Rorug02G0311600

deSI-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0012076
Physical Location & Seq
Reverse (-)
37480826 .. 37483054
2229 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0311600.1

Sequence Viewer

Length: 1002 bp
ATGAGGGAAGACGACTCCAATTGGTTCTCAAGATGGGAAGAACAACTCCCATCTCCTGAGGAGCTTATGCCCTTGTCCCAAACCCTAATAAGTCCTGATCTTGCTCTGGCTTTTGACATCAGATCAAACCCCAATCCTAATCCCAATCCCAATCCCAATCCCATTACCAATACCAATACCACCAGTAGCCCACAGCACGCGCCCACACCTCCACCCCCACCGGTCAGTTCTTTGCCTCCTGCTACCCCGACCCACCCCAACTCCTCTGCTGATTTTGCCGATTCTGCTGACTTGGGCTCCGGCGGAGGAGGAGGAGGTGCGCCCGGCGATGAGCCGGCCCGCACCCTTAAGCGGCCTCGCCTGGTGTGGACCCCACAGCTCCACAAGCGCTTTGTGGATGCCGTCGCCCACTTGGGGATCAAGAATGCCGTCCCCAAGACCATAATGCAGCTGATGAGTGTGGATGGGTTGACTAGGGAGAATGTTGCCAGCCATTTGCAGAAGTACCGCCTTTATCTCAAACGAATGCAGGGATTATCTGCTGGGACTGGTGGTGGCGGCGGCGGCGGTGGAGGTTCCGCTGATCCTGCCACTGACCATTTATTTGCCAGCTCACCAGTTCCAGCTCATTTCTTACACCCAGGAAGGCCCAATTCCGACCATTTCCTGCCGTTTGTTCCGGTGGCTCTGCAGCATCACCATCAGCAGCAGCAGCAGCAGCAGCACATGGCAGCAGCTGCGGCCGCAGCTGCCACCCATCCCCAGATGCAGCAGACTCCTCAGTATCACCATCACAGGCAGCCGCAGGTGGGGCATTTTGGCTCTCCACCAAATCCAAATGGGCAATTTGAACATCCATTCCTGGCGAGGCAGTCACAGGCAGTGCATAGGATGGGGGCACCAATTCACAGTGCAGCTGTGCCAGGGTATATTGAGGACATGGAATCAGCTAATGCAACTGGCAGGAAAGTTCTTACTCTTTTTCCTACTGGGGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

333

Amino Acids

35.68

Weight (kDa)

6.59

Isoelectric Point (pI)

