Rroxscaffold_2G00111190

deSI-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0012076
Physical Location & Seq
Reverse (-)
35779385 .. 35781616
2232 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00111190.1

Sequence Viewer

Length: 696 bp
ATGCTGTGTGGAAAGAGTGTCTGCACTGATGACAGTGGATCCGTGCCTGTGTACTTGAACGTTTATGATCTGACACCTTATAATGGCTACGCTTATTGGCTTGGTCTTGGAGTCTACCATTCTGGTGTACAAGATGTGCTGAAATCTATACGAGATGTCCATGGGATTGAGTATGCATTTGGAGCTCATGAGTATCCAACAACTGGGATTTTTGAAGGGGAACCAAAAAAGTGTGATGGATTTACATTTAGGAAAGCAATTTTGATTGGGAAAACGGATGTTGGGCCTTTAGAGGTGAGAACGGTGATGGAACAGCTCGCTGAGCAATATAGAGGGAATGCATACAACTTGATCACCAAAAACTGCAACCATTTCTGCAATGATGCTTGTATGAGATTGACTGGGAACCCAATTCCAAATTGGGTTAATCGGCTTGCAAGAATCGGCTTCCTCTGCAATTGTGTTCTTCCTGTAACTTTAAATTCAACAAAAGTTCGTCATCACAGAATAGACGATAAGGCATATGAAGGAGACGAGAAGAAACTAACAAGCCAAGCAAACAATGTGGCAATACCTTCTACTTCTTCTTCATCTTCATCATCCTCTCCATCCGGCCCAACAACCCGCAGGGGTAGAAGCCGAACAAGACGTGCTCTTCCTCCATCGTCACCTTTGGTTGTTGGTTCTTCATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

231

Amino Acids

25.33

Weight (kDa)

8.88

Isoelectric Point (pI)

