AT1G80690

deSI-like protein At4g17486

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012076
Physical Location & Seq
Reverse (-)
30329039 .. 30330944
1906 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G80690.2

Sequence Viewer

Length: 684 bp
ATGCTTTGCCGGAAAAACTCAAGCTTGGTGGACAGAGGAAATGTTCCGGTTTATCTGAATGTCTACGATCTTACTCCCATTAATGGCTATGCTTACTGGCTTGGTCTTGGCGTTTACCATTCTGGTGTTGAAGTTCATGGTATAGAGTATGCTTATGGAGCTCATGAATATCCAAGCACTGGGATATTCGAAGGGGAGCCGAAGCAATGTGAAGGCTTTACGTTTAGGAAATCGATTTTGATTGGTAAAACGGATCTTGGTCCTTTGGAAGTCAGAGCTACTATGGAGCAACTTGCTGACAACTACAAAGGAAGTTCTTACAATCTTATCACCAAGAACTGCAACCATTTCTGCGATGAAACTTGTATTAAGTTAACTGGGAATCCAATTCCTAGTTGGGTTAACCGCCTTGCCCGAATCGGCTTCATGTGCAACTGTGTGCTTCCTGCGACTATAAACGCGACCAGGTTTGGAAACAACAGAGTCAATCAAGACAAATCATGTGAAGCAGAAAATGAGAAGAAGAAACTGACGAGTGTATCGAGCAGAGAGAGGTCTACCATTGCTACTCCTTCGTCGTCTTCTTCGTCTCCTTCAGTTCAAGTTCGCGGTCGAAGCAGGAAAAGGCGTCCTCGTGCTCTGCAACCTTCATCGCCATTGACTCTCGGATCTTCCTCCGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

227

Amino Acids

25.06

Weight (kDa)

9.21

Isoelectric Point (pI)