59.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 121 - 170 1.2e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012076)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80690 AT1G80690
fragaria_vesca FvH4_6g28860
malus_domestica MD09G1223900.v1.1 MD17G1220800.v1.1
prunus_persica Prupe.3G096200_v2.0.a1
pyrus_communis pycom17g22540
rosa_chinensis RchiOBHm_Chr2g0133411
rosa_laevigata RLG00000019329
rosa_multiflora Rmu_sc0003874.1_g000005
rosa_roxburghii Rroxscaffold_2G00111190
rosa_rugosa Rorug02G0311500 Rorug02G0311600 Rorug02G0311700
rosa_samantha Rh2AG364000 Rh2BG369900 Rh2CG347300 Rh2DG386800
rosa_wichuraiana Rw2G029650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 796
Acc36I ACCTGC 1 cut(s) 796
AccB1I GGYRCC 1 cut(s) 898
AccII CGCG 1 cut(s) 200
AclWI GGATC 2 cut(s) 425, 578
AcoI YGGCCR 1 cut(s) 741
AfaI GTAC 1 cut(s) 506
AfeI AGCGCT 1 cut(s) 389
AfiI CCNNNNNNNGG 3 cut(s) 351, 414, 809
AflII CTTAAG 1 cut(s) 347
AgeI ACCGGT 1 cut(s) 220
AgsI TTSAA 1 cut(s) 851
AjnI CCWGG 4 cut(s) 360, 640, 861, 922
AloI GAACNNNNNNTCC 2 cut(s) 843, 875
AluBI AGCT 9 cut(s) 64, 379, 451, 612, 626, 737, 749, 917, 950
AluI AGCT 9 cut(s) 64, 379, 451, 612, 626, 737, 749, 917, 950
AlwI GGATC 2 cut(s) 425, 578
AlwNI CAGNNNCTG 1 cut(s) 737
Aor51HI AGCGCT 1 cut(s) 389
AoxI GGCC 4 cut(s) 336, 353, 647, 741
ArsI GACNNNNNNTTYG 2 cut(s) 587, 619
AsiGI ACCGGT 1 cut(s) 220
AspLEI GCGC 3 cut(s) 202, 322, 390
AspS9I GGNCC 3 cut(s) 337, 369, 648
AsuC2I CCSGG 1 cut(s) 324
AsuHPI GGTGA 3 cut(s) 606, 689, 779
AvaII GGWCC 1 cut(s) 369
AxyI CCTNAGG 1 cut(s) 57
BaeGI GKGCMC 1 cut(s) 901
BanI GGYRCC 1 cut(s) 898
BanII GRGCYC 1 cut(s) 299
BbsI GAAGAC 1 cut(s) 15
BccI CCATC 7 cut(s) 27, 58, 458, 708, 765, 798, 886
BceAI ACGGC 3 cut(s) 386, 413, 655
BciT130I CCWGG 4 cut(s) 362, 642, 863, 924
BcnI CCSGG 1 cut(s) 324
BfaI CTAG 1 cut(s) 474
BfmI CTRYAG 1 cut(s) 689
BfoI RGCGCY 1 cut(s) 391
BfrI CTTAAG 1 cut(s) 347
BfuAI ACCTGC 1 cut(s) 796
Bme1390I CCNGG 5 cut(s) 324, 362, 642, 863, 924
Bme18I GGWCC 1 cut(s) 369
BmgT120I GGNCC 3 cut(s) 337, 369, 648
BmiI GGNNCC 4 cut(s) 298, 371, 577, 900
BmrFI CCNGG 5 cut(s) 324, 362, 642, 863, 924
BmrI ACTGGG 1 cut(s) 999
BmsI GCATC 3 cut(s) 388, 703, 756
BmuI ACTGGG 1 cut(s) 999
BpiI GAAGAC 1 cut(s) 15
BpuEI CTTGAG 1 cut(s) 13
BpuMI CCSGG 1 cut(s) 324
BsaJI CCNNGG 2 cut(s) 640, 923
BsaWI WCCGGW 2 cut(s) 220, 679
BsaXI ACNNNNNCTCC 4 cut(s) 245, 275, 281, 311
Bsc4I CCNNNNNNNGG 3 cut(s) 351, 414, 809
Bse118I RCCGGY 2 cut(s) 220, 334
Bse1I ACTGG 5 cut(s) 183, 553, 617, 964, 994
Bse21I CCTNAGG 1 cut(s) 57
BseBI CCWGG 4 cut(s) 362, 642, 863, 924
BseDI CCNNGG 2 cut(s) 640, 923
BseGI GGATG 6 cut(s) 403, 469, 757, 853, 897, 1000
BseLI CCNNNNNNNGG 3 cut(s) 351, 414, 809
BseMII CTCAG 2 cut(s) 48, 794
BseNI ACTGG 5 cut(s) 183, 553, 617, 964, 994
BseRI GAGGAG 6 cut(s) 74, 253, 321, 324, 327, 768
BseSI GKGCMC 1 cut(s) 901
BseX3I CGGCCG 1 cut(s) 741
BseYI CCCAGC 1 cut(s) 542
BsgI GTGCAG 1 cut(s) 933
Bsh1236I CGCG 1 cut(s) 200
Bsh1285I CGRYCG 1 cut(s) 744
