FvH4_6g28860

deSI-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012076
Physical Location & Seq
Forward (+)
22284144 .. 22286415
2272 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g28860.t1

Sequence Viewer

Length: 672 bp
ATGCTGTGCAGAAAGAGTGTCTGCACTGATGACAGTGGATCGGTGCCTGTGTACTTGAACGTTTATGATCTGACACCTTATAATGGCTACGCTTATTGGCTTGGTCTTGGTGTCTACCATTCTGGTGTTCAAGTTCATGGGATTGAGTATGCATTTGGAGCTCATGAGTATCCAACAACTGGGATTTTTGAGGGGGAACCAAGAAAGTGTGATGGATTTACATTTAGGAAATCAATTTTGATTGGGAAAACGGATGTTGGGCCTTTGGAGGTGAGAACAGTGATGGAACAGCTTGCAGAGCAATATAGAGGGAATGCATACAACTTGATCACCAAAAACTGCAACCATTTCTGCAATGATGCTTGTATTAGATTGACTGGAAACCCAATTCCGAATTGGGTTAATCGGCTTGCAAGAATTGGCTTTCTCTGCAATTGCGTTCTTCCTGTAACTTTAAATTCAACAAAAGTTCGTCATCACAGAATCGATGAGAAGGCAGATGAAGAAGACGAGAAGAAACTGACAAGCCAAGCAAACAATGTGGGCATATCATCTACTTCTTGTTCTTCTGCATCATCCTCTCCAGCCTGCACAACAACCCGCAGGGGTAGAAGCCGAACAAGACGTCCTCTCCCTCCATCATCGCCTTTGATTGTTGGTTCTTCATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

224

Amino Acids

24.61

Weight (kDa)

8.67

Isoelectric Point (pI)