43.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C97 PF05903 16 - 153 5.8e-52 PPPDE putative peptidase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012076)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80690 AT1G80690
fragaria_vesca FvH4_6g28860
malus_domestica MD09G1223900.v1.1 MD17G1220800.v1.1
prunus_persica Prupe.3G096200_v2.0.a1
pyrus_communis pycom17g22540
rosa_chinensis RchiOBHm_Chr2g0133411
rosa_laevigata RLG00000019329
rosa_multiflora Rmu_sc0003874.1_g000005
rosa_roxburghii Rroxscaffold_2G00111190
rosa_rugosa Rorug02G0311500 Rorug02G0311600 Rorug02G0311700
rosa_samantha Rh2AG364000 Rh2BG369900 Rh2CG347300 Rh2DG386800
rosa_wichuraiana Rw2G029650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 179
AccI GTMKAC 2 cut(s) 63, 557
AccII CGCG 2 cut(s) 461, 609
AciI CCGC 2 cut(s) 406, 609
AclWI GGATC 2 cut(s) 261, 676
AcuI CTGAAG 1 cut(s) 579
AcyI GRCGYC 1 cut(s) 628
AfiI CCNNNNNNNGG 2 cut(s) 83, 179
AgsI TTSAA 2 cut(s) 131, 602
AjnI CCWGG 1 cut(s) 464
AluBI AGCT 3 cut(s) 24, 161, 278
AluI AGCT 3 cut(s) 24, 161, 278
Alw21I GWGCWC 2 cut(s) 163, 640
Alw26I GTCTC 1 cut(s) 594
AlwI GGATC 2 cut(s) 261, 676
AseI ATTAAT 1 cut(s) 81
AspS9I GGNCC 1 cut(s) 260
AsuHPI GGTGA 1 cut(s) 322
AsuII TTCGAA 1 cut(s) 189
AvaII GGWCC 1 cut(s) 260
BaeI ACNNNNGTAYC 2 cut(s) 522, 555
BanII GRGCYC 1 cut(s) 163
BauI CACGAG 1 cut(s) 633
BbsI GAAGAC 1 cut(s) 573
Bbv12I GWGCWC 2 cut(s) 163, 640
BciT130I CCWGG 1 cut(s) 466
BcoDI GTCTC 1 cut(s) 594
BfaI CTAG 1 cut(s) 393
Bme1390I CCNGG 1 cut(s) 466
Bme18I GGWCC 1 cut(s) 260
BmgT120I GGNCC 1 cut(s) 260
BmiI GGNNCC 1 cut(s) 198
BmrFI CCNGG 1 cut(s) 466
BmrI ACTGGG 2 cut(s) 189, 387
BmuI ACTGGG 2 cut(s) 189, 387
BpiI GAAGAC 1 cut(s) 573
Bpu14I TTCGAA 1 cut(s) 189
BpuEI CTTGAG 1 cut(s) 4
Bsa29I ATCGAT 1 cut(s) 233
BsaHI GRCGYC 1 cut(s) 628
BsaWI WCCGGW 1 cut(s) 46
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 179
Bse1I ACTGG 3 cut(s) 101, 184, 382
Bse3DI GCAATG 2 cut(s) 212, 561
BseBI CCWGG 1 cut(s) 466
BseCI ATCGAT 1 cut(s) 233
BseLI CCNNNNNNNGG 2 cut(s) 83, 179
BseMI GCAATG 2 cut(s) 212, 561
BseNI ACTGG 3 cut(s) 101, 184, 382
Bsh1236I CGCG 2 cut(s) 461, 609
Bsh1285I CGRYCG 1 cut(s) 613
BshVI ATCGAT 1 cut(s) 233
BsiEI CGRYCG 1 cut(s) 613
BsiHKAI GWGCWC 2 cut(s) 163, 640
BsiSI CCGG 2 cut(s) 10, 47
BslI CCNNNNNNNGG 2 cut(s) 83, 179
BsmAI GTCTC 1 cut(s) 594
BsmBI CGTCTC 1 cut(s) 594
Bsp119I TTCGAA 1 cut(s) 189
Bsp1286I GDGCHC 2 cut(s) 163, 640
Bsp143I GATC 3 cut(s) 67, 253, 668
BspACI CCGC 2 cut(s) 406, 609
BspDI ATCGAT 1 cut(s) 233
BspFNI CGCG 2 cut(s) 461, 609
BspHI TCATGA 1 cut(s) 163
BspLI GGNNCC 1 cut(s) 198
BspPI GGATC 2 cut(s) 261, 676
BspT104I TTCGAA 1 cut(s) 189
BsrDI GCAATG 2 cut(s) 212, 561
BsrI ACTGG 3 cut(s) 101, 184, 382
BssMI GATC 3 cut(s) 67, 253, 668
BssNI GRCGYC 1 cut(s) 628
BssSI CACGAG 1 cut(s) 633
Bst2BI CACGAG 1 cut(s) 633
Bst2UI CCWGG 1 cut(s) 466
Bst4CI ACNGT 1 cut(s) 437
BstACI GRCGYC 1 cut(s) 628
BstBI TTCGAA 1 cut(s) 189
BstFNI CGCG 2 cut(s) 461, 609
BstKTI GATC 3 cut(s) 70, 256, 671
BstMAI GTCTC 1 cut(s) 594
BstMBI GATC 3 cut(s) 67, 253, 668
BstMCI CGRYCG 1 cut(s) 613
BstMWI GCNNNNNNNGC 3 cut(s) 158, 429, 615
BstNI CCWGG 1 cut(s) 466
BstSCI CCNGG 1 cut(s) 464
BstUI CGCG 2 cut(s) 461, 609
BstV2I GAAGAC 1 cut(s) 573
BstX2I RGATCY 2 cut(s) 253, 668
BstYI RGATCY 2 cut(s) 253, 668
Bsu15I ATCGAT 1 cut(s) 233
BsuTUI ATCGAT 1 cut(s) 233
BtgZI GCGATG 2 cut(s) 369, 636
BtsIMutI CAGTG 1 cut(s) 177
CciI TCATGA 1 cut(s) 163
Cfr13I GGNCC 1 cut(s) 260
ClaI ATCGAT 1 cut(s) 233
CseI GACGC 1 cut(s) 617
CsiI ACCWGGT 1 cut(s) 464
CspCI CAANNNNNGTGG 2 cut(s) 9, 44
CviAII CATG 4 cut(s) 137, 164, 427, 501