BshFI GGCC 4 cut(s) 338, 355, 649, 743
BshNI GGYRCC 1 cut(s) 898
BshTI ACCGGT 1 cut(s) 220
BsiEI CGRYCG 1 cut(s) 744
BsiSI CCGG 5 cut(s) 221, 300, 324, 335, 680
BslFI GGGAC 3 cut(s) 61, 416, 559
BslI CCNNNNNNNGG 3 cut(s) 351, 414, 809
BsmFI GGGAC 3 cut(s) 61, 416, 559
BsmI GAATGC 2 cut(s) 430, 531
BsnI GGCC 4 cut(s) 338, 355, 649, 743
Bsp1286I GDGCHC 2 cut(s) 299, 901
Bsp143I GATC 4 cut(s) 97, 122, 417, 583
BspANI GGCC 4 cut(s) 338, 355, 649, 743
BspCNI CTCAG 2 cut(s) 49, 793
BspFNI CGCG 1 cut(s) 200
BspLI GGNNCC 4 cut(s) 298, 371, 577, 900
BspMAI CTGCAG 1 cut(s) 693
BspMI ACCTGC 1 cut(s) 796
BspPI GGATC 2 cut(s) 425, 578
BspT107I GGYRCC 1 cut(s) 898
BspTI CTTAAG 1 cut(s) 347
BsrFI RCCGGY 2 cut(s) 220, 334
BsrI ACTGG 5 cut(s) 183, 553, 617, 964, 994
BssAI RCCGGY 2 cut(s) 220, 334
BssECI CCNNGG 2 cut(s) 640, 923
BssMI GATC 4 cut(s) 97, 122, 417, 583
Bst2UI CCWGG 4 cut(s) 362, 642, 863, 924
Bst4CI ACNGT 1 cut(s) 911
BstAFI CTTAAG 1 cut(s) 347
BstAPI GCANNNNNTGC 1 cut(s) 737
BstC8I GCNNGC 5 cut(s) 198, 336, 340, 490, 610
BstDEI CTNAG 2 cut(s) 57, 780
BstF5I GGATG 6 cut(s) 403, 469, 757, 853, 897, 1000
BstFNI CGCG 1 cut(s) 200
BstH2I RGCGCY 1 cut(s) 391
BstHHI GCGC 3 cut(s) 202, 322, 390
BstKTI GATC 4 cut(s) 100, 125, 420, 586
BstMBI GATC 4 cut(s) 97, 122, 417, 583
BstMCI CGRYCG 1 cut(s) 744
BstNI CCWGG 4 cut(s) 362, 642, 863, 924
BstSCI CCNGG 5 cut(s) 322, 360, 640, 861, 922
BstSFI CTRYAG 1 cut(s) 689
BstSLI GKGCMC 1 cut(s) 901
BstUI CGCG 1 cut(s) 200
BstV2I GAAGAC 1 cut(s) 15
BstZI CGGCCG 1 cut(s) 741
Bsu36I CCTNAGG 1 cut(s) 57
BsuRI GGCC 4 cut(s) 338, 355, 649, 743
BtgZI GCGATG 1 cut(s) 342
BtsCI GGATG 6 cut(s) 403, 469, 757, 853, 897, 1000
BtsI GCAGTG 1 cut(s) 888
BtsIMutI CAGTG 3 cut(s) 591, 888, 916
BveI ACCTGC 1 cut(s) 796
Cac8I GCNNGC 5 cut(s) 198, 336, 340, 490, 610
CaiI CAGNNNCTG 1 cut(s) 737
CciNI GCGGCCGC 1 cut(s) 741
CfoI GCGC 3 cut(s) 202, 322, 390
Cfr10I RCCGGY 2 cut(s) 220, 334
Cfr13I GGNCC 3 cut(s) 337, 369, 648
Csp6I GTAC 1 cut(s) 505
CspAI ACCGGT 1 cut(s) 220
CviAII CATG 2 cut(s) 727, 940
CviQI GTAC 1 cut(s) 505
DdeI CTNAG 2 cut(s) 57, 780
DpnI GATC 4 cut(s) 99, 124, 419, 585
DpnII GATC 4 cut(s) 97, 122, 417, 583
EaeI YGGCCR 1 cut(s) 741
EagI CGGCCG 1 cut(s) 741
EciI GGCGGA 1 cut(s) 318
EclXI CGGCCG 1 cut(s) 741
Eco24I GRGCYC 1 cut(s) 299
Eco47I GGWCC 1 cut(s) 369
Eco47III AGCGCT 1 cut(s) 389
Eco52I CGGCCG 1 cut(s) 741
Eco81I CCTNAGG 1 cut(s) 57
EcoRII CCWGG 4 cut(s) 360, 640, 861, 922
EcoT38I GRGCYC 1 cut(s) 299
FaeI CATG 2 cut(s) 730, 943
FaiI YATR 6 cut(s) 68, 443, 728, 888, 930, 941
FaqI GGGAC 3 cut(s) 61, 416, 559
FatI CATG 2 cut(s) 726, 939
FauI CCCGC 1 cut(s) 347
FokI GGATG 5 cut(s) 410, 476, 744, 840, 904
FriOI GRGCYC 1 cut(s) 299
FspBI CTAG 1 cut(s) 474
GlaI GCGC 3 cut(s) 201, 321, 389
GsaI CCCAGC 1 cut(s) 546
HaeII RGCGCY 1 cut(s) 391
HaeIII GGCC 4 cut(s) 338, 355, 649, 743
HapII CCGG 5 cut(s) 221, 300, 324, 335, 680
HhaI GCGC 3 cut(s) 202, 322, 390
Hin1II CATG 2 cut(s) 730, 943
Hin6I GCGC 3 cut(s) 200, 320, 388