45.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C97 PF05903 16 - 150 3.5e-52 PPPDE putative peptidase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012076)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80690 AT1G80690
fragaria_vesca FvH4_6g28860
malus_domestica MD09G1223900.v1.1 MD17G1220800.v1.1
prunus_persica Prupe.3G096200_v2.0.a1
pyrus_communis pycom17g22540
rosa_chinensis RchiOBHm_Chr2g0133411
rosa_laevigata RLG00000019329
rosa_multiflora Rmu_sc0003874.1_g000005
rosa_roxburghii Rroxscaffold_2G00111190
rosa_rugosa Rorug02G0311500 Rorug02G0311600 Rorug02G0311700
rosa_samantha Rh2AG364000 Rh2BG369900 Rh2CG347300 Rh2DG386800
rosa_wichuraiana Rw2G029650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 81
AatII GACGTC 1 cut(s) 628
AccB1I GGYRCC 1 cut(s) 43
AccB7I CCANNNNNTGG 1 cut(s) 179
AccI GTMKAC 1 cut(s) 114
AciI CCGC 1 cut(s) 601
AclI AACGTT 1 cut(s) 60
AclWI GGATC 1 cut(s) 46
AcsI RAATTY 1 cut(s) 457
AcyI GRCGYC 1 cut(s) 625
AfaI GTAC 1 cut(s) 53
AfiI CCNNNNNNNGG 2 cut(s) 83, 179
AgsI TTSAA 3 cut(s) 58, 131, 462
AloI GAACNNNNNNTCC 2 cut(s) 610, 642
AluBI AGCT 2 cut(s) 161, 292
AluI AGCT 2 cut(s) 161, 292
Alw21I GWGCWC 1 cut(s) 163
AlwI GGATC 1 cut(s) 46
AoxI GGCC 1 cut(s) 260
ApoI RAATTY 1 cut(s) 457
ArsI GACNNNNNNTTYG 2 cut(s) 610, 642
AspS9I GGNCC 1 cut(s) 260
AsuHPI GGTGA 2 cut(s) 283, 322
BanI GGYRCC 1 cut(s) 43
BanII GRGCYC 1 cut(s) 163
BbsI GAAGAC 1 cut(s) 513
Bbv12I GWGCWC 1 cut(s) 163
BccI CCATC 3 cut(s) 206, 277, 646
BciVI GTATCC 1 cut(s) 180
BclI TGATCA 1 cut(s) 327
BfuI GTATCC 1 cut(s) 180
BmgT120I GGNCC 1 cut(s) 260
BmiI GGNNCC 2 cut(s) 45, 198
BmrI ACTGGG 1 cut(s) 189
BmsI GCATC 2 cut(s) 349, 581
BmuI ACTGGG 1 cut(s) 189
BpiI GAAGAC 1 cut(s) 513
BpmI CTGGAG 1 cut(s) 567
Bsa29I ATCGAT 1 cut(s) 486
BsaHI GRCGYC 1 cut(s) 625
BsaXI ACNNNNNCTCC 2 cut(s) 615, 645
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 179
Bse1I ACTGG 2 cut(s) 184, 382
Bse3DI GCAATG 1 cut(s) 361
BseCI ATCGAT 1 cut(s) 486
BseGI GGATG 3 cut(s) 259, 575, 665
BseLI CCNNNNNNNGG 2 cut(s) 83, 179
BseMI GCAATG 1 cut(s) 361
BseNI ACTGG 2 cut(s) 184, 382
BsgI GTGCAG 3 cut(s) 7, 28, 574
BshFI GGCC 1 cut(s) 262
BshNI GGYRCC 1 cut(s) 43
BshVI ATCGAT 1 cut(s) 486
BsiHKAI GWGCWC 1 cut(s) 163
BslI CCNNNNNNNGG 2 cut(s) 83, 179
BsmI GAATGC 1 cut(s) 319
BsnI GGCC 1 cut(s) 262
Bsp1286I GDGCHC 1 cut(s) 163
Bsp143I GATC 3 cut(s) 38, 67, 327
BspACI CCGC 1 cut(s) 601
BspANI GGCC 1 cut(s) 262
BspDI ATCGAT 1 cut(s) 486
BspHI TCATGA 1 cut(s) 163
BspLI GGNNCC 2 cut(s) 45, 198
BspPI GGATC 1 cut(s) 46
BspT107I GGYRCC 1 cut(s) 43
BsrDI GCAATG 1 cut(s) 361
BsrI ACTGG 2 cut(s) 184, 382
BssMI GATC 3 cut(s) 38, 67, 327
BssNI GRCGYC 1 cut(s) 625
Bst4CI ACNGT 2 cut(s) 35, 280
BstACI GRCGYC 1 cut(s) 625
BstC8I GCNNGC 3 cut(s) 294, 411, 589
BstF5I GGATG 3 cut(s) 259, 575, 665
BstKTI GATC 3 cut(s) 41, 70, 330
BstMBI GATC 3 cut(s) 38, 67, 327
BstMWI GCNNNNNNNGC 3 cut(s) 158, 298, 429
BstV2I GAAGAC 1 cut(s) 513
Bsu15I ATCGAT 1 cut(s) 486
BsuI GTATCC 1 cut(s) 180
BsuRI GGCC 1 cut(s) 262
BsuTUI ATCGAT 1 cut(s) 486
BtgZI GCGATG 1 cut(s) 627
BtsCI GGATG 3 cut(s) 259, 575, 665
BtsIMutI CAGTG 3 cut(s) 24, 40, 285
Cac8I GCNNGC 3 cut(s) 294, 411, 589
CciI TCATGA 1 cut(s) 163
Cfr13I GGNCC 1 cut(s) 260
