MD17G1220800.v1.1

deSI-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0012076
Physical Location & Seq
Reverse (-)
26974876 .. 26977165
2290 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1220800.v1.1.491

Sequence Viewer

Length: 690 bp
ATGTTGTGTAAAAAGAGTGGGTGCAGAACTGCCATTGAGGAGGATGAGGAAGACAGTGGATCAGTGCCTGTATACCTCAATGTCTACGATCTCACGCCTTTTAATGGATACGCTTATTGGCTTGGCCTTGGAGTTTACCATTCTGGTGTACAAGTACACGGTGTGGAGTATGCATTCGGAGCTCATGAGTTTCCAACATCTGGAATTTTTGAAGGAGAACCGAAAAAGTGTGATGGTTTTACATTTAGGAAATCAATTTTGATCGGGAAGACGGATGTTGGGCCTTTAGAGGTGAGGGCAGTGTTGGAAGACCTTGCCGCGAATTACAGAGGCAATGCCTACAATTTGATCACCAAGAACTGCAACCACTTCTGCAATGATGCATGTATCACATTGACTGGAAATCCAATTCCAAGTTGGGTTAATCGGCTTGCCAGAATCGGGTTCCTCTGCAATTGTGTTCTTCCTGTGACTTTAAATACGACCAAAGTTCACAGAATCGAAGACAAGGCAGATGAAGGAGACAAGGACAGGTTAACAAACCAGTCAAACAATGCGGCATTATCTTCTAACTCTCCTTCATCTTCATCATCCTCTCCTTCTGGCACAACATTCCGCAGGGGTAGAAGCAGAACAAGACGCGCTCGTCCTCCCCCTTCGCCTTTGATTATTGCTTCTTCATCCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

230

Amino Acids

24.97

Weight (kDa)

8.1

Isoelectric Point (pI)

