC 3 cut(s) 527, 995, 1190
Eco130I CCWWGG 3 cut(s) 32, 224, 1658
Eco147I AGGCCT 1 cut(s) 577
Eco31I GGTCTC 3 cut(s) 194, 458, 1502
Eco47I GGWCC 2 cut(s) 21, 61
Eco57I CTGAAG 2 cut(s) 1171, 1580
Eco91I GGTNACC 1 cut(s) 4
EcoO65I GGTNACC 1 cut(s) 4
EcoRII CCWGG 3 cut(s) 196, 525, 933
EcoT14I CCWWGG 3 cut(s) 32, 224, 1658
ErhI CCWWGG 3 cut(s) 32, 224, 1658
FalI AAGNNNNNCTT 2 cut(s) 1049, 1081
FaqI GGGAC 3 cut(s) 34, 826, 1221
FauI CCCGC 1 cut(s) 228
Fnu4HI GCNGC 6 cut(s) 51, 72, 295, 462, 931, 1350
FokI GGATG 5 cut(s) 193, 617, 698, 1288, 1653
Fsp4HI GCNGC 6 cut(s) 51, 72, 295, 462, 931, 1350
FspBI CTAG 4 cut(s) 594, 1130, 1475, 1502
FspI TGCGCA 1 cut(s) 1694
GlaI GCGC 4 cut(s) 247, 460, 1480, 1694
GluI GCNGC 6 cut(s) 51, 72, 295, 462, 931, 1350
GsaI CCCAGC 1 cut(s) 1588
GsuI CTGGAG 1 cut(s) 570
HaeII RGCGCY 1 cut(s) 249
HaeIII GGCC 5 cut(s) 164, 577, 618, 755, 1015
HgaI GACGC 1 cut(s) 823
HhaI GCGC 4 cut(s) 248, 461, 1481, 1695
Hin1I GRCGYC 1 cut(s) 1210
Hin6I GCGC 4 cut(s) 246, 459, 1479, 1693
HinP1I GCGC 4 cut(s) 246, 459, 1479, 1693
HindIII AAGCTT 1 cut(s) 512
HinfI GANTC 6 cut(s) 538, 953, 1368, 1380, 1468, 1739
HphI GGTGA 6 cut(s) 16, 188, 296, 959, 998, 1649
Hpy166II GTNNAC 2 cut(s) 369, 1568
Hpy188I TCNGA 6 cut(s) 240, 841, 961, 1234, 1266, 1414
Hpy188III TCNNGA 5 cut(s) 599, 1160, 1396, 1532, 1720
Hpy8I GTNNAC 2 cut(s) 369, 1568
HpyAV CCTTC 6 cut(s) 854, 872, 938, 1005, 1604, 1678
HpyCH4III ACNGT 9 cut(s) 10, 679, 712, 829, 1117, 1270, 1408, 1655, 1710
HpyCH4IV ACGT 1 cut(s) 1210
HpyF10VI GCNNNNNNNGC 4 cut(s) 80, 151, 761, 1355
HpyF3I CTNAG 3 cut(s) 410, 455, 510
HpySE526I ACGT 1 cut(s) 1210
Hsp92I GRCGYC 1 cut(s) 1210
HspAI GCGC 4 cut(s) 246, 459, 1479, 1693
KpnI GGTACC 2 cut(s) 1528, 1605
Kzo9I GATC 2 cut(s) 1398, 1716
LmnI GCTCC 4 cut(s) 47, 222, 1077, 1662
Lsp1109I GCAGC 5 cut(s) 62, 83, 473, 942, 1336
LweI GCATC 1 cut(s) 215
MabI ACCWGGT 1 cut(s) 196
MaeI CTAG 4 cut(s) 594, 1130, 1475, 1502
MaeII ACGT 1 cut(s) 1210
MaeIII GTNAC 4 cut(s) 4, 385, 712, 1111
MalI GATC 2 cut(s) 1400, 1718
MboI GATC 2 cut(s) 1398, 1716
MboII GAAGA 6 cut(s) 227, 498, 514, 828, 1012, 1177
MflI RGATCY 1 cut(s) 1716
MhlI GDGCHC 1 cut(s) 1755
MlsI TGGCCA 2 cut(s) 164, 618
MluCI AATT 8 cut(s) 477, 499, 543, 765, 1198, 1290, 1385, 1450
MluNI TGGCCA 2 cut(s) 164, 618
MlyI GAGTC 2 cut(s) 1389, 1748
MmeI TCCRAC 2 cut(s) 234, 1692
Mox20I TGGCCA 2 cut(s) 164, 618
MscI TGGCCA 2 cut(s) 164, 618
MseI TTAA 3 cut(s) 12, 701, 1622
MslI CAYNNNNRTG 1 cut(s) 377
Msp20I TGGCCA 2 cut(s) 164, 618