ClaI ATCGAT 1 cut(s) 486
Csp6I GTAC 1 cut(s) 52
CspCI CAANNNNNGTGG 2 cut(s) 522, 557
CviAII CATG 2 cut(s) 137, 164
CviQI GTAC 1 cut(s) 52
DpnI GATC 3 cut(s) 40, 69, 329
DpnII GATC 3 cut(s) 38, 67, 327
DraI TTTAAA 1 cut(s) 456
Ecl136II GAGCTC 1 cut(s) 161
Eco24I GRGCYC 1 cut(s) 163
Eco53kI GAGCTC 1 cut(s) 161
EcoICRI GAGCTC 1 cut(s) 161
EcoT22I ATGCAT 2 cut(s) 154, 319
EcoT38I GRGCYC 1 cut(s) 163
FaeI CATG 2 cut(s) 140, 167
FaiI YATR 8 cut(s) 66, 81, 138, 150, 165, 306, 319, 548
FatI CATG 2 cut(s) 136, 163
FauI CCCGC 1 cut(s) 608
FbaI TGATCA 1 cut(s) 327
FblI GTMKAC 1 cut(s) 114
FokI GGATG 3 cut(s) 266, 562, 652
FriOI GRGCYC 1 cut(s) 163
GsuI CTGGAG 1 cut(s) 567
HaeIII GGCC 1 cut(s) 262
Hin1I GRCGYC 1 cut(s) 625
Hin1II CATG 2 cut(s) 140, 167
HinfI GANTC 1 cut(s) 483
HphI GGTGA 2 cut(s) 283, 322
Hpy166II GTNNAC 2 cut(s) 52, 115
Hpy188I TCNGA 2 cut(s) 72, 393
Hpy188III TCNNGA 2 cut(s) 164, 669
Hpy8I GTNNAC 2 cut(s) 52, 115
HpyAV CCTTC 1 cut(s) 487
HpyCH4III ACNGT 2 cut(s) 35, 280
HpyCH4IV ACGT 2 cut(s) 60, 625
HpyF10VI GCNNNNNNNGC 3 cut(s) 158, 298, 429
HpySE526I ACGT 2 cut(s) 60, 625
Hsp92I GRCGYC 1 cut(s) 625
Hsp92II CATG 2 cut(s) 140, 167
Ksp22I TGATCA 1 cut(s) 327
Kzo9I GATC 3 cut(s) 38, 67, 327
LmnI GCTCC 1 cut(s) 158
LpnPI CCDG 8 cut(s) 60, 108, 165, 363, 459, 589, 597, 601
LweI GCATC 2 cut(s) 349, 581
MaeII ACGT 2 cut(s) 60, 625
MaeIII GTNAC 1 cut(s) 448
MalI GATC 3 cut(s) 40, 69, 329
MboI GATC 3 cut(s) 38, 67, 327
MboII GAAGA 6 cut(s) 434, 515, 518, 526, 558, 654
MfeI CAATTG 1 cut(s) 433
MhlI GDGCHC 1 cut(s) 163
MluCI AATT 6 cut(s) 234, 387, 394, 417, 433, 457
MmeI TCCRAC 1 cut(s) 197
MnlI CCTC 6 cut(s) 184, 262, 302, 589, 639, 645
Mph1103I ATGCAT 2 cut(s) 154, 319
MseI TTAA 2 cut(s) 402, 455
MslI CAYNNNNRTG 1 cut(s) 123
MunI CAATTG 1 cut(s) 433
Mva1269I GAATGC 1 cut(s) 319
MwoI GCNNNNNNNGC 3 cut(s) 158, 298, 429
NdeII GATC 3 cut(s) 38, 67, 327
NlaIII CATG 2 cut(s) 140, 167
NlaIV GGNNCC 2 cut(s) 45, 198
NsiI ATGCAT 2 cut(s) 154, 319
PagI TCATGA 1 cut(s) 163
PctI GAATGC 1 cut(s) 319
PfeI GAWTC 1 cut(s) 483
PflMI CCANNNNNTGG 1 cut(s) 179
PsiI TTATAA 1 cut(s) 81
Psp124BI GAGCTC 1 cut(s) 163
Psp1406I AACGTT 1 cut(s) 60
PspN4I GGNNCC 2 cut(s) 45, 198
PspPI GGNCC 1 cut(s) 260
RsaI GTAC 1 cut(s) 53
RsaNI GTAC 1 cut(s) 52
RseI CAYNNNNRTG 1 cut(s) 123
SacI GAGCTC 1 cut(s) 163
SaqAI TTAA 2 cut(s) 402, 455
Sau3AI GATC 3 cut(s) 38, 67, 327
Sau96I GGNCC 1 cut(s) 260
SduI GDGCHC 1 cut(s) 163
SetI ASST 6 cut(s) 63, 79, 163, 273, 294, 628
SfaNI GCATC 2 cut(s) 349, 581
SmiMI CAYNNNNRTG 1 cut(s) 123
Sse9I AATT 6 cut(s) 234, 387, 394, 417, 433, 457
SsiI CCGC 1 cut(s) 601
SstI GAGCTC 1 cut(s) 163
TaaI ACNGT 2 cut(s) 35, 280
TaiI ACGT 2 cut(s) 63, 628
TaqI TCGA 1 cut(s) 486
TasI AATT 6 cut(s) 234, 387, 394, 417, 433, 457
TatI WGTACW 1 cut(s) 51
TfiI GAWTC 1 cut(s) 483
Tru1I TTAA 2 cut(s) 402, 455
Tru9I TTAA 2 cut(s) 402, 455
TscAI CASTG 3 cut(s) 31, 40, 285
TspDTI ATGAA 3 cut(s) 125, 516, 654
TspGWI ACGGA 1 cut(s) 266
TspRI CASTG 3 cut(s) 31, 40, 285
Van91I CCANNNNNTGG 1 cut(s) 179
XapI RAATTY 1 cut(s) 457
XcmI CCANNNNNNNNNTGG 1 cut(s) 393
XmiI GTMKAC 1 cut(s) 114
ZraI GACGTC 1 cut(s) 626
Zsp2I ATGCAT 2 cut(s) 154, 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.