50.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C97 PF05903 23 - 157 1.2e-51 PPPDE putative peptidase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012076)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80690 AT1G80690
fragaria_vesca FvH4_6g28860
malus_domestica MD09G1223900.v1.1 MD17G1220800.v1.1
prunus_persica Prupe.3G096200_v2.0.a1
pyrus_communis pycom17g22540
rosa_chinensis RchiOBHm_Chr2g0133411
rosa_laevigata RLG00000019329
rosa_multiflora Rmu_sc0003874.1_g000005
rosa_roxburghii Rroxscaffold_2G00111190
rosa_rugosa Rorug02G0311500 Rorug02G0311600 Rorug02G0311700
rosa_samantha Rh2AG364000 Rh2BG369900 Rh2CG347300 Rh2DG386800
rosa_wichuraiana Rw2G029650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 645
AccB7I CCANNNNNTGG 1 cut(s) 200
AccI GTMKAC 2 cut(s) 72, 84
AccII CGCG 2 cut(s) 320, 642
AciI CCGC 3 cut(s) 318, 557, 616
AclWI GGATC 1 cut(s) 67
AcsI RAATTY 1 cut(s) 204
AdeI CACNNNGTG 1 cut(s) 163
AfaI GTAC 2 cut(s) 150, 156
AfiI CCNNNNNNNGG 3 cut(s) 104, 200, 441
AgsI TTSAA 1 cut(s) 212
AluBI AGCT 1 cut(s) 182
AluI AGCT 1 cut(s) 182
Alw21I GWGCWC 1 cut(s) 184
Alw26I GTCTC 1 cut(s) 516
AlwI GGATC 1 cut(s) 67
AlwNI CAGNNNCTG 1 cut(s) 68
AoxI GGCC 2 cut(s) 124, 281
ApoI RAATTY 1 cut(s) 204
AspLEI GCGC 1 cut(s) 644
AspS9I GGNCC 1 cut(s) 281
AsuHPI GGTGA 2 cut(s) 304, 343
BanII GRGCYC 1 cut(s) 184
BbsI GAAGAC 4 cut(s) 57, 275, 315, 510
Bbv12I GWGCWC 1 cut(s) 184
BccI CCATC 1 cut(s) 227
BciVI GTATCC 1 cut(s) 101
BclI TGATCA 1 cut(s) 348
BcoDI GTCTC 1 cut(s) 516
BfuI GTATCC 1 cut(s) 101
BisI GCNGC 2 cut(s) 318, 558
BlsI GCNGC 2 cut(s) 319, 559
BmgT120I GGNCC 1 cut(s) 281
BmiI GGNNCC 1 cut(s) 446
BmsI GCATC 1 cut(s) 370
BpiI GAAGAC 4 cut(s) 57, 275, 315, 510
BsaJI CCNNGG 1 cut(s) 127
Bsc4I CCNNNNNNNGG 3 cut(s) 104, 200, 441
Bse1I ACTGG 2 cut(s) 403, 544
Bse3DI GCAATG 2 cut(s) 340, 382
BseDI CCNNGG 1 cut(s) 127
BseGI GGATG 4 cut(s) 49, 280, 590, 680
BseLI CCNNNNNNNGG 3 cut(s) 104, 200, 441
BseMI GCAATG 2 cut(s) 340, 382
BseNI ACTGG 2 cut(s) 403, 544
BseRI GAGGAG 1 cut(s) 53
BsgI GTGCAG 1 cut(s) 43
Bsh1236I CGCG 2 cut(s) 320, 642
BshFI GGCC 2 cut(s) 126, 283
BsiHKAI GWGCWC 1 cut(s) 184
BslI CCNNNNNNNGG 3 cut(s) 104, 200, 441
BsmAI GTCTC 1 cut(s) 516
BsmI GAATGC 1 cut(s) 173
BsnI GGCC 2 cut(s) 126, 283
Bsp1286I GDGCHC 1 cut(s) 184
Bsp1407I TGTACA 1 cut(s) 148
Bsp143I GATC 4 cut(s) 59, 88, 261, 348
BspACI CCGC 3 cut(s) 318, 557, 616
BspANI GGCC 2 cut(s) 126, 283
BspFNI CGCG 2 cut(s) 320, 642
BspHI TCATGA 1 cut(s) 184
BspLI GGNNCC 1 cut(s) 446
BspPI GGATC 1 cut(s) 67
BsrDI GCAATG 2 cut(s) 340, 382
BsrGI TGTACA 1 cut(s) 148
BsrI ACTGG 2 cut(s) 403, 544
BssECI CCNNGG 1 cut(s) 127
BssMI GATC 4 cut(s) 59, 88, 261, 348
BssNAI GTATAC 1 cut(s) 73
BssT1I CCWWGG 1 cut(s) 127
Bst1107I GTATAC 1 cut(s) 73
Bst4CI ACNGT 2 cut(s) 56, 161
BstAUI TGTACA 1 cut(s) 148
BstC8I GCNNGC 1 cut(s) 432
BstF5I GGATG 4 cut(s) 49, 280, 590, 680
BstFNI CGCG 2 cut(s) 320, 642
BstHHI GCGC 1 cut(s) 644
BstKTI GATC 4 cut(s) 62, 91, 264, 351
BstMAI GTCTC 1 cut(s) 516
BstMBI GATC 4 cut(s) 59, 88, 261, 348
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstNSI RCATGY 1 cut(s) 387
BstUI CGCG 2 cut(s) 320, 642
BstV2I GAAGAC 4 cut(s) 57, 275, 315, 510
BstZ17I GTATAC 1 cut(s) 73
BsuI GTATCC 1 cut(s) 101
BsuRI GGCC 2 cut(s) 126, 283
BtsCI GGATG 4 cut(s) 49, 280, 590, 680
BtsI GCAGTG 1 cut(s) 306
BtsIMutI CAGTG 3 cut(s) 61, 69, 306
Cac8I GCNNGC 1 cut(s) 432
CaiI CAGNNNCTG 1 cut(s) 68
CciI TCATGA 1 cut(s) 184
CfoI GCGC 1 cut(s) 644
Cfr13I GGNCC 1 cut(s) 281
CseI GACGC 1 cut(s) 648
Csp6I GTAC 2 cut(s) 149, 155
CviAII CATG 2 cut(s) 185, 384
CviJI RGCY 5 cut(s) 121, 126, 182, 283, 430
CviKI_1 RGCY 5 cut(s) 121, 126, 182, 283, 430
CviQI GTAC 2 cut(s) 149, 155
