Rmu_sc0003874.1_g000005

deSI-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003874.1
OG0012076
Physical Location & Seq
Reverse (-)
14569 .. 16039
1471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003874.1_g000005.1.cds

Sequence Viewer

Length: 672 bp
atgctgtgtcgaaagagtgtctccactgatgacactggatccatgcctgtgtacttgaacgtttatgatctgacaccttataatggctacgcttattggcttggtcttggagtctaccattctggtgtacaagtccatgggattgagtatgcatttggagctcacgagtatccaacaactgggatttttgaaggggaaccaaaaaagtgtgagggatttacatttaggaaagcaattttgattgggaaaacggatgttgggcctttagaggtgagaacggtgatggaacagcttgctgagcaatatagagggaatgcatacaacttgatcaccaaaaactgcaaccatttctgcaatgatgcttgtatgagattgactgggaacccaattccaaattgggttaatcggcttgcaagaatcggcttcctctgcaattgtgttcttcctgtaactttaaattcaacaaaagttcgtcatcacagaatagacgataaggcatatgaaggagacgagaagaaactaacaagccaagcaaacaatgtggcaataccttctacttcttcttcatcttcatcatcctctccatccggcccaacaacccgcagggggagaagccgaacaagacgtgctcatcctccttcgtcgcctttgattgttggttcttcatcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

223

Amino Acids

24.58

Weight (kDa)

9.07

Isoelectric Point (pI)

