Rh2AG364000

deSI-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0012076
Physical Location & Seq
Forward (+)
53907120 .. 53909337
2218 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG364000.1

Sequence Viewer

Length: 588 bp
ATGTCATTGTTTTGTTTTGTGGAGGTTTTGATTGGATTTGCTTGTGCAGTCCATGGGATTGAGTATGCATTTGGAGCTCACGAGTATCCAACAACTGGGATTTTTGAAGGGGAACCAAAAAAGTGTGAGGGATTTACATTTAGGAAAGCAATTTTGATTGGGAAAACGGATGTTGGGCCTTTAGAGGTGAGAACGGTGATGGAACAGCTTGCTGAGCAATATAGAGGGAATGCATACAACTTGATCACCAAAAACTGCAACCATTTCTGCAATGATGCTTGTATGAGATTGACTGGGAACCCAATTCCAAATTGGGTTAATCGGCTTGCAAGAATCGGCTTCCTCTGCAATTGTGTTCTTCCTGTAACTTTAAATTCAACAAAAGTTCGTCATCACAGAATAGACGATAAGGCATATGAAGGAGACGAGAAGAAACTAACAAGCCAAGCAAACAGTGTGGCAATACCTTCTACTTCTTCTTCATCTTCATCATCCTCTCCATCCGGCCCAACAACCCGCAGGGGTAGAAGCCGAACAAGACGTGCTCATCCTCCTACGTCACCTTTGATTGTTGGTTCTTCATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

195

Amino Acids

21.38

Weight (kDa)

9.1

Isoelectric Point (pI)