DpnI GATC 4 cut(s) 61, 90, 263, 350
DpnII GATC 4 cut(s) 59, 88, 261, 348
DraI TTTAAA 1 cut(s) 477
DraIII CACNNNGTG 1 cut(s) 163
DrdI GACNNNNNNGTC 1 cut(s) 645
DseDI GACNNNNNNGTC 1 cut(s) 645
Ecl136II GAGCTC 1 cut(s) 182
Eco130I CCWWGG 1 cut(s) 127
Eco24I GRGCYC 1 cut(s) 184
Eco53kI GAGCTC 1 cut(s) 182
EcoICRI GAGCTC 1 cut(s) 182
EcoT14I CCWWGG 1 cut(s) 127
EcoT22I ATGCAT 2 cut(s) 175, 385
EcoT38I GRGCYC 1 cut(s) 184
ErhI CCWWGG 1 cut(s) 127
FaeI CATG 2 cut(s) 188, 387
FaiI YATR 4 cut(s) 73, 171, 186, 385
FatI CATG 2 cut(s) 184, 383
FbaI TGATCA 1 cut(s) 348
FblI GTMKAC 2 cut(s) 72, 84
Fnu4HI GCNGC 2 cut(s) 318, 558
FokI GGATG 4 cut(s) 56, 287, 577, 667
FriOI GRGCYC 1 cut(s) 184
Fsp4HI GCNGC 2 cut(s) 318, 558
GlaI GCGC 1 cut(s) 643
GluI GCNGC 2 cut(s) 318, 558
HaeIII GGCC 2 cut(s) 126, 283
HgaI GACGC 1 cut(s) 648
HhaI GCGC 1 cut(s) 644
Hin1II CATG 2 cut(s) 188, 387
Hin6I GCGC 1 cut(s) 642
HinP1I GCGC 1 cut(s) 642
HincII GTYRAC 1 cut(s) 537
HindII GTYRAC 1 cut(s) 537
HinfI GANTC 2 cut(s) 438, 498
HpaI GTTAAC 1 cut(s) 537
HphI GGTGA 2 cut(s) 304, 343
Hpy166II GTNNAC 7 cut(s) 73, 85, 136, 149, 157, 493, 537
Hpy188I TCNGA 1 cut(s) 179
Hpy188III TCNNGA 4 cut(s) 185, 201, 265, 687
Hpy8I GTNNAC 7 cut(s) 73, 85, 136, 149, 157, 493, 537
HpyAV CCTTC 5 cut(s) 206, 512, 588, 609, 666
HpyCH4III ACNGT 2 cut(s) 56, 161
HpyCH4V TGCA 6 cut(s) 24, 173, 363, 375, 383, 453
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
Hsp92II CATG 2 cut(s) 188, 387
HspAI GCGC 1 cut(s) 642
Ksp22I TGATCA 1 cut(s) 348
KspAI GTTAAC 1 cut(s) 537
Kzo9I GATC 4 cut(s) 59, 88, 261, 348
LmnI GCTCC 1 cut(s) 179
LweI GCATC 1 cut(s) 370
MaeIII GTNAC 1 cut(s) 469
MalI GATC 4 cut(s) 61, 90, 263, 350
MboI GATC 4 cut(s) 59, 88, 261, 348
MboII GAAGA 8 cut(s) 62, 280, 320, 455, 515, 558, 576, 669
MfeI CAATTG 1 cut(s) 454
MhlI GDGCHC 1 cut(s) 184
MluCI AATT 6 cut(s) 204, 255, 322, 343, 408, 454
MmeI TCCRAC 2 cut(s) 218, 285
Mph1103I ATGCAT 2 cut(s) 175, 385
MseI TTAA 4 cut(s) 102, 423, 476, 536
MslI CAYNNNNRTG 1 cut(s) 144
MunI CAATTG 1 cut(s) 454
Mva1269I GAATGC 1 cut(s) 173
MvnI CGCG 2 cut(s) 320, 642
MwoI GCNNNNNNNGC 1 cut(s) 179
NdeII GATC 4 cut(s) 59, 88, 261, 348
NlaIII CATG 2 cut(s) 188, 387
NlaIV GGNNCC 1 cut(s) 446
NmuCI GTSAC 1 cut(s) 469
NsiI ATGCAT 2 cut(s) 175, 385
NspI RCATGY 1 cut(s) 387
PagI TCATGA 1 cut(s) 184
PctI GAATGC 1 cut(s) 173
PfeI GAWTC 2 cut(s) 438, 498
PflMI CCANNNNNTGG 1 cut(s) 200
PkrI GCNGC 2 cut(s) 319, 559
Psp124BI GAGCTC 1 cut(s) 184
PspN4I GGNNCC 1 cut(s) 446
PspPI GGNCC 1 cut(s) 281
PstNI CAGNNNCTG 1 cut(s) 68
RsaI GTAC 2 cut(s) 150, 156
RsaNI GTAC 2 cut(s) 149, 155
RseI CAYNNNNRTG 1 cut(s) 144
SacI GAGCTC 1 cut(s) 184
SaqAI TTAA 4 cut(s) 102, 423, 476, 536
SatI GCNGC 2 cut(s) 318, 558
Sau3AI GATC 4 cut(s) 59, 88, 261, 348
Sau96I GGNCC 1 cut(s) 281
SduI GDGCHC 1 cut(s) 184
SetI ASST 5 cut(s) 78, 184, 294, 315, 536
SfaNI GCATC 1 cut(s) 370
SmiMI CAYNNNNRTG 1 cut(s) 144
Sse9I AATT 6 cut(s) 204, 255, 322, 343, 408, 454
SsiI CCGC 3 cut(s) 318, 557, 616
SstI GAGCTC 1 cut(s) 184
StyI CCWWGG 1 cut(s) 127
TaaI ACNGT 2 cut(s) 56, 161
TaqI TCGA 1 cut(s) 501
TasI AATT 6 cut(s) 204, 255, 322, 343, 408, 454
TatI WGTACW 2 cut(s) 148, 154
TauI GCSGC 2 cut(s) 320, 560
TfiI GAWTC 2 cut(s) 438, 498
Tru1I TTAA 4 cut(s) 102, 423, 476, 536
Tru9I TTAA 4 cut(s) 102, 423, 476, 536
TscAI CASTG 3 cut(s) 61, 69, 306
TseFI GTSAC 1 cut(s) 469
Tsp45I GTSAC 1 cut(s) 469
TspDTI ATGAA 4 cut(s) 531, 570, 576, 669
TspGWI ACGGA 1 cut(s) 287
TspRI CASTG 3 cut(s) 61, 69, 306
Van91I CCANNNNNTGG 1 cut(s) 200
XapI RAATTY 1 cut(s) 204
XceI RCATGY 1 cut(s) 387
XcmI CCANNNNNNNNNTGG 1 cut(s) 414
XmiI GTMKAC 2 cut(s) 72, 84
Zsp2I ATGCAT 2 cut(s) 175, 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.