Prupe.3G096200_v2.0.a1

deSI-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0012076
Physical Location & Seq
Reverse (-)
7256218 .. 7258448
2231 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G096200.1

Sequence Viewer

Length: 675 bp
ATGTTGTGCAGAAAGAGTGTCTGCACTGAGGACAGTGGATCGGTGTCTGTGTACCTCAACGTCTACGATCTGACACCTTTCAATGGCTACGCTTATTGGCTTGGCCTTGGAGTTTACCACTCTGGTGTACAGGTTCACGGTGTTGAATATGCATTTGGAGCTCATGAGTATCCAACAACTGGAATATTTGAAGGAGAACCAAAAAAGTGTGATGGGTTTACATTTAGAAAATCAATTCTGATTGGGAAAACGGATGTTGGACCTTTAGAGGTGAGGGCAGTGATGGAAGAGCTTGCAGAGCAATACAAAGGAAATGCCTACAATTTGATCACTAAAAACTGCAACCATTTCTGCAATGATGCATGTGTTAGATTGACTGGAAATTCAATTCCAAGTTGGGTTAATCGTCTTGCCCGAATTGGCTTCCTCTGCAATTGTGTTCTTCCTGTGACTATAAATTCAACAAAAGTTCGACATCATCGAATCGAAGATAAGGCAGATGAAGGAGACAAGAAGAAATTAACAAGCCAGTCAAACAATTTGGCAACGTCTTCTAATTCTTCTTCATCTCCATCATCCTCTCCTTCTGGCACAACAACCCGGAGGGGAAGAAGCAGAACAAGACGCGCTCGTCCTCCATCTTCGCCTTTGATGATTGGTTCTTCATCCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

225

Amino Acids

24.54

Weight (kDa)

9.12

Isoelectric Point (pI)