38.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012076)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80690 AT1G80690
fragaria_vesca FvH4_6g28860
malus_domestica MD09G1223900.v1.1 MD17G1220800.v1.1
prunus_persica Prupe.3G096200_v2.0.a1
pyrus_communis pycom17g22540
rosa_chinensis RchiOBHm_Chr2g0133411
rosa_laevigata RLG00000019329
rosa_multiflora Rmu_sc0003874.1_g000005
rosa_roxburghii Rroxscaffold_2G00111190
rosa_rugosa Rorug02G0311500 Rorug02G0311600 Rorug02G0311700
rosa_samantha Rh2AG364000 Rh2BG369900 Rh2CG347300 Rh2DG386800
rosa_wichuraiana Rw2G029650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 81
AccB7I CCANNNNNTGG 1 cut(s) 179
AccI GTMKAC 1 cut(s) 114
AciI CCGC 1 cut(s) 601
AclI AACGTT 1 cut(s) 60
AclWI GGATC 2 cut(s) 33, 46
AcsI RAATTY 1 cut(s) 457
AfaI GTAC 2 cut(s) 53, 129
AfiI CCNNNNNNNGG 3 cut(s) 83, 179, 606
AgsI TTSAA 3 cut(s) 58, 191, 462
AjiI CACGTC 1 cut(s) 626
AluBI AGCT 2 cut(s) 161, 292
AluI AGCT 2 cut(s) 161, 292
Alw21I GWGCWC 2 cut(s) 163, 631
Alw26I GTCTC 2 cut(s) 25, 501
AlwI GGATC 2 cut(s) 33, 46
AoxI GGCC 2 cut(s) 260, 589
ApoI RAATTY 1 cut(s) 457
AspS9I GGNCC 2 cut(s) 260, 590
AsuHPI GGTGA 3 cut(s) 283, 292, 322
BamHI GGATCC 1 cut(s) 38
BanII GRGCYC 1 cut(s) 163
BauI CACGAG 1 cut(s) 164
Bbv12I GWGCWC 2 cut(s) 163, 631
BccI CCATC 2 cut(s) 277, 592
BciVI GTATCC 1 cut(s) 180
BclI TGATCA 1 cut(s) 327
BcoDI GTCTC 2 cut(s) 25, 501
BfuI GTATCC 1 cut(s) 180
BlpI GCTNAGC 1 cut(s) 297
BmgBI CACGTC 1 cut(s) 626
BmgT120I GGNCC 2 cut(s) 260, 590
BmiI GGNNCC 3 cut(s) 40, 198, 383
BmrI ACTGGG 2 cut(s) 189, 387
BmsI GCATC 1 cut(s) 349
BmuI ACTGGG 2 cut(s) 189, 387
Bpu1102I GCTNAGC 1 cut(s) 297
BsaJI CCNNGG 1 cut(s) 136
Bsc4I CCNNNNNNNGG 3 cut(s) 83, 179, 606
Bse1I ACTGG 3 cut(s) 40, 184, 382
Bse3DI GCAATG 1 cut(s) 361
BseDI CCNNGG 1 cut(s) 136
BseGI GGATG 5 cut(s) 259, 575, 584, 631, 665
BseLI CCNNNNNNNGG 3 cut(s) 83, 179, 606
BseMI GCAATG 1 cut(s) 361
BseMII CTCAG 1 cut(s) 288
BseNI ACTGG 3 cut(s) 40, 184, 382
BshFI GGCC 2 cut(s) 262, 591
BsiHKAI GWGCWC 2 cut(s) 163, 631
BsiSI CCGG 1 cut(s) 588
BslI CCNNNNNNNGG 3 cut(s) 83, 179, 606
BsmAI GTCTC 2 cut(s) 25, 501
BsmBI CGTCTC 1 cut(s) 501
BsmI GAATGC 1 cut(s) 319
BsnI GGCC 2 cut(s) 262, 591
Bsp1286I GDGCHC 2 cut(s) 163, 631
Bsp1407I TGTACA 1 cut(s) 127
Bsp143I GATC 3 cut(s) 38, 67, 327
Bsp1720I GCTNAGC 1 cut(s) 297
Bsp19I CCATGG 1 cut(s) 136
BspACI CCGC 1 cut(s) 601
BspANI GGCC 2 cut(s) 262, 591
BspCNI CTCAG 1 cut(s) 289
BspLI GGNNCC 3 cut(s) 40, 198, 383
BspPI GGATC 2 cut(s) 33, 46
BsrDI GCAATG 1 cut(s) 361
BsrGI TGTACA 1 cut(s) 127
BsrI ACTGG 3 cut(s) 40, 184, 382
BssECI CCNNGG 1 cut(s) 136
BssMI GATC 3 cut(s) 38, 67, 327
BssSI CACGAG 1 cut(s) 164
BssT1I CCWWGG 1 cut(s) 136
Bst2BI CACGAG 1 cut(s) 164
Bst4CI ACNGT 1 cut(s) 280
BstAUI TGTACA 1 cut(s) 127
BstC8I GCNNGC 2 cut(s) 294, 411
BstDEI CTNAG 1 cut(s) 297
BstDSI CCRYGG 1 cut(s) 136
BstF5I GGATG 5 cut(s) 259, 575, 584, 631, 665
BstKTI GATC 3 cut(s) 41, 70, 330
BstMAI GTCTC 2 cut(s) 25, 501
BstMBI GATC 3 cut(s) 38, 67, 327
BstMWI GCNNNNNNNGC 3 cut(s) 158, 298, 429
BstX2I RGATCY 1 cut(s) 38
BstYI RGATCY 1 cut(s) 38
BsuI GTATCC 1 cut(s) 180
BsuRI GGCC 2 cut(s) 262, 591
BtgI CCRYGG 1 cut(s) 136
BtrI CACGTC 1 cut(s) 626
BtsCI GGATG 5 cut(s) 259, 575, 584, 631, 665
BtsIMutI CAGTG 2 cut(s) 24, 33
Cac8I GCNNGC 2 cut(s) 294, 411
Cfr13I GGNCC 2 cut(s) 260, 590
Csp6I GTAC 2 cut(s) 52, 128
CspCI CAANNNNNGTGG 2 cut(s) 522, 557
CviAII CATG 2 cut(s) 43, 137
CviQI GTAC 2 cut(s) 52, 128
DdeI CTNAG 1 cut(s) 297