42.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C97 PF05903 16 - 122 1.6e-39 PPPDE putative peptidase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012076)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80690 AT1G80690
fragaria_vesca FvH4_6g28860
malus_domestica MD09G1223900.v1.1 MD17G1220800.v1.1
prunus_persica Prupe.3G096200_v2.0.a1
pyrus_communis pycom17g22540
rosa_chinensis RchiOBHm_Chr2g0133411
rosa_laevigata RLG00000019329
rosa_multiflora Rmu_sc0003874.1_g000005
rosa_roxburghii Rroxscaffold_2G00111190
rosa_rugosa Rorug02G0311500 Rorug02G0311600 Rorug02G0311700
rosa_samantha Rh2AG364000 Rh2BG369900 Rh2CG347300 Rh2DG386800
rosa_wichuraiana Rw2G029650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 95
AciI CCGC 1 cut(s) 517
AcsI RAATTY 1 cut(s) 373
AfiI CCNNNNNNNGG 1 cut(s) 95
AgsI TTSAA 2 cut(s) 107, 378
AjiI CACGTC 1 cut(s) 542
AluBI AGCT 2 cut(s) 77, 208
AluI AGCT 2 cut(s) 77, 208
Alw21I GWGCWC 2 cut(s) 79, 547
Alw26I GTCTC 1 cut(s) 417
AoxI GGCC 2 cut(s) 176, 505
ApoI RAATTY 1 cut(s) 373
AspS9I GGNCC 2 cut(s) 176, 506
AsuHPI GGTGA 4 cut(s) 199, 208, 238, 552
BanII GRGCYC 1 cut(s) 79
BauI CACGAG 1 cut(s) 80
Bbv12I GWGCWC 2 cut(s) 79, 547
BccI CCATC 2 cut(s) 193, 508
BciVI GTATCC 1 cut(s) 96
BclI TGATCA 1 cut(s) 243
BcoDI GTCTC 1 cut(s) 417
BfuI GTATCC 1 cut(s) 96
BlpI GCTNAGC 1 cut(s) 213
BmgBI CACGTC 1 cut(s) 542
BmgT120I GGNCC 2 cut(s) 176, 506
BmiI GGNNCC 2 cut(s) 114, 299
BmrI ACTGGG 2 cut(s) 105, 303
BmsI GCATC 1 cut(s) 265
BmuI ACTGGG 2 cut(s) 105, 303
Bpu1102I GCTNAGC 1 cut(s) 213
BsaJI CCNNGG 1 cut(s) 52
Bsc4I CCNNNNNNNGG 1 cut(s) 95
Bse1I ACTGG 2 cut(s) 100, 298
Bse3DI GCAATG 1 cut(s) 277
BseDI CCNNGG 1 cut(s) 52
BseGI GGATG 5 cut(s) 175, 491, 500, 547, 581
BseLI CCNNNNNNNGG 1 cut(s) 95
BseMI GCAATG 1 cut(s) 277
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 2 cut(s) 100, 298
BsgI GTGCAG 1 cut(s) 66
BshFI GGCC 2 cut(s) 178, 507
BsiHKAI GWGCWC 2 cut(s) 79, 547
BsiSI CCGG 1 cut(s) 504
BslI CCNNNNNNNGG 1 cut(s) 95
BsmAI GTCTC 1 cut(s) 417
BsmBI CGTCTC 1 cut(s) 417
BsmI GAATGC 1 cut(s) 235
BsnI GGCC 2 cut(s) 178, 507
Bsp1286I GDGCHC 2 cut(s) 79, 547
Bsp143I GATC 1 cut(s) 243
Bsp1720I GCTNAGC 1 cut(s) 213
Bsp19I CCATGG 1 cut(s) 52
BspACI CCGC 1 cut(s) 517
BspANI GGCC 2 cut(s) 178, 507
BspCNI CTCAG 1 cut(s) 205
BspLI GGNNCC 2 cut(s) 114, 299
BsrDI GCAATG 1 cut(s) 277
BsrI ACTGG 2 cut(s) 100, 298
BssECI CCNNGG 1 cut(s) 52
BssMI GATC 1 cut(s) 243
BssSI CACGAG 1 cut(s) 80
BssT1I CCWWGG 1 cut(s) 52
Bst2BI CACGAG 1 cut(s) 80
Bst4CI ACNGT 2 cut(s) 196, 455
BstC8I GCNNGC 2 cut(s) 210, 327
BstDEI CTNAG 1 cut(s) 213
BstDSI CCRYGG 1 cut(s) 52
BstF5I GGATG 5 cut(s) 175, 491, 500, 547, 581
BstKTI GATC 1 cut(s) 246
BstMAI GTCTC 1 cut(s) 417
BstMBI GATC 1 cut(s) 243
BstMWI GCNNNNNNNGC 3 cut(s) 74, 214, 345
BsuI GTATCC 1 cut(s) 96
BsuRI GGCC 2 cut(s) 178, 507
BtgI CCRYGG 1 cut(s) 52
BtrI CACGTC 1 cut(s) 542
BtsCI GGATG 5 cut(s) 175, 491, 500, 547, 581
BtsIMutI CAGTG 1 cut(s) 460
Cac8I GCNNGC 2 cut(s) 210, 327
Cfr13I GGNCC 2 cut(s) 176, 506
CspCI CAANNNNNGTGG 2 cut(s) 438, 473
CviAII CATG 1 cut(s) 53