50.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012076)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80690 AT1G80690
fragaria_vesca FvH4_6g28860
malus_domestica MD09G1223900.v1.1 MD17G1220800.v1.1
prunus_persica Prupe.3G096200_v2.0.a1
pyrus_communis pycom17g22540
rosa_chinensis RchiOBHm_Chr2g0133411
rosa_laevigata RLG00000019329
rosa_multiflora Rmu_sc0003874.1_g000005
rosa_roxburghii Rroxscaffold_2G00111190
rosa_rugosa Rorug02G0311500 Rorug02G0311600 Rorug02G0311700
rosa_samantha Rh2AG364000 Rh2BG369900 Rh2CG347300 Rh2DG386800
rosa_wichuraiana Rw2G029650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 630
AccB7I CCANNNNNTGG 1 cut(s) 179
AccI GTMKAC 1 cut(s) 63
AccII CGCG 1 cut(s) 627
AclWI GGATC 1 cut(s) 46
AcsI RAATTY 2 cut(s) 382, 457
AfaI GTAC 2 cut(s) 53, 129
AfiI CCNNNNNNNGG 2 cut(s) 83, 179
AgsI TTSAA 5 cut(s) 82, 146, 191, 387, 462
AjuI GAANNNNNNNTTGG 2 cut(s) 138, 170
AleI CACNNNNGTG 1 cut(s) 123
AluBI AGCT 2 cut(s) 161, 292
AluI AGCT 2 cut(s) 161, 292
Alw21I GWGCWC 1 cut(s) 163
Alw26I GTCTC 1 cut(s) 501
AlwI GGATC 1 cut(s) 46
AoxI GGCC 1 cut(s) 103
ApoI RAATTY 2 cut(s) 382, 457
AspLEI GCGC 1 cut(s) 629
AspS9I GGNCC 1 cut(s) 260
AsuC2I CCSGG 1 cut(s) 601
AsuHPI GGTGA 1 cut(s) 283
AvaII GGWCC 1 cut(s) 260
BanII GRGCYC 1 cut(s) 163
BbsI GAAGAC 1 cut(s) 543
Bbv12I GWGCWC 1 cut(s) 163
BccI CCATC 4 cut(s) 206, 277, 580, 646
BciVI GTATCC 1 cut(s) 180
BclI TGATCA 1 cut(s) 327
BcnI CCSGG 1 cut(s) 601
BcoDI GTCTC 1 cut(s) 501
BfuI GTATCC 1 cut(s) 180
Bme1390I CCNGG 1 cut(s) 601
Bme18I GGWCC 1 cut(s) 260
BmgT120I GGNCC 1 cut(s) 260
BmrFI CCNGG 1 cut(s) 601
BmsI GCATC 1 cut(s) 349
BpiI GAAGAC 1 cut(s) 543
BpuMI CCSGG 1 cut(s) 601
BsaJI CCNNGG 1 cut(s) 106
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 179
Bse1I ACTGG 3 cut(s) 184, 382, 529
Bse3DI GCAATG 1 cut(s) 361
BseDI CCNNGG 1 cut(s) 106
BseGI GGATG 3 cut(s) 259, 575, 665
BseLI CCNNNNNNNGG 2 cut(s) 83, 179
BseMI GCAATG 1 cut(s) 361
BseMII CTCAG 1 cut(s) 18
BseNI ACTGG 3 cut(s) 184, 382, 529
BsgI GTGCAG 2 cut(s) 7, 28
Bsh1236I CGCG 1 cut(s) 627
BshFI GGCC 1 cut(s) 105
BsiHKAI GWGCWC 1 cut(s) 163
BsiSI CCGG 1 cut(s) 601
BslI CCNNNNNNNGG 2 cut(s) 83, 179
BsmAI GTCTC 1 cut(s) 501
BsnI GGCC 1 cut(s) 105
Bsp1286I GDGCHC 1 cut(s) 163
Bsp1407I TGTACA 1 cut(s) 127
Bsp143I GATC 3 cut(s) 38, 67, 327
BspANI GGCC 1 cut(s) 105
BspCNI CTCAG 1 cut(s) 19
BspFNI CGCG 1 cut(s) 627
BspHI TCATGA 1 cut(s) 163
BspPI GGATC 1 cut(s) 46
BspQI GCTCTTC 1 cut(s) 282
BsrDI GCAATG 1 cut(s) 361
BsrGI TGTACA 1 cut(s) 127
BsrI ACTGG 3 cut(s) 184, 382, 529
BssECI CCNNGG 1 cut(s) 106
BssMI GATC 3 cut(s) 38, 67, 327
BssT1I CCWWGG 1 cut(s) 106
Bst4CI ACNGT 2 cut(s) 35, 140
Bst6I CTCTTC 1 cut(s) 282
BstAUI TGTACA 1 cut(s) 127
BstC8I GCNNGC 1 cut(s) 294
BstDEI CTNAG 1 cut(s) 27
BstF5I GGATG 3 cut(s) 259, 575, 665
BstFNI CGCG 1 cut(s) 627
BstHHI GCGC 1 cut(s) 629
BstKTI GATC 3 cut(s) 41, 70, 330
BstMAI GTCTC 1 cut(s) 501
BstMBI GATC 3 cut(s) 38, 67, 327
BstMWI GCNNNNNNNGC 3 cut(s) 158, 298, 429
BstNSI RCATGY 1 cut(s) 366
BstSCI CCNGG 1 cut(s) 599
BstUI CGCG 1 cut(s) 627
BstV2I GAAGAC 1 cut(s) 543
BsuI GTATCC 1 cut(s) 180
BsuRI GGCC 1 cut(s) 105
BtsCI GGATG 3 cut(s) 259, 575, 665
BtsI GCAGTG 1 cut(s) 285
BtsIMutI CAGTG 3 cut(s) 24, 40, 285
Cac8I GCNNGC 1 cut(s) 294
CciI TCATGA 1 cut(s) 163
CfoI GCGC 1 cut(s) 629
Cfr13I GGNCC 1 cut(s) 260
CseI GACGC 1 cut(s) 633
Csp6I GTAC 2 cut(s) 52, 128
CviAII CATG 2 cut(s) 164, 363
CviJI RGCY 7 cut(s) 87, 100, 105, 161, 292, 423, 528
CviKI_1 RGCY 7 cut(s) 87, 100, 105, 161, 292, 423, 528
CviQI GTAC 2 cut(s) 52, 128
DdeI CTNAG 1 cut(s) 27
DpnI GATC 3 cut(s) 40, 69, 329
