RLG00000019329

deSI-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0012076
Physical Location & Seq
Forward (+)
50356667 .. 50358152
1486 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019329

Sequence Viewer

Length: 672 bp
ATGCTGTGTGGAAAGAGTGTCTGCACTGATGACAGTGGATCCGTGCCTGTGTACTTGAACGTTTATGATCTGACACCTTATAATGGCTACGCTTATTGGCTGGGTCTTGGAGTCTACCATTCTGGTGTACAAGTCCATGGGATTGAGTATGCATTTGGAGCTCATGAGTATCCAACAACTGGGATTTTTGAAGGGGAACCAAAAAAGTGTGAAGGATTTACATTTAGGAAAGCAATTTTGATTGGGAAAACGGATGTTGGGCCTTTAGAGGTGAGAACGGTGATGGAACAGCTTGCTGAGCAATATAGAGGGAATGCATACAACTTGATCACCAAAAACTGCAACCATTTCTGCAATGATGCTTGTATGAGATTGACTGGGAACCCAATTCCAAATTGGGTTAATCGGCTTGCAAGAATCGGCTTCCTCTGCAATTGTGTTCTTCCTGTAACTTTAAATTCAACAAAAGTTCGTCATCACAGAATAGACGATAAGGCATATGAAGGAGACGAGAAGAAACTAACAAGCCAAGCAAACAATGTGGCAATACCTTCTACTTCTTCTTCATCTTCATCATCCTCTCCATCCGGCCCAACAACCCGCAGGGGTAGAAGCCGAACAAGACGTGCTCAGCCTCCATCGTCGCCTTTGATTGTTGGTTCTTCAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

224

Amino Acids

24.43

Weight (kDa)

8.89

Isoelectric Point (pI)

