Rh2DG386800

deSI-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0012076
Physical Location & Seq
Forward (+)
55931901 .. 55933910
2010 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG386800.1

Sequence Viewer

Length: 507 bp
ATGCTGTGTCGAAAGAGTGTCTCCACTGATGACACTGGATCCATGCCTGTGTACTTGAACGTTTATGATCTGACACCTTATAATGGCTACGCTTATTGGCTTGGTCTTGGAGTCTACCATTCTGGTGTACAAGTCCATGGGATTGAGTATGCATTTGGAGCTCATGAGTATCCAACAACTGGGATTTTTGAAGGGGAACCAAAAAAGTGTGAGGGATTTACATTTAGGAAAGCAATTTTGATTGGGAAAACGGATGTTGGGCCTTTAGAGGTGAGAACGGTGATGGAACAGCTTGCTGAGCAATATAGAGGGAATGCATACAACTTGATCACCAAAAACTGCAACCATTTCTGCAATGATGCTTGTATGAGATTGACTGGGAACCCAATTCCAAATTGGGTTAATCGGCTTGCAAGAATCGGTTTTCCCTATTGGCTTAAAGAAAGCTATGCAACCATGAACTTTTGTGATATCATTGGACTGTTTCAGTTTGGAGAAAGGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

168

Amino Acids

19.11

Weight (kDa)

6.41

Isoelectric Point (pI)