CviJI RGCY 8 cut(s) 77, 178, 208, 325, 339, 444, 507, 531
CviKI_1 RGCY 8 cut(s) 77, 178, 208, 325, 339, 444, 507, 531
DdeI CTNAG 1 cut(s) 213
DpnI GATC 1 cut(s) 245
DpnII GATC 1 cut(s) 243
DraI TTTAAA 1 cut(s) 372
Ecl136II GAGCTC 1 cut(s) 77
Eco130I CCWWGG 1 cut(s) 52
Eco24I GRGCYC 1 cut(s) 79
Eco53kI GAGCTC 1 cut(s) 77
EcoICRI GAGCTC 1 cut(s) 77
EcoT14I CCWWGG 1 cut(s) 52
EcoT22I ATGCAT 2 cut(s) 70, 235
EcoT38I GRGCYC 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 52
Esp3I CGTCTC 1 cut(s) 417
FaeI CATG 1 cut(s) 56
FaiI YATR 7 cut(s) 54, 66, 222, 235, 284, 415, 417
FatI CATG 1 cut(s) 52
FauI CCCGC 1 cut(s) 524
FauNDI CATATG 1 cut(s) 415
FbaI TGATCA 1 cut(s) 243
FokI GGATG 5 cut(s) 182, 478, 487, 534, 568
FriOI GRGCYC 1 cut(s) 79
HaeIII GGCC 2 cut(s) 178, 507
HapII CCGG 1 cut(s) 504
Hin1II CATG 1 cut(s) 56
HinfI GANTC 1 cut(s) 333
HpaII CCGG 1 cut(s) 504
HphI GGTGA 4 cut(s) 199, 208, 238, 552
Hpy188III TCNNGA 2 cut(s) 80, 585
HpyAV CCTTC 3 cut(s) 101, 413, 477
HpyCH4III ACNGT 2 cut(s) 196, 455
HpyCH4IV ACGT 2 cut(s) 541, 557
HpyCH4V TGCA 7 cut(s) 47, 68, 233, 258, 270, 329, 348
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 214, 345
HpyF3I CTNAG 1 cut(s) 213
HpySE526I ACGT 2 cut(s) 541, 557
Hsp92II CATG 1 cut(s) 56
Ksp22I TGATCA 1 cut(s) 243
Kzo9I GATC 1 cut(s) 243
LmnI GCTCC 1 cut(s) 74
LpnPI CCDG 5 cut(s) 81, 279, 375, 505, 517
LweI GCATC 1 cut(s) 265
MaeII ACGT 2 cut(s) 541, 557
MaeIII GTNAC 2 cut(s) 364, 558
MalI GATC 1 cut(s) 245
MboI GATC 1 cut(s) 243
MboII GAAGA 6 cut(s) 350, 442, 468, 471, 477, 570
MfeI CAATTG 1 cut(s) 349
MhlI GDGCHC 2 cut(s) 79, 547
MluCI AATT 5 cut(s) 150, 303, 310, 349, 373
MmeI TCCRAC 1 cut(s) 113
MnlI CCTC 7 cut(s) 16, 121, 178, 218, 353, 505, 561
Mph1103I ATGCAT 2 cut(s) 70, 235
MseI TTAA 2 cut(s) 318, 371
MspI CCGG 1 cut(s) 504
MunI CAATTG 1 cut(s) 349
Mva1269I GAATGC 1 cut(s) 235
MwoI GCNNNNNNNGC 3 cut(s) 74, 214, 345
NcoI CCATGG 1 cut(s) 52
NdeI CATATG 1 cut(s) 415
NdeII GATC 1 cut(s) 243
NlaIII CATG 1 cut(s) 56
NlaIV GGNNCC 2 cut(s) 114, 299
NmuCI GTSAC 1 cut(s) 558
NsiI ATGCAT 2 cut(s) 70, 235
PctI GAATGC 1 cut(s) 235
PfeI GAWTC 1 cut(s) 333
PflMI CCANNNNNTGG 1 cut(s) 95
Psp124BI GAGCTC 1 cut(s) 79
PspN4I GGNNCC 2 cut(s) 114, 299
PspPI GGNCC 2 cut(s) 176, 506
SacI GAGCTC 1 cut(s) 79
SaqAI TTAA 2 cut(s) 318, 371
Sau3AI GATC 1 cut(s) 243
Sau96I GGNCC 2 cut(s) 176, 506
SduI GDGCHC 2 cut(s) 79, 547
SetI ASST 8 cut(s) 27, 79, 189, 210, 469, 544, 560, 565
SfaNI GCATC 1 cut(s) 265
Sse9I AATT 5 cut(s) 150, 303, 310, 349, 373
SsiI CCGC 1 cut(s) 517
SstI GAGCTC 1 cut(s) 79
StyI CCWWGG 1 cut(s) 52
TaaI ACNGT 2 cut(s) 196, 455
TaiI ACGT 2 cut(s) 544, 560
TasI AATT 5 cut(s) 150, 303, 310, 349, 373
TfiI GAWTC 1 cut(s) 333
Tru1I TTAA 2 cut(s) 318, 371
Tru9I TTAA 2 cut(s) 318, 371
TscAI CASTG 1 cut(s) 460
TseFI GTSAC 1 cut(s) 558
Tsp45I GTSAC 1 cut(s) 558
TspDTI ATGAA 4 cut(s) 432, 471, 477, 570
TspGWI ACGGA 1 cut(s) 182
TspRI CASTG 1 cut(s) 460
Van91I CCANNNNNTGG 1 cut(s) 95
XapI RAATTY 1 cut(s) 373
XcmI CCANNNNNNNNNTGG 1 cut(s) 309
Zsp2I ATGCAT 2 cut(s) 70, 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.