40.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C97 PF05903 16 - 150 3.2e-52 PPPDE putative peptidase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012076)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80690 AT1G80690
fragaria_vesca FvH4_6g28860
malus_domestica MD09G1223900.v1.1 MD17G1220800.v1.1
prunus_persica Prupe.3G096200_v2.0.a1
pyrus_communis pycom17g22540
rosa_chinensis RchiOBHm_Chr2g0133411
rosa_laevigata RLG00000019329
rosa_multiflora Rmu_sc0003874.1_g000005
rosa_roxburghii Rroxscaffold_2G00111190
rosa_rugosa Rorug02G0311500 Rorug02G0311600 Rorug02G0311700
rosa_samantha Rh2AG364000 Rh2BG369900 Rh2CG347300 Rh2DG386800
rosa_wichuraiana Rw2G029650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 81
AccB7I CCANNNNNTGG 1 cut(s) 179
AccI GTMKAC 1 cut(s) 114
AciI CCGC 1 cut(s) 601
AclI AACGTT 1 cut(s) 60
AclWI GGATC 2 cut(s) 33, 46
AcsI RAATTY 1 cut(s) 457
AcuI CTGAAG 1 cut(s) 648
AfaI GTAC 2 cut(s) 53, 129
AfiI CCNNNNNNNGG 2 cut(s) 83, 179
AgsI TTSAA 3 cut(s) 58, 191, 462
AjiI CACGTC 1 cut(s) 626
AluBI AGCT 2 cut(s) 161, 292
AluI AGCT 2 cut(s) 161, 292
Alw21I GWGCWC 2 cut(s) 163, 631
Alw26I GTCTC 1 cut(s) 501
AlwI GGATC 2 cut(s) 33, 46
AoxI GGCC 2 cut(s) 260, 589
ApoI RAATTY 1 cut(s) 457
AspS9I GGNCC 2 cut(s) 260, 590
AsuHPI GGTGA 3 cut(s) 283, 292, 322
BamHI GGATCC 1 cut(s) 38
BanII GRGCYC 1 cut(s) 163
Bbv12I GWGCWC 2 cut(s) 163, 631
BccI CCATC 3 cut(s) 277, 592, 646
BciVI GTATCC 1 cut(s) 180
BclI TGATCA 1 cut(s) 327
BcoDI GTCTC 1 cut(s) 501
BfuI GTATCC 1 cut(s) 180
BlpI GCTNAGC 2 cut(s) 297, 630
BmgBI CACGTC 1 cut(s) 626
BmgT120I GGNCC 2 cut(s) 260, 590
BmiI GGNNCC 3 cut(s) 40, 198, 383
BmrI ACTGGG 2 cut(s) 189, 387
BmsI GCATC 1 cut(s) 349
BmuI ACTGGG 2 cut(s) 189, 387
Bpu1102I GCTNAGC 2 cut(s) 297, 630
BsaJI CCNNGG 1 cut(s) 136
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 179
Bse1I ACTGG 2 cut(s) 184, 382
Bse3DI GCAATG 1 cut(s) 361
BseDI CCNNGG 1 cut(s) 136
BseGI GGATG 3 cut(s) 259, 575, 584
BseLI CCNNNNNNNGG 2 cut(s) 83, 179
BseMI GCAATG 1 cut(s) 361
BseMII CTCAG 2 cut(s) 288, 644
BseNI ACTGG 2 cut(s) 184, 382
BseYI CCCAGC 1 cut(s) 100
BsgI GTGCAG 1 cut(s) 7
BshFI GGCC 2 cut(s) 262, 591
BsiHKAI GWGCWC 2 cut(s) 163, 631
BsiSI CCGG 1 cut(s) 588
BslI CCNNNNNNNGG 2 cut(s) 83, 179
BsmAI GTCTC 1 cut(s) 501
BsmBI CGTCTC 1 cut(s) 501
BsmI GAATGC 1 cut(s) 319
BsnI GGCC 2 cut(s) 262, 591
Bsp1286I GDGCHC 2 cut(s) 163, 631
Bsp1407I TGTACA 1 cut(s) 127
Bsp143I GATC 3 cut(s) 38, 67, 327
Bsp1720I GCTNAGC 2 cut(s) 297, 630
Bsp19I CCATGG 1 cut(s) 136
BspACI CCGC 1 cut(s) 601
BspANI GGCC 2 cut(s) 262, 591
BspCNI CTCAG 2 cut(s) 289, 643
BspHI TCATGA 1 cut(s) 163
BspLI GGNNCC 3 cut(s) 40, 198, 383
BspPI GGATC 2 cut(s) 33, 46
BsrDI GCAATG 1 cut(s) 361
BsrGI TGTACA 1 cut(s) 127
BsrI ACTGG 2 cut(s) 184, 382
BssECI CCNNGG 1 cut(s) 136
BssMI GATC 3 cut(s) 38, 67, 327
BssT1I CCWWGG 1 cut(s) 136
Bst4CI ACNGT 2 cut(s) 35, 280
BstAUI TGTACA 1 cut(s) 127
BstC8I GCNNGC 2 cut(s) 294, 411
BstDEI CTNAG 2 cut(s) 297, 630
BstDSI CCRYGG 1 cut(s) 136
BstF5I GGATG 3 cut(s) 259, 575, 584
BstKTI GATC 3 cut(s) 41, 70, 330
BstMAI GTCTC 1 cut(s) 501
BstMBI GATC 3 cut(s) 38, 67, 327
BstMWI GCNNNNNNNGC 3 cut(s) 158, 298, 429
BstX2I RGATCY 1 cut(s) 38
BstYI RGATCY 1 cut(s) 38
BsuI GTATCC 1 cut(s) 180
BsuRI GGCC 2 cut(s) 262, 591
BtgI CCRYGG 1 cut(s) 136
BtrI CACGTC 1 cut(s) 626
BtsCI GGATG 3 cut(s) 259, 575, 584
BtsIMutI CAGTG 2 cut(s) 24, 40
Cac8I GCNNGC 2 cut(s) 294, 411
CciI TCATGA 1 cut(s) 163
Cfr13I GGNCC 2 cut(s) 260, 590
Csp6I GTAC 2 cut(s) 52, 128
CspCI CAANNNNNGTGG 2 cut(s) 522, 557
CviAII CATG 2 cut(s) 137, 164
CviQI GTAC 2 cut(s) 52, 128