19.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C97 PF05903 16 - 142 1.3e-51 PPPDE putative peptidase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012076)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80690 AT1G80690
fragaria_vesca FvH4_6g28860
malus_domestica MD09G1223900.v1.1 MD17G1220800.v1.1
prunus_persica Prupe.3G096200_v2.0.a1
pyrus_communis pycom17g22540
rosa_chinensis RchiOBHm_Chr2g0133411
rosa_laevigata RLG00000019329
rosa_multiflora Rmu_sc0003874.1_g000005
rosa_roxburghii Rroxscaffold_2G00111190
rosa_rugosa Rorug02G0311500 Rorug02G0311600 Rorug02G0311700
rosa_samantha Rh2AG364000 Rh2BG369900 Rh2CG347300 Rh2DG386800
rosa_wichuraiana Rw2G029650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 81
AccB7I CCANNNNNTGG 1 cut(s) 179
AccI GTMKAC 1 cut(s) 114
AclI AACGTT 1 cut(s) 60
AclWI GGATC 2 cut(s) 33, 46
AfaI GTAC 2 cut(s) 53, 129
AfiI CCNNNNNNNGG 2 cut(s) 83, 179
AgsI TTSAA 2 cut(s) 58, 191
AluBI AGCT 3 cut(s) 161, 292, 447
AluI AGCT 3 cut(s) 161, 292, 447
Alw21I GWGCWC 1 cut(s) 163
Alw26I GTCTC 1 cut(s) 25
AlwI GGATC 2 cut(s) 33, 46
AoxI GGCC 1 cut(s) 260
AspS9I GGNCC 1 cut(s) 260
AsuHPI GGTGA 3 cut(s) 283, 292, 322
BamHI GGATCC 1 cut(s) 38
BanII GRGCYC 1 cut(s) 163
Bbv12I GWGCWC 1 cut(s) 163
BccI CCATC 1 cut(s) 277
BciVI GTATCC 1 cut(s) 180
BclI TGATCA 1 cut(s) 327
BcoDI GTCTC 1 cut(s) 25
BfuI GTATCC 1 cut(s) 180
BlpI GCTNAGC 1 cut(s) 297
BmgT120I GGNCC 1 cut(s) 260
BmiI GGNNCC 3 cut(s) 40, 198, 383
BmrI ACTGGG 2 cut(s) 189, 387
BmsI GCATC 1 cut(s) 349
BmuI ACTGGG 2 cut(s) 189, 387
Bpu1102I GCTNAGC 1 cut(s) 297
BsaJI CCNNGG 1 cut(s) 136
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 179
Bse1I ACTGG 3 cut(s) 40, 184, 382
Bse3DI GCAATG 1 cut(s) 361
BseDI CCNNGG 1 cut(s) 136
BseGI GGATG 1 cut(s) 259
BseLI CCNNNNNNNGG 2 cut(s) 83, 179
BseMI GCAATG 1 cut(s) 361
BseMII CTCAG 1 cut(s) 288
BseNI ACTGG 3 cut(s) 40, 184, 382
BshFI GGCC 1 cut(s) 262
BsiHKAI GWGCWC 1 cut(s) 163
BslI CCNNNNNNNGG 2 cut(s) 83, 179
BsmAI GTCTC 1 cut(s) 25
BsmI GAATGC 1 cut(s) 319
BsnI GGCC 1 cut(s) 262
Bsp1286I GDGCHC 1 cut(s) 163
Bsp1407I TGTACA 1 cut(s) 127
Bsp143I GATC 3 cut(s) 38, 67, 327
Bsp1720I GCTNAGC 1 cut(s) 297
Bsp19I CCATGG 1 cut(s) 136
BspANI GGCC 1 cut(s) 262
BspCNI CTCAG 1 cut(s) 289
BspHI TCATGA 1 cut(s) 163
BspLI GGNNCC 3 cut(s) 40, 198, 383
BspPI GGATC 2 cut(s) 33, 46
BsrDI GCAATG 1 cut(s) 361
BsrGI TGTACA 1 cut(s) 127
BsrI ACTGG 3 cut(s) 40, 184, 382
BssECI CCNNGG 1 cut(s) 136
BssMI GATC 3 cut(s) 38, 67, 327
BssT1I CCWWGG 1 cut(s) 136
Bst4CI ACNGT 2 cut(s) 280, 483
BstAUI TGTACA 1 cut(s) 127
BstC8I GCNNGC 2 cut(s) 294, 411
BstDEI CTNAG 1 cut(s) 297
BstDSI CCRYGG 1 cut(s) 136
BstF5I GGATG 1 cut(s) 259
BstKTI GATC 3 cut(s) 41, 70, 330
BstMAI GTCTC 1 cut(s) 25
BstMBI GATC 3 cut(s) 38, 67, 327
BstMWI GCNNNNNNNGC 2 cut(s) 158, 298
BstX2I RGATCY 1 cut(s) 38
BstYI RGATCY 1 cut(s) 38
BsuI GTATCC 1 cut(s) 180
BsuRI GGCC 1 cut(s) 262
BtgI CCRYGG 1 cut(s) 136
BtsCI GGATG 1 cut(s) 259
BtsIMutI CAGTG 2 cut(s) 24, 33
Cac8I GCNNGC 2 cut(s) 294, 411
CciI TCATGA 1 cut(s) 163
Cfr13I GGNCC 1 cut(s) 260
Csp6I GTAC 2 cut(s) 52, 128
CviAII CATG 4 cut(s) 43, 137, 164, 457
CviJI RGCY 9 cut(s) 87, 100, 161, 262, 292, 409, 436, 447, 502