42.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C97 PF05903 16 - 158 1.4e-49 PPPDE putative peptidase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012076)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80690 AT1G80690
fragaria_vesca FvH4_6g28860
malus_domestica MD09G1223900.v1.1 MD17G1220800.v1.1
prunus_persica Prupe.3G096200_v2.0.a1
pyrus_communis pycom17g22540
rosa_chinensis RchiOBHm_Chr2g0133411
rosa_laevigata RLG00000019329
rosa_multiflora Rmu_sc0003874.1_g000005
rosa_roxburghii Rroxscaffold_2G00111190
rosa_rugosa Rorug02G0311500 Rorug02G0311600 Rorug02G0311700
rosa_samantha Rh2AG364000 Rh2BG369900 Rh2CG347300 Rh2DG386800
rosa_wichuraiana Rw2G029650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 81
AccB7I CCANNNNNTGG 1 cut(s) 203
AccI GTMKAC 1 cut(s) 114
AciI CCGC 1 cut(s) 625
AclI AACGTT 1 cut(s) 60
AclWI GGATC 2 cut(s) 33, 46
AcsI RAATTY 1 cut(s) 481
AfaI GTAC 2 cut(s) 53, 129
AfiI CCNNNNNNNGG 2 cut(s) 83, 203
AgsI TTSAA 3 cut(s) 58, 215, 486
AjiI CACGTC 1 cut(s) 650
AluBI AGCT 2 cut(s) 185, 316
AluI AGCT 2 cut(s) 185, 316
Alw21I GWGCWC 2 cut(s) 187, 655
Alw26I GTCTC 1 cut(s) 525
AlwI GGATC 2 cut(s) 33, 46
AoxI GGCC 2 cut(s) 284, 613
ApoI RAATTY 1 cut(s) 481
AspS9I GGNCC 2 cut(s) 284, 614
AsuHPI GGTGA 4 cut(s) 307, 316, 346, 660
BamHI GGATCC 1 cut(s) 38
BanII GRGCYC 1 cut(s) 187
Bbv12I GWGCWC 2 cut(s) 187, 655
BccI CCATC 4 cut(s) 230, 301, 616, 670
BciVI GTATCC 1 cut(s) 204
BclI TGATCA 1 cut(s) 351
BcoDI GTCTC 1 cut(s) 525
BfuI GTATCC 1 cut(s) 204
BlpI GCTNAGC 1 cut(s) 321
BmgBI CACGTC 1 cut(s) 650
BmgT120I GGNCC 2 cut(s) 284, 614
BmiI GGNNCC 3 cut(s) 40, 222, 407
BmrI ACTGGG 2 cut(s) 213, 411
BmsI GCATC 1 cut(s) 373
BmuI ACTGGG 2 cut(s) 213, 411
Bpu1102I GCTNAGC 1 cut(s) 321
BsaJI CCNNGG 1 cut(s) 160
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 203
Bse1I ACTGG 2 cut(s) 208, 406
Bse3DI GCAATG 1 cut(s) 385
BseDI CCNNGG 1 cut(s) 160
BseGI GGATG 4 cut(s) 283, 599, 608, 689
BseLI CCNNNNNNNGG 2 cut(s) 83, 203
BseMI GCAATG 1 cut(s) 385
BseMII CTCAG 1 cut(s) 312
BseNI ACTGG 2 cut(s) 208, 406
BsgI GTGCAG 1 cut(s) 7
BshFI GGCC 2 cut(s) 286, 615
BsiHKAI GWGCWC 2 cut(s) 187, 655
BsiSI CCGG 1 cut(s) 612
BslI CCNNNNNNNGG 2 cut(s) 83, 203
BsmAI GTCTC 1 cut(s) 525
BsmBI CGTCTC 1 cut(s) 525
BsmI GAATGC 1 cut(s) 343
BsnI GGCC 2 cut(s) 286, 615
Bsp1286I GDGCHC 2 cut(s) 187, 655
Bsp1407I TGTACA 1 cut(s) 127
Bsp143I GATC 3 cut(s) 38, 67, 351
Bsp1720I GCTNAGC 1 cut(s) 321
Bsp19I CCATGG 1 cut(s) 160
BspACI CCGC 1 cut(s) 625
BspANI GGCC 2 cut(s) 286, 615
BspCNI CTCAG 1 cut(s) 313
BspHI TCATGA 1 cut(s) 187
BspLI GGNNCC 3 cut(s) 40, 222, 407
BspPI GGATC 2 cut(s) 33, 46
BspQI GCTCTTC 1 cut(s) 660
BsrDI GCAATG 1 cut(s) 385
BsrGI TGTACA 1 cut(s) 127
BsrI ACTGG 2 cut(s) 208, 406
BssECI CCNNGG 1 cut(s) 160
BssMI GATC 3 cut(s) 38, 67, 351
BssT1I CCWWGG 1 cut(s) 160
Bst4CI ACNGT 2 cut(s) 35, 304
Bst6I CTCTTC 1 cut(s) 660
BstAUI TGTACA 1 cut(s) 127
BstC8I GCNNGC 2 cut(s) 318, 435
BstDEI CTNAG 1 cut(s) 321
BstDSI CCRYGG 1 cut(s) 160
BstF5I GGATG 4 cut(s) 283, 599, 608, 689
BstKTI GATC 3 cut(s) 41, 70, 354
BstMAI GTCTC 1 cut(s) 525
BstMBI GATC 3 cut(s) 38, 67, 351
BstMWI GCNNNNNNNGC 3 cut(s) 182, 322, 453
BstX2I RGATCY 1 cut(s) 38
BstYI RGATCY 1 cut(s) 38
BsuI GTATCC 1 cut(s) 204
BsuRI GGCC 2 cut(s) 286, 615
BtgI CCRYGG 1 cut(s) 160
BtrI CACGTC 1 cut(s) 650
BtsCI GGATG 4 cut(s) 283, 599, 608, 689
BtsIMutI CAGTG 2 cut(s) 24, 40
Cac8I GCNNGC 2 cut(s) 318, 435
CciI TCATGA 1 cut(s) 187
Cfr13I GGNCC 2 cut(s) 284, 614
Csp6I GTAC 2 cut(s) 52, 128
CspCI CAANNNNNGTGG 2 cut(s) 546, 581
CviAII CATG 2 cut(s) 161, 188
CviQI GTAC 2 cut(s) 52, 128
DdeI CTNAG 1 cut(s) 321
DpnI GATC 3 cut(s) 40, 69, 353