HinP1I GCGC 3 cut(s) 200, 320, 388
HincII GTYRAC 1 cut(s) 471
HindII GTYRAC 1 cut(s) 471
HinfI GANTC 4 cut(s) 14, 281, 775, 944
HpaII CCGG 5 cut(s) 221, 300, 324, 335, 680
HphI GGTGA 3 cut(s) 606, 689, 779
Hpy166II GTNNAC 2 cut(s) 369, 471
Hpy188I TCNGA 2 cut(s) 122, 658
Hpy188III TCNNGA 4 cut(s) 30, 56, 95, 421
Hpy8I GTNNAC 2 cut(s) 369, 471
Hpy99I CGWCG 1 cut(s) 407
HpyAV CCTTC 1 cut(s) 639
HpyCH4III ACNGT 1 cut(s) 911
HpyCH4V TGCA 8 cut(s) 448, 499, 529, 691, 769, 886, 914, 956
HpyF3I CTNAG 2 cut(s) 57, 780
Hsp92II CATG 2 cut(s) 730, 943
HspAI GCGC 3 cut(s) 200, 320, 388
KroI GCCGGC 1 cut(s) 334
KroNI GCCGGC 1 cut(s) 336
Kzo9I GATC 4 cut(s) 97, 122, 417, 583
LmnI GCTCC 3 cut(s) 61, 302, 384
LweI GCATC 3 cut(s) 388, 703, 756
MaeI CTAG 1 cut(s) 474
MaeIII GTNAC 1 cut(s) 873
MalI GATC 4 cut(s) 99, 124, 419, 585
MboI GATC 4 cut(s) 97, 122, 417, 583
MboII GAAGA 2 cut(s) 20, 50
MfeI CAATTG 1 cut(s) 19
MhlI GDGCHC 2 cut(s) 299, 901
MluCI AATT 4 cut(s) 19, 652, 845, 903
MlyI GAGTC 2 cut(s) 8, 769
MmeI TCCRAC 1 cut(s) 681
MroNI GCCGGC 1 cut(s) 334
MseI TTAA 1 cut(s) 348
MspA1I CMGCKG 5 cut(s) 451, 581, 737, 749, 917
MspCI CTTAAG 1 cut(s) 347
MspI CCGG 5 cut(s) 221, 300, 324, 335, 680
MspR9I CCNGG 5 cut(s) 324, 362, 642, 863, 924
MunI CAATTG 1 cut(s) 19
Mva1269I GAATGC 2 cut(s) 430, 531
MvaI CCWGG 4 cut(s) 362, 642, 863, 924
MvnI CGCG 1 cut(s) 200
NaeI GCCGGC 1 cut(s) 336
NciI CCSGG 1 cut(s) 324
NdeII GATC 4 cut(s) 97, 122, 417, 583
NgoMIV GCCGGC 1 cut(s) 334
NlaIII CATG 2 cut(s) 730, 943
NlaIV GGNNCC 4 cut(s) 298, 371, 577, 900
NmuCI GTSAC 1 cut(s) 873
NotI GCGGCCGC 1 cut(s) 741
PaqCI CACCTGC 1 cut(s) 796
PctI GAATGC 2 cut(s) 430, 531
PdiI GCCGGC 1 cut(s) 336
PfeI GAWTC 2 cut(s) 281, 944
PinAI ACCGGT 1 cut(s) 220
PleI GAGTC 2 cut(s) 8, 769
PpsI GAGTC 2 cut(s) 8, 769
Psp6I CCWGG 4 cut(s) 360, 640, 861, 922
PspFI CCCAGC 1 cut(s) 542
PspGI CCWGG 4 cut(s) 360, 640, 861, 922
PspN4I GGNNCC 4 cut(s) 298, 371, 577, 900
PspPI GGNCC 3 cut(s) 337, 369, 648
PstI CTGCAG 1 cut(s) 693
PstNI CAGNNNCTG 1 cut(s) 737
PvuII CAGCTG 4 cut(s) 451, 737, 749, 917
RsaI GTAC 1 cut(s) 506
RsaNI GTAC 1 cut(s) 505
SaqAI TTAA 1 cut(s) 348
Sau3AI GATC 4 cut(s) 97, 122, 417, 583
Sau96I GGNCC 3 cut(s) 337, 369, 648
SchI GAGTC 2 cut(s) 8, 769
ScrFI CCNGG 5 cut(s) 324, 362, 642, 863, 924
SduI GDGCHC 2 cut(s) 299, 901
SfaNI GCATC 3 cut(s) 388, 703, 756
SfcI CTRYAG 1 cut(s) 689
SinI GGWCC 1 cut(s) 369
SmlI CTYRAG 2 cut(s) 28, 347
SmoI CTYRAG 2 cut(s) 28, 347
Sse9I AATT 4 cut(s) 19, 652, 845, 903
SspMI CTAG 1 cut(s) 474
StyD4I CCNGG 5 cut(s) 322, 360, 640, 861, 922
TaaI ACNGT 1 cut(s) 911
TasI AATT 4 cut(s) 19, 652, 845, 903
TauI GCSGC 7 cut(s) 355, 561, 564, 567, 743, 746, 805
TfiI GAWTC 2 cut(s) 281, 944
Tru1I TTAA 1 cut(s) 348
Tru9I TTAA 1 cut(s) 348
TscAI CASTG 3 cut(s) 598, 888, 916
TseFI GTSAC 1 cut(s) 873
Tsp45I GTSAC 1 cut(s) 873
TspRI CASTG 3 cut(s) 598, 888, 916
Vha464I CTTAAG 1 cut(s) 347
VpaK11BI GGWCC 1 cut(s) 369
XspI CTAG 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.