CviKI_1 RGCY 9 cut(s) 87, 100, 161, 262, 292, 409, 436, 447, 502
CviQI GTAC 2 cut(s) 52, 128
DdeI CTNAG 1 cut(s) 297
DpnI GATC 3 cut(s) 40, 69, 329
DpnII GATC 3 cut(s) 38, 67, 327
Ecl136II GAGCTC 1 cut(s) 161
Eco130I CCWWGG 1 cut(s) 136
Eco24I GRGCYC 1 cut(s) 163
Eco32I GATATC 1 cut(s) 472
Eco53kI GAGCTC 1 cut(s) 161
EcoICRI GAGCTC 1 cut(s) 161
EcoRV GATATC 1 cut(s) 472
EcoT14I CCWWGG 1 cut(s) 136
EcoT22I ATGCAT 2 cut(s) 154, 319
EcoT38I GRGCYC 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 136
FaeI CATG 4 cut(s) 46, 140, 167, 460
FatI CATG 4 cut(s) 42, 136, 163, 456
FbaI TGATCA 1 cut(s) 327
FblI GTMKAC 1 cut(s) 114
FokI GGATG 1 cut(s) 266
FriOI GRGCYC 1 cut(s) 163
HaeIII GGCC 1 cut(s) 262
Hin1II CATG 4 cut(s) 46, 140, 167, 460
HinfI GANTC 2 cut(s) 111, 417
HphI GGTGA 3 cut(s) 283, 292, 322
Hpy166II GTNNAC 3 cut(s) 52, 115, 128
Hpy188I TCNGA 1 cut(s) 72
Hpy188III TCNNGA 1 cut(s) 164
Hpy8I GTNNAC 3 cut(s) 52, 115, 128
HpyAV CCTTC 1 cut(s) 185
HpyCH4III ACNGT 2 cut(s) 280, 483
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 6 cut(s) 152, 317, 342, 354, 413, 452
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 298
HpyF3I CTNAG 1 cut(s) 297
HpySE526I ACGT 1 cut(s) 60
Hsp92II CATG 4 cut(s) 46, 140, 167, 460
Ksp22I TGATCA 1 cut(s) 327
Kzo9I GATC 3 cut(s) 38, 67, 327
LmnI GCTCC 1 cut(s) 158
LpnPI CCDG 5 cut(s) 21, 60, 108, 165, 363
LweI GCATC 1 cut(s) 349
MaeII ACGT 1 cut(s) 60
MalI GATC 3 cut(s) 40, 69, 329
MboI GATC 3 cut(s) 38, 67, 327
MflI RGATCY 1 cut(s) 38
MhlI GDGCHC 1 cut(s) 163
MluCI AATT 3 cut(s) 234, 387, 394
MlyI GAGTC 1 cut(s) 120
MmeI TCCRAC 1 cut(s) 197
MnlI CCTC 3 cut(s) 205, 262, 302
Mph1103I ATGCAT 2 cut(s) 154, 319
MseI TTAA 2 cut(s) 402, 438
MslI CAYNNNNRTG 2 cut(s) 47, 123
Mva1269I GAATGC 1 cut(s) 319
MwoI GCNNNNNNNGC 2 cut(s) 158, 298
NcoI CCATGG 1 cut(s) 136
NdeII GATC 3 cut(s) 38, 67, 327
NlaIII CATG 4 cut(s) 46, 140, 167, 460
NlaIV GGNNCC 3 cut(s) 40, 198, 383
NsiI ATGCAT 2 cut(s) 154, 319
PagI TCATGA 1 cut(s) 163
PctI GAATGC 1 cut(s) 319
PfeI GAWTC 1 cut(s) 417
PflMI CCANNNNNTGG 1 cut(s) 179
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
PsiI TTATAA 1 cut(s) 81
Psp124BI GAGCTC 1 cut(s) 163
Psp1406I AACGTT 1 cut(s) 60
PspN4I GGNNCC 3 cut(s) 40, 198, 383
PspPI GGNCC 1 cut(s) 260
PsuI RGATCY 1 cut(s) 38
RsaI GTAC 2 cut(s) 53, 129
RsaNI GTAC 2 cut(s) 52, 128
RseI CAYNNNNRTG 2 cut(s) 47, 123
SacI GAGCTC 1 cut(s) 163
SaqAI TTAA 2 cut(s) 402, 438
Sau3AI GATC 3 cut(s) 38, 67, 327
Sau96I GGNCC 1 cut(s) 260
SchI GAGTC 1 cut(s) 120
SduI GDGCHC 1 cut(s) 163
SetI ASST 6 cut(s) 63, 79, 163, 273, 294, 449
SfaNI GCATC 1 cut(s) 349
SmiMI CAYNNNNRTG 2 cut(s) 47, 123
Sse9I AATT 3 cut(s) 234, 387, 394
SstI GAGCTC 1 cut(s) 163
StyI CCWWGG 1 cut(s) 136
TaaI ACNGT 2 cut(s) 280, 483
TaiI ACGT 1 cut(s) 63
TaqI TCGA 1 cut(s) 10
TasI AATT 3 cut(s) 234, 387, 394
TatI WGTACW 2 cut(s) 51, 127
TfiI GAWTC 1 cut(s) 417
Tru1I TTAA 2 cut(s) 402, 438
Tru9I TTAA 2 cut(s) 402, 438
TscAI CASTG 2 cut(s) 31, 40
TspDTI ATGAA 1 cut(s) 473
TspGWI ACGGA 1 cut(s) 266
TspRI CASTG 2 cut(s) 31, 40
Van91I CCANNNNNTGG 1 cut(s) 179
XcmI CCANNNNNNNNNTGG 1 cut(s) 393
XmiI GTMKAC 1 cut(s) 114
Zsp2I ATGCAT 2 cut(s) 154, 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.