DpnI GATC 3 cut(s) 40, 69, 329
DpnII GATC 3 cut(s) 38, 67, 327
DraI TTTAAA 1 cut(s) 456
Ecl136II GAGCTC 1 cut(s) 161
Eco130I CCWWGG 1 cut(s) 136
Eco24I GRGCYC 1 cut(s) 163
Eco53kI GAGCTC 1 cut(s) 161
EcoICRI GAGCTC 1 cut(s) 161
EcoT14I CCWWGG 1 cut(s) 136
EcoT22I ATGCAT 2 cut(s) 154, 319
EcoT38I GRGCYC 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 136
Esp3I CGTCTC 1 cut(s) 501
FaeI CATG 2 cut(s) 46, 140
FatI CATG 2 cut(s) 42, 136
FauI CCCGC 1 cut(s) 608
FauNDI CATATG 1 cut(s) 499
FbaI TGATCA 1 cut(s) 327
FblI GTMKAC 1 cut(s) 114
FokI GGATG 5 cut(s) 266, 562, 571, 618, 652
FriOI GRGCYC 1 cut(s) 163
HaeIII GGCC 2 cut(s) 262, 591
HapII CCGG 1 cut(s) 588
Hin1II CATG 2 cut(s) 46, 140
HinfI GANTC 2 cut(s) 111, 417
HpaII CCGG 1 cut(s) 588
HphI GGTGA 3 cut(s) 283, 292, 322
Hpy166II GTNNAC 3 cut(s) 52, 115, 128
Hpy188I TCNGA 1 cut(s) 72
Hpy188III TCNNGA 2 cut(s) 164, 669
Hpy8I GTNNAC 3 cut(s) 52, 115, 128
Hpy99I CGWCG 1 cut(s) 646
HpyAV CCTTC 4 cut(s) 185, 497, 561, 648
HpyCH4III ACNGT 1 cut(s) 280
HpyCH4IV ACGT 2 cut(s) 60, 625
HpyCH4V TGCA 6 cut(s) 152, 317, 342, 354, 413, 432
HpyF10VI GCNNNNNNNGC 3 cut(s) 158, 298, 429
HpyF3I CTNAG 1 cut(s) 297
HpySE526I ACGT 2 cut(s) 60, 625
Hsp92II CATG 2 cut(s) 46, 140
Ksp22I TGATCA 1 cut(s) 327
Kzo9I GATC 3 cut(s) 38, 67, 327
LmnI GCTCC 1 cut(s) 158
LpnPI CCDG 8 cut(s) 21, 60, 108, 165, 363, 459, 589, 601
LweI GCATC 1 cut(s) 349
MaeII ACGT 2 cut(s) 60, 625
MaeIII GTNAC 1 cut(s) 448
MalI GATC 3 cut(s) 40, 69, 329
MboI GATC 3 cut(s) 38, 67, 327
MboII GAAGA 6 cut(s) 434, 526, 552, 555, 561, 654
MfeI CAATTG 1 cut(s) 433
MflI RGATCY 1 cut(s) 38
MhlI GDGCHC 2 cut(s) 163, 631
MluCI AATT 5 cut(s) 234, 387, 394, 433, 457
MlyI GAGTC 1 cut(s) 120
MmeI TCCRAC 1 cut(s) 197
MnlI CCTC 6 cut(s) 205, 262, 302, 437, 589, 645
Mph1103I ATGCAT 2 cut(s) 154, 319
MseI TTAA 2 cut(s) 402, 455
MslI CAYNNNNRTG 2 cut(s) 47, 123
MspI CCGG 1 cut(s) 588
MunI CAATTG 1 cut(s) 433
Mva1269I GAATGC 1 cut(s) 319
MwoI GCNNNNNNNGC 3 cut(s) 158, 298, 429
NcoI CCATGG 1 cut(s) 136
NdeI CATATG 1 cut(s) 499
NdeII GATC 3 cut(s) 38, 67, 327
NlaIII CATG 2 cut(s) 46, 140
NlaIV GGNNCC 3 cut(s) 40, 198, 383
NsiI ATGCAT 2 cut(s) 154, 319
PctI GAATGC 1 cut(s) 319
PfeI GAWTC 1 cut(s) 417
PflMI CCANNNNNTGG 1 cut(s) 179
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
PsiI TTATAA 1 cut(s) 81
Psp124BI GAGCTC 1 cut(s) 163
Psp1406I AACGTT 1 cut(s) 60
PspN4I GGNNCC 3 cut(s) 40, 198, 383
PspPI GGNCC 2 cut(s) 260, 590
PsuI RGATCY 1 cut(s) 38
RsaI GTAC 2 cut(s) 53, 129
RsaNI GTAC 2 cut(s) 52, 128
RseI CAYNNNNRTG 2 cut(s) 47, 123
SacI GAGCTC 1 cut(s) 163
SaqAI TTAA 2 cut(s) 402, 455
Sau3AI GATC 3 cut(s) 38, 67, 327
Sau96I GGNCC 2 cut(s) 260, 590
SchI GAGTC 1 cut(s) 120
SduI GDGCHC 2 cut(s) 163, 631
SetI ASST 7 cut(s) 63, 79, 163, 273, 294, 553, 628
SfaNI GCATC 1 cut(s) 349
SmiMI CAYNNNNRTG 2 cut(s) 47, 123
Sse9I AATT 5 cut(s) 234, 387, 394, 433, 457
SsiI CCGC 1 cut(s) 601
SstI GAGCTC 1 cut(s) 163
StyI CCWWGG 1 cut(s) 136
TaaI ACNGT 1 cut(s) 280
TaiI ACGT 2 cut(s) 63, 628
TaqI TCGA 1 cut(s) 10
TasI AATT 5 cut(s) 234, 387, 394, 433, 457
TatI WGTACW 2 cut(s) 51, 127
TfiI GAWTC 1 cut(s) 417
Tru1I TTAA 2 cut(s) 402, 455
Tru9I TTAA 2 cut(s) 402, 455
TscAI CASTG 2 cut(s) 31, 40
TspDTI ATGAA 4 cut(s) 516, 555, 561, 654
TspGWI ACGGA 1 cut(s) 266
TspRI CASTG 2 cut(s) 31, 40
Van91I CCANNNNNTGG 1 cut(s) 179
XapI RAATTY 1 cut(s) 457
XcmI CCANNNNNNNNNTGG 1 cut(s) 393
XmiI GTMKAC 1 cut(s) 114
Zsp2I ATGCAT 2 cut(s) 154, 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.