MspA1I CMGCKG 2 cut(s) 145, 464
MspCI CTTAAG 1 cut(s) 700
MspR9I CCNGG 3 cut(s) 198, 527, 935
MvaI CCWGG 3 cut(s) 198, 527, 935
MwoI GCNNNNNNNGC 4 cut(s) 80, 151, 761, 1355
NcoI CCATGG 1 cut(s) 32
NdeII GATC 2 cut(s) 1398, 1716
NmuCI GTSAC 1 cut(s) 4
NsbI TGCGCA 1 cut(s) 1694
NspI RCATGY 1 cut(s) 1284
OliI CACNNNNGTG 1 cut(s) 377
PagI TCATGA 1 cut(s) 1395
PceI AGGCCT 1 cut(s) 577
PfeI GAWTC 4 cut(s) 538, 953, 1368, 1468
PkrI GCNGC 6 cut(s) 52, 73, 296, 463, 932, 1351
PleI GAGTC 2 cut(s) 1388, 1747
PpsI GAGTC 2 cut(s) 1388, 1747
PsiI TTATAA 1 cut(s) 1295
Psp6I CCWGG 3 cut(s) 196, 525, 933
PspEI GGTNACC 1 cut(s) 4
PspFI CCCAGC 1 cut(s) 1584
PspGI CCWGG 3 cut(s) 196, 525, 933
PspPI GGNCC 4 cut(s) 21, 61, 754, 1014
PstI CTGCAG 1 cut(s) 610
PsuI RGATCY 1 cut(s) 1716
PvuII CAGCTG 2 cut(s) 145, 464
RsaI GTAC 6 cut(s) 531, 583, 1306, 1526, 1603, 1613
RsaNI GTAC 6 cut(s) 530, 582, 1305, 1525, 1602, 1612
RseI CAYNNNNRTG 1 cut(s) 377
SaqAI TTAA 3 cut(s) 12, 701, 1622
SatI GCNGC 6 cut(s) 51, 72, 295, 462, 931, 1350
Sau3AI GATC 2 cut(s) 1398, 1716
Sau96I GGNCC 4 cut(s) 21, 61, 754, 1014
SchI GAGTC 2 cut(s) 1389, 1748
ScrFI CCNGG 3 cut(s) 198, 527, 935
SduI GDGCHC 1 cut(s) 1755
SexAI ACCWGGT 1 cut(s) 196
SfaNI GCATC 1 cut(s) 215
SfcI CTRYAG 2 cut(s) 606, 708
SinI GGWCC 2 cut(s) 21, 61
SmiMI CAYNNNNRTG 1 cut(s) 377
SmlI CTYRAG 2 cut(s) 700, 1532
SmoI CTYRAG 2 cut(s) 700, 1532
Sse9I AATT 8 cut(s) 477, 499, 543, 765, 1198, 1290, 1385, 1450
SseBI AGGCCT 1 cut(s) 577
SsiI CCGC 5 cut(s) 29, 221, 295, 857, 1605
SspMI CTAG 4 cut(s) 594, 1130, 1475, 1502
StuI AGGCCT 1 cut(s) 577
StyD4I CCNGG 3 cut(s) 196, 525, 933
StyI CCWWGG 3 cut(s) 32, 224, 1658
TaaI ACNGT 9 cut(s) 10, 679, 712, 829, 1117, 1270, 1408, 1655, 1710
TaiI ACGT 1 cut(s) 1213
TaqI TCGA 1 cut(s) 1721
TasI AATT 8 cut(s) 477, 499, 543, 765, 1198, 1290, 1385, 1450
TatI WGTACW 2 cut(s) 581, 1611
TauI GCSGC 1 cut(s) 297
TfiI GAWTC 4 cut(s) 538, 953, 1368, 1468
Tru1I TTAA 3 cut(s) 12, 701, 1622
Tru9I TTAA 3 cut(s) 12, 701, 1622
TscAI CASTG 3 cut(s) 909, 1002, 1339
TseFI GTSAC 1 cut(s) 4
TseI GCWGC 5 cut(s) 50, 71, 461, 930, 1349
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 4 cut(s) 492, 619, 945, 1444
TspRI CASTG 3 cut(s) 909, 1002, 1339
Vha464I CTTAAG 1 cut(s) 700
VpaK11BI GGWCC 2 cut(s) 21, 61
XapI RAATTY 1 cut(s) 477
XceI RCATGY 1 cut(s) 1284
XcmI CCANNNNNNNNNTGG 1 cut(s) 157
XspI CTAG 4 cut(s) 594, 1130, 1475, 1502
ZraI GACGTC 1 cut(s) 1211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.