CviJI RGCY 8 cut(s) 24, 87, 100, 161, 199, 216, 278, 423
CviKI_1 RGCY 8 cut(s) 24, 87, 100, 161, 199, 216, 278, 423
DpnI GATC 3 cut(s) 69, 255, 670
DpnII GATC 3 cut(s) 67, 253, 668
Ecl136II GAGCTC 1 cut(s) 161
Eco24I GRGCYC 1 cut(s) 163
Eco47I GGWCC 1 cut(s) 260
Eco53kI GAGCTC 1 cut(s) 161
Eco57I CTGAAG 1 cut(s) 579
EcoICRI GAGCTC 1 cut(s) 161
EcoRII CCWGG 1 cut(s) 464
EcoT38I GRGCYC 1 cut(s) 163
Esp3I CGTCTC 1 cut(s) 594
FaeI CATG 4 cut(s) 140, 167, 430, 504
FatI CATG 4 cut(s) 136, 163, 426, 500
FblI GTMKAC 2 cut(s) 63, 557
FriOI GRGCYC 1 cut(s) 163
FspBI CTAG 1 cut(s) 393
HapII CCGG 2 cut(s) 10, 47
HgaI GACGC 1 cut(s) 617
Hin1I GRCGYC 1 cut(s) 628
Hin1II CATG 4 cut(s) 140, 167, 430, 504
HincII GTYRAC 2 cut(s) 375, 403
HindII GTYRAC 2 cut(s) 375, 403
HindIII AAGCTT 1 cut(s) 22
HinfI GANTC 4 cut(s) 382, 417, 483, 661
HpaI GTTAAC 2 cut(s) 375, 403
HpaII CCGG 2 cut(s) 10, 47
HphI GGTGA 1 cut(s) 322
Hpy166II GTNNAC 6 cut(s) 31, 64, 115, 375, 403, 558
Hpy188I TCNGA 3 cut(s) 57, 275, 668
Hpy188III TCNNGA 2 cut(s) 164, 491
Hpy8I GTNNAC 6 cut(s) 31, 64, 115, 375, 403, 558
Hpy99I CGWCG 1 cut(s) 580
HpyAV CCTTC 5 cut(s) 185, 206, 582, 603, 657
HpyCH4III ACNGT 1 cut(s) 437
HpyCH4IV ACGT 1 cut(s) 221
HpyCH4V TGCA 3 cut(s) 342, 432, 643
HpyF10VI GCNNNNNNNGC 3 cut(s) 158, 429, 615
HpySE526I ACGT 1 cut(s) 221
Hsp92I GRCGYC 1 cut(s) 628
Hsp92II CATG 4 cut(s) 140, 167, 430, 504
KspAI GTTAAC 2 cut(s) 375, 403
Kzo9I GATC 3 cut(s) 67, 253, 668
LmnI GCTCC 3 cut(s) 158, 196, 286
MabI ACCWGGT 1 cut(s) 464
MaeI CTAG 1 cut(s) 393
MaeII ACGT 1 cut(s) 221
MalI GATC 3 cut(s) 69, 255, 670
MboI GATC 3 cut(s) 67, 253, 668
MboII GAAGA 5 cut(s) 532, 535, 573, 576, 663
MflI RGATCY 2 cut(s) 253, 668
MhlI GDGCHC 2 cut(s) 163, 640
MluCI AATT 1 cut(s) 387
MlyI GAGTC 2 cut(s) 492, 655
MnlI CCTC 3 cut(s) 29, 546, 642
MseI TTAA 4 cut(s) 81, 369, 374, 402
MslI CAYNNNNRTG 1 cut(s) 123
MspI CCGG 2 cut(s) 10, 47
MspR9I CCNGG 1 cut(s) 466
MvaI CCWGG 1 cut(s) 466
MvnI CGCG 2 cut(s) 461, 609
MwoI GCNNNNNNNGC 3 cut(s) 158, 429, 615
NdeII GATC 3 cut(s) 67, 253, 668
NlaIII CATG 4 cut(s) 140, 167, 430, 504
NlaIV GGNNCC 1 cut(s) 198
NspV TTCGAA 1 cut(s) 189
PagI TCATGA 1 cut(s) 163
PcsI WCGNNNNNNNCGW 2 cut(s) 539, 584
PfeI GAWTC 2 cut(s) 382, 417
PflMI CCANNNNNTGG 1 cut(s) 179
PleI GAGTC 2 cut(s) 491, 655
PpsI GAGTC 2 cut(s) 491, 655
PshBI ATTAAT 1 cut(s) 81
Psp124BI GAGCTC 1 cut(s) 163
Psp6I CCWGG 1 cut(s) 464
PspGI CCWGG 1 cut(s) 464
PspN4I GGNNCC 1 cut(s) 198
PspPI GGNCC 1 cut(s) 260
PsuI RGATCY 2 cut(s) 253, 668
RseI CAYNNNNRTG 1 cut(s) 123
SacI GAGCTC 1 cut(s) 163
SaqAI TTAA 4 cut(s) 81, 369, 374, 402
Sau3AI GATC 3 cut(s) 67, 253, 668
Sau96I GGNCC 1 cut(s) 260
SchI GAGTC 2 cut(s) 492, 655
ScrFI CCNGG 1 cut(s) 466
SduI GDGCHC 2 cut(s) 163, 640
SetI ASST 7 cut(s) 26, 163, 224, 280, 470, 557, 649
SexAI ACCWGGT 1 cut(s) 464
SfuI TTCGAA 1 cut(s) 189
SinI GGWCC 1 cut(s) 260
SmiMI CAYNNNNRTG 1 cut(s) 123
SmlI CTYRAG 1 cut(s) 19
SmoI CTYRAG 1 cut(s) 19
Sse9I AATT 1 cut(s) 387
SsiI CCGC 2 cut(s) 406, 609
SspMI CTAG 1 cut(s) 393
SstI GAGCTC 1 cut(s) 163
StyD4I CCNGG 1 cut(s) 464
TaaI ACNGT 1 cut(s) 437
TaiI ACGT 1 cut(s) 224
TaqI TCGA 4 cut(s) 189, 233, 542, 613
TasI AATT 1 cut(s) 387
TfiI GAWTC 2 cut(s) 382, 417
Tru1I TTAA 4 cut(s) 81, 369, 374, 402
Tru9I TTAA 4 cut(s) 81, 369, 374, 402
TscAI CASTG 1 cut(s) 184
TspDTI ATGAA 5 cut(s) 125, 180, 372, 415, 639
TspGWI ACGGA 2 cut(s) 266, 667
TspRI CASTG 1 cut(s) 184
Van91I CCANNNNNTGG 1 cut(s) 179
VpaK11BI GGWCC 1 cut(s) 260
VspI ATTAAT 1 cut(s) 81
XcmI CCANNNNNNNNNTGG 1 cut(s) 393
XmiI GTMKAC 2 cut(s) 63, 557
XspI CTAG 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.