DdeI CTNAG 2 cut(s) 297, 630
DpnI GATC 3 cut(s) 40, 69, 329
DpnII GATC 3 cut(s) 38, 67, 327
DraI TTTAAA 1 cut(s) 456
Ecl136II GAGCTC 1 cut(s) 161
Eco130I CCWWGG 1 cut(s) 136
Eco24I GRGCYC 1 cut(s) 163
Eco53kI GAGCTC 1 cut(s) 161
Eco57I CTGAAG 1 cut(s) 648
EcoICRI GAGCTC 1 cut(s) 161
EcoT14I CCWWGG 1 cut(s) 136
EcoT22I ATGCAT 2 cut(s) 154, 319
EcoT38I GRGCYC 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 136
Esp3I CGTCTC 1 cut(s) 501
FaeI CATG 2 cut(s) 140, 167
FatI CATG 2 cut(s) 136, 163
FauI CCCGC 1 cut(s) 608
FauNDI CATATG 1 cut(s) 499
FbaI TGATCA 1 cut(s) 327
FblI GTMKAC 1 cut(s) 114
FokI GGATG 3 cut(s) 266, 562, 571
FriOI GRGCYC 1 cut(s) 163
GsaI CCCAGC 1 cut(s) 104
HaeIII GGCC 2 cut(s) 262, 591
HapII CCGG 1 cut(s) 588
Hin1II CATG 2 cut(s) 140, 167
HinfI GANTC 2 cut(s) 111, 417
HpaII CCGG 1 cut(s) 588
HphI GGTGA 3 cut(s) 283, 292, 322
Hpy166II GTNNAC 3 cut(s) 52, 115, 128
Hpy188I TCNGA 1 cut(s) 72
Hpy188III TCNNGA 1 cut(s) 164
Hpy8I GTNNAC 3 cut(s) 52, 115, 128
Hpy99I CGWCG 1 cut(s) 646
HpyAV CCTTC 4 cut(s) 185, 206, 497, 561
HpyCH4III ACNGT 2 cut(s) 35, 280
HpyCH4IV ACGT 2 cut(s) 60, 625
HpyCH4V TGCA 7 cut(s) 24, 152, 317, 342, 354, 413, 432
HpyF10VI GCNNNNNNNGC 3 cut(s) 158, 298, 429
HpyF3I CTNAG 2 cut(s) 297, 630
HpySE526I ACGT 2 cut(s) 60, 625
Hsp92II CATG 2 cut(s) 140, 167
Ksp22I TGATCA 1 cut(s) 327
Kzo9I GATC 3 cut(s) 38, 67, 327
LmnI GCTCC 1 cut(s) 158
LpnPI CCDG 8 cut(s) 60, 86, 108, 165, 363, 459, 589, 601
LweI GCATC 1 cut(s) 349
MaeII ACGT 2 cut(s) 60, 625
MaeIII GTNAC 1 cut(s) 448
MalI GATC 3 cut(s) 40, 69, 329
MboI GATC 3 cut(s) 38, 67, 327
MboII GAAGA 6 cut(s) 434, 526, 552, 555, 561, 654
MfeI CAATTG 1 cut(s) 433
MflI RGATCY 1 cut(s) 38
MhlI GDGCHC 2 cut(s) 163, 631
MluCI AATT 5 cut(s) 234, 387, 394, 433, 457
MlyI GAGTC 1 cut(s) 120
MmeI TCCRAC 1 cut(s) 197
MnlI CCTC 5 cut(s) 262, 302, 437, 589, 645
Mph1103I ATGCAT 2 cut(s) 154, 319
MseI TTAA 2 cut(s) 402, 455
MslI CAYNNNNRTG 1 cut(s) 123
MspI CCGG 1 cut(s) 588
MunI CAATTG 1 cut(s) 433
Mva1269I GAATGC 1 cut(s) 319
MwoI GCNNNNNNNGC 3 cut(s) 158, 298, 429
NcoI CCATGG 1 cut(s) 136
NdeI CATATG 1 cut(s) 499
NdeII GATC 3 cut(s) 38, 67, 327
NlaIII CATG 2 cut(s) 140, 167
NlaIV GGNNCC 3 cut(s) 40, 198, 383
NsiI ATGCAT 2 cut(s) 154, 319
PagI TCATGA 1 cut(s) 163
PctI GAATGC 1 cut(s) 319
PfeI GAWTC 1 cut(s) 417
PflMI CCANNNNNTGG 1 cut(s) 179
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
PsiI TTATAA 1 cut(s) 81
Psp124BI GAGCTC 1 cut(s) 163
Psp1406I AACGTT 1 cut(s) 60
PspFI CCCAGC 1 cut(s) 100
PspN4I GGNNCC 3 cut(s) 40, 198, 383
PspPI GGNCC 2 cut(s) 260, 590
PsuI RGATCY 1 cut(s) 38
RsaI GTAC 2 cut(s) 53, 129
RsaNI GTAC 2 cut(s) 52, 128
RseI CAYNNNNRTG 1 cut(s) 123
SacI GAGCTC 1 cut(s) 163
SaqAI TTAA 2 cut(s) 402, 455
Sau3AI GATC 3 cut(s) 38, 67, 327
Sau96I GGNCC 2 cut(s) 260, 590
SchI GAGTC 1 cut(s) 120
SduI GDGCHC 2 cut(s) 163, 631
SetI ASST 7 cut(s) 63, 79, 163, 273, 294, 553, 628
SfaNI GCATC 1 cut(s) 349
SmiMI CAYNNNNRTG 1 cut(s) 123
Sse9I AATT 5 cut(s) 234, 387, 394, 433, 457
SsiI CCGC 1 cut(s) 601
SstI GAGCTC 1 cut(s) 163
StyI CCWWGG 1 cut(s) 136
TaaI ACNGT 2 cut(s) 35, 280
TaiI ACGT 2 cut(s) 63, 628
TasI AATT 5 cut(s) 234, 387, 394, 433, 457
TatI WGTACW 2 cut(s) 51, 127
TfiI GAWTC 1 cut(s) 417
Tru1I TTAA 2 cut(s) 402, 455
Tru9I TTAA 2 cut(s) 402, 455
TscAI CASTG 2 cut(s) 31, 40
TspDTI ATGAA 3 cut(s) 516, 555, 561
TspGWI ACGGA 2 cut(s) 31, 266
TspRI CASTG 2 cut(s) 31, 40
Van91I CCANNNNNTGG 1 cut(s) 179
XapI RAATTY 1 cut(s) 457
XcmI CCANNNNNNNNNTGG 1 cut(s) 393
XmiI GTMKAC 1 cut(s) 114
Zsp2I ATGCAT 2 cut(s) 154, 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.