DpnII GATC 3 cut(s) 38, 67, 327
DrdI GACNNNNNNGTC 1 cut(s) 630
DseDI GACNNNNNNGTC 1 cut(s) 630
Eam1104I CTCTTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 282
Ecl136II GAGCTC 1 cut(s) 161
Eco130I CCWWGG 1 cut(s) 106
Eco24I GRGCYC 1 cut(s) 163
Eco47I GGWCC 1 cut(s) 260
Eco53kI GAGCTC 1 cut(s) 161
EcoICRI GAGCTC 1 cut(s) 161
EcoT14I CCWWGG 1 cut(s) 106
EcoT22I ATGCAT 2 cut(s) 154, 364
EcoT38I GRGCYC 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 106
FaeI CATG 2 cut(s) 167, 366
FaiI YATR 4 cut(s) 150, 165, 364, 455
FatI CATG 2 cut(s) 163, 362
FbaI TGATCA 1 cut(s) 327
FblI GTMKAC 1 cut(s) 63
FokI GGATG 3 cut(s) 266, 562, 652
FriOI GRGCYC 1 cut(s) 163
GlaI GCGC 1 cut(s) 628
HaeIII GGCC 1 cut(s) 105
HapII CCGG 1 cut(s) 601
HgaI GACGC 1 cut(s) 633
HhaI GCGC 1 cut(s) 629
Hin1II CATG 2 cut(s) 167, 366
Hin6I GCGC 1 cut(s) 627
HinP1I GCGC 1 cut(s) 627
HinfI GANTC 1 cut(s) 483
HpaII CCGG 1 cut(s) 601
HphI GGTGA 1 cut(s) 283
Hpy166II GTNNAC 6 cut(s) 52, 64, 115, 128, 136, 219
Hpy188I TCNGA 2 cut(s) 72, 240
Hpy188III TCNNGA 2 cut(s) 164, 672
Hpy8I GTNNAC 6 cut(s) 52, 64, 115, 128, 136, 219
HpyAV CCTTC 3 cut(s) 185, 497, 594
HpyCH4III ACNGT 2 cut(s) 35, 140
HpyCH4IV ACGT 2 cut(s) 60, 548
HpyCH4V TGCA 8 cut(s) 9, 24, 152, 296, 342, 354, 362, 432
HpyF10VI GCNNNNNNNGC 3 cut(s) 158, 298, 429
HpyF3I CTNAG 1 cut(s) 27
HpySE526I ACGT 2 cut(s) 60, 548
Hsp92II CATG 2 cut(s) 167, 366
HspAI GCGC 1 cut(s) 627
Ksp22I TGATCA 1 cut(s) 327
Kzo9I GATC 3 cut(s) 38, 67, 327
LguI GCTCTTC 1 cut(s) 282
LmnI GCTCC 1 cut(s) 158
LpnPI CCDG 8 cut(s) 108, 116, 165, 363, 459, 542, 573, 614
LweI GCATC 1 cut(s) 349
MaeII ACGT 2 cut(s) 60, 548
MaeIII GTNAC 1 cut(s) 448
MalI GATC 3 cut(s) 40, 69, 329
MboI GATC 3 cut(s) 38, 67, 327
MfeI CAATTG 1 cut(s) 433
MhlI GDGCHC 1 cut(s) 163
MmeI TCCRAC 2 cut(s) 197, 238
MnlI CCTC 8 cut(s) 22, 65, 262, 267, 437, 589, 597, 645
Mph1103I ATGCAT 2 cut(s) 154, 364
MseI TTAA 2 cut(s) 402, 521
MslI CAYNNNNRTG 1 cut(s) 123
MspI CCGG 1 cut(s) 601
MspR9I CCNGG 1 cut(s) 601
MunI CAATTG 1 cut(s) 433
MvnI CGCG 1 cut(s) 627
MwoI GCNNNNNNNGC 3 cut(s) 158, 298, 429
NciI CCSGG 1 cut(s) 601
NdeII GATC 3 cut(s) 38, 67, 327
NlaIII CATG 2 cut(s) 167, 366
NmuCI GTSAC 1 cut(s) 448
NsiI ATGCAT 2 cut(s) 154, 364
NspI RCATGY 1 cut(s) 366
OliI CACNNNNGTG 1 cut(s) 123
PagI TCATGA 1 cut(s) 163
PciSI GCTCTTC 1 cut(s) 282
PcsI WCGNNNNNNNCGW 2 cut(s) 412, 478
PfeI GAWTC 1 cut(s) 483
PflMI CCANNNNNTGG 1 cut(s) 179
Psp124BI GAGCTC 1 cut(s) 163
PspPI GGNCC 1 cut(s) 260
RsaI GTAC 2 cut(s) 53, 129
RsaNI GTAC 2 cut(s) 52, 128
RseI CAYNNNNRTG 1 cut(s) 123
SacI GAGCTC 1 cut(s) 163
SapI GCTCTTC 1 cut(s) 282
SaqAI TTAA 2 cut(s) 402, 521
Sau3AI GATC 3 cut(s) 38, 67, 327
Sau96I GGNCC 1 cut(s) 260
ScrFI CCNGG 1 cut(s) 601
SduI GDGCHC 1 cut(s) 163
SetI ASST 9 cut(s) 57, 63, 79, 135, 163, 265, 273, 294, 551
SfaNI GCATC 1 cut(s) 349
SinI GGWCC 1 cut(s) 260
SmiMI CAYNNNNRTG 1 cut(s) 123
SspI AATATT 1 cut(s) 186
SstI GAGCTC 1 cut(s) 163
StyD4I CCNGG 1 cut(s) 599
StyI CCWWGG 1 cut(s) 106
TaaI ACNGT 2 cut(s) 35, 140
TaiI ACGT 2 cut(s) 63, 551
TaqI TCGA 3 cut(s) 472, 481, 486
TatI WGTACW 1 cut(s) 127
TfiI GAWTC 1 cut(s) 483
Tru1I TTAA 2 cut(s) 402, 521
Tru9I TTAA 2 cut(s) 402, 521
TscAI CASTG 3 cut(s) 31, 40, 285
TseFI GTSAC 1 cut(s) 448
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 3 cut(s) 516, 555, 654
TspGWI ACGGA 1 cut(s) 266
TspRI CASTG 3 cut(s) 31, 40, 285
Van91I CCANNNNNTGG 1 cut(s) 179
VpaK11BI GGWCC 1 cut(s) 260
XapI RAATTY 2 cut(s) 382, 457
XceI RCATGY 1 cut(s) 366
XmiI GTMKAC 1 cut(s) 63
Zsp2I ATGCAT 2 cut(s) 154, 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.