DpnII GATC 3 cut(s) 38, 67, 351
DraI TTTAAA 1 cut(s) 480
Eam1104I CTCTTC 1 cut(s) 660
EarI CTCTTC 1 cut(s) 660
Ecl136II GAGCTC 1 cut(s) 185
Eco130I CCWWGG 1 cut(s) 160
Eco24I GRGCYC 1 cut(s) 187
Eco53kI GAGCTC 1 cut(s) 185
EcoICRI GAGCTC 1 cut(s) 185
EcoT14I CCWWGG 1 cut(s) 160
EcoT22I ATGCAT 2 cut(s) 178, 343
EcoT38I GRGCYC 1 cut(s) 187
ErhI CCWWGG 1 cut(s) 160
Esp3I CGTCTC 1 cut(s) 525
FaeI CATG 2 cut(s) 164, 191
FatI CATG 2 cut(s) 160, 187
FauI CCCGC 1 cut(s) 632
FauNDI CATATG 1 cut(s) 523
FbaI TGATCA 1 cut(s) 351
FblI GTMKAC 1 cut(s) 114
FokI GGATG 4 cut(s) 290, 586, 595, 676
FriOI GRGCYC 1 cut(s) 187
HaeIII GGCC 2 cut(s) 286, 615
HapII CCGG 1 cut(s) 612
Hin1II CATG 2 cut(s) 164, 191
HinfI GANTC 2 cut(s) 111, 441
HpaII CCGG 1 cut(s) 612
HphI GGTGA 4 cut(s) 307, 316, 346, 660
Hpy166II GTNNAC 3 cut(s) 52, 115, 128
Hpy188I TCNGA 1 cut(s) 72
Hpy188III TCNNGA 2 cut(s) 188, 693
Hpy8I GTNNAC 3 cut(s) 52, 115, 128
HpyAV CCTTC 3 cut(s) 209, 521, 585
HpyCH4III ACNGT 2 cut(s) 35, 304
HpyCH4IV ACGT 2 cut(s) 60, 649
HpyCH4V TGCA 7 cut(s) 24, 176, 341, 366, 378, 437, 456
HpyF10VI GCNNNNNNNGC 3 cut(s) 182, 322, 453
HpyF3I CTNAG 1 cut(s) 321
HpySE526I ACGT 2 cut(s) 60, 649
Hsp92II CATG 2 cut(s) 164, 191
Ksp22I TGATCA 1 cut(s) 351
Kzo9I GATC 3 cut(s) 38, 67, 351
LguI GCTCTTC 1 cut(s) 660
LmnI GCTCC 1 cut(s) 182
LpnPI CCDG 7 cut(s) 60, 108, 189, 387, 483, 613, 625
LweI GCATC 1 cut(s) 373
MaeII ACGT 2 cut(s) 60, 649
MaeIII GTNAC 2 cut(s) 472, 666
MalI GATC 3 cut(s) 40, 69, 353
MboI GATC 3 cut(s) 38, 67, 351
MboII GAAGA 7 cut(s) 458, 550, 576, 579, 585, 647, 678
MfeI CAATTG 1 cut(s) 457
MflI RGATCY 1 cut(s) 38
MhlI GDGCHC 2 cut(s) 187, 655
MluCI AATT 5 cut(s) 258, 411, 418, 457, 481
MlyI GAGTC 1 cut(s) 120
MmeI TCCRAC 1 cut(s) 221
MnlI CCTC 5 cut(s) 286, 326, 461, 613, 669
Mph1103I ATGCAT 2 cut(s) 178, 343
MseI TTAA 2 cut(s) 426, 479
MslI CAYNNNNRTG 1 cut(s) 123
MspI CCGG 1 cut(s) 612
MunI CAATTG 1 cut(s) 457
Mva1269I GAATGC 1 cut(s) 343
MwoI GCNNNNNNNGC 3 cut(s) 182, 322, 453
NcoI CCATGG 1 cut(s) 160
NdeI CATATG 1 cut(s) 523
NdeII GATC 3 cut(s) 38, 67, 351
NlaIII CATG 2 cut(s) 164, 191
NlaIV GGNNCC 3 cut(s) 40, 222, 407
NmuCI GTSAC 1 cut(s) 666
NsiI ATGCAT 2 cut(s) 178, 343
PagI TCATGA 1 cut(s) 187
PciSI GCTCTTC 1 cut(s) 660
PctI GAATGC 1 cut(s) 343
PfeI GAWTC 1 cut(s) 441
PflMI CCANNNNNTGG 1 cut(s) 203
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
PsiI TTATAA 1 cut(s) 81
Psp124BI GAGCTC 1 cut(s) 187
Psp1406I AACGTT 1 cut(s) 60
PspN4I GGNNCC 3 cut(s) 40, 222, 407
PspPI GGNCC 2 cut(s) 284, 614
PsuI RGATCY 1 cut(s) 38
RsaI GTAC 2 cut(s) 53, 129
RsaNI GTAC 2 cut(s) 52, 128
RseI CAYNNNNRTG 1 cut(s) 123
SacI GAGCTC 1 cut(s) 187
SapI GCTCTTC 1 cut(s) 660
SaqAI TTAA 2 cut(s) 426, 479
Sau3AI GATC 3 cut(s) 38, 67, 351
Sau96I GGNCC 2 cut(s) 284, 614
SchI GAGTC 1 cut(s) 120
SduI GDGCHC 2 cut(s) 187, 655
SetI ASST 8 cut(s) 63, 79, 187, 297, 318, 577, 652, 673
SfaNI GCATC 1 cut(s) 373
SmiMI CAYNNNNRTG 1 cut(s) 123
Sse9I AATT 5 cut(s) 258, 411, 418, 457, 481
SsiI CCGC 1 cut(s) 625
SstI GAGCTC 1 cut(s) 187
StyI CCWWGG 1 cut(s) 160
TaaI ACNGT 2 cut(s) 35, 304
TaiI ACGT 2 cut(s) 63, 652
TasI AATT 5 cut(s) 258, 411, 418, 457, 481
TatI WGTACW 2 cut(s) 51, 127
TfiI GAWTC 1 cut(s) 441
Tru1I TTAA 2 cut(s) 426, 479
Tru9I TTAA 2 cut(s) 426, 479
TscAI CASTG 2 cut(s) 31, 40
TseFI GTSAC 1 cut(s) 666
Tsp45I GTSAC 1 cut(s) 666
TspDTI ATGAA 4 cut(s) 540, 579, 585, 678
TspGWI ACGGA 2 cut(s) 31, 290
TspRI CASTG 2 cut(s) 31, 40
Van91I CCANNNNNTGG 1 cut(s) 203
XapI RAATTY 1 cut(s) 481
XcmI CCANNNNNNNNNTGG 1 cut(s) 417
XmiI GTMKAC 1 cut(s) 114
Zsp2I ATGCAT 2 cut(s) 178, 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.