MD09G1223900.v1.1

deSI-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0012076
Physical Location & Seq
Reverse (-)
26628916 .. 26631497
2582 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1223900.v1.1.491

Sequence Viewer

Length: 693 bp
ATGTTGTGTAAAAAGAGTGTGTGCAGAAGTGCCATTGAGGAGGAGGAGGAGGACAGTGGATCGGTGCCTGTGTACCTCAATGTATACGATCTCTCACCTTTTAATGGCTACGCTTATTGGCTTGGCCTTGGAGTTTACCATTCTGGTGTACAAGTGCATGGTGTGGAGTATGCATTTGGAGCTCACGAGTATCCAACATCTGGAATTTTTGAAGGAGAACCGAAAAAGTGTGATGGGTTTACATTTAGGAAATCGATTCTGGTCGGGAAGACGATTGTTGGGCCTTTAGAAGTGAGGGCAGTGTGGGAAGGTCTTGCAGCGAAATACAAAGGAAATGCCTACAATTTGGTCACCAAGAACTGCAACCATTTCTGCAATGATGCATGTATCACATTGACTGGAAATCCAATTCCAAGTTGGGTTAATCGGCTTGCTAGAATCGGCTTCCTCTGCAATTGTGTTCTTCCAGTGACTTTAAAAAATTTGGCCAAAGTTCATAGAATCGAAGATAAGGCCGATGACGGAGATAAGAACAAGTTAACAAGCCAGTCAAACAATGTGGCAATATCTTCTAATTCTCCTTCATCTTCACCATCCTCTCCTTCTGGCACTACATTGCGCAGGGGTAGAAGCAGAACAAGACGCCCACGTCCTCCCTCTTCGCCTTTGATTATTGCTTCTTCATCCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

231

Amino Acids

25.05

Weight (kDa)

8.99

Isoelectric Point (pI)

59.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C97 PF05903 23 - 157 2.8e-49 PPPDE putative peptidase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012076)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80690 AT1G80690
fragaria_vesca FvH4_6g28860
malus_domestica MD09G1223900.v1.1 MD17G1220800.v1.1
prunus_persica Prupe.3G096200_v2.0.a1
pyrus_communis pycom17g22540
rosa_chinensis RchiOBHm_Chr2g0133411
rosa_laevigata RLG00000019329
rosa_multiflora Rmu_sc0003874.1_g000005
rosa_roxburghii Rroxscaffold_2G00111190
rosa_rugosa Rorug02G0311500 Rorug02G0311600 Rorug02G0311700
rosa_samantha Rh2AG364000 Rh2BG369900 Rh2CG347300 Rh2DG386800
rosa_wichuraiana Rw2G029650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 648
Acc16I TGCGCA 1 cut(s) 620
AccB1I GGYRCC 1 cut(s) 64
AccB7I CCANNNNNTGG 1 cut(s) 200
AccI GTMKAC 1 cut(s) 84
AclWI GGATC 1 cut(s) 67
AcoI YGGCCR 1 cut(s) 486
AcsI RAATTY 2 cut(s) 204, 481
AcyI GRCGYC 1 cut(s) 643
AfaI GTAC 2 cut(s) 74, 150
AfiI CCNNNNNNNGG 2 cut(s) 104, 200
AgsI TTSAA 1 cut(s) 212
AjiI CACGTC 1 cut(s) 650
AluBI AGCT 1 cut(s) 182
AluI AGCT 1 cut(s) 182
Alw21I GWGCWC 1 cut(s) 184
AlwI GGATC 1 cut(s) 67
AoxI GGCC 4 cut(s) 124, 281, 486, 513
ApeKI GCWGC 1 cut(s) 317
ApoI RAATTY 2 cut(s) 204, 481
AspLEI GCGC 1 cut(s) 621
AspS9I GGNCC 1 cut(s) 281
AsuHPI GGTGA 3 cut(s) 87, 343, 582
BalI TGGCCA 1 cut(s) 488
BanI GGYRCC 1 cut(s) 64
BanII GRGCYC 1 cut(s) 184
BauI CACGAG 1 cut(s) 185
BbsI GAAGAC 1 cut(s) 275
Bbv12I GWGCWC 1 cut(s) 184
BbvI GCAGC 1 cut(s) 329
BccI CCATC 2 cut(s) 227, 601
BciVI GTATCC 1 cut(s) 201
BfaI CTAG 1 cut(s) 435
BfuI GTATCC 1 cut(s) 201
BisI GCNGC 1 cut(s) 318
BlsI GCNGC 1 cut(s) 319
BmgBI CACGTC 1 cut(s) 650
BmgT120I GGNCC 1 cut(s) 281
BmiI GGNNCC 1 cut(s) 66
BmsI GCATC 1 cut(s) 370
BpiI GAAGAC 1 cut(s) 275
Bsa29I ATCGAT 1 cut(s) 254
BsaHI GRCGYC 1 cut(s) 643
BsaJI CCNNGG 1 cut(s) 127
Bsc4I CCNNNNNNNGG 2 cut(s) 104, 200
Bse1I ACTGG 3 cut(s) 403, 467, 547
Bse3DI GCAATG 2 cut(s) 382, 614
BseCI ATCGAT 1 cut(s) 254
BseDI CCNNGG 1 cut(s) 127
BseGI GGATG 2 cut(s) 593, 683
BseLI CCNNNNNNNGG 2 cut(s) 104, 200
BseMI GCAATG 2 cut(s) 382, 614
BseNI ACTGG 3 cut(s) 403, 467, 547
BseRI GAGGAG 4 cut(s) 53, 56, 59, 62
BseXI GCAGC 1 cut(s) 329
BsgI GTGCAG 1 cut(s) 43
BshFI GGCC 4 cut(s) 126, 283, 488, 515
BshNI GGYRCC 1 cut(s) 64
BshVI ATCGAT 1 cut(s) 254
BsiHKAI GWGCWC 1 cut(s) 184
BslI CCNNNNNNNGG 2 cut(s) 104, 200
BsnI GGCC 4 cut(s) 126, 283, 488, 515
Bsp1286I GDGCHC 1 cut(s) 184
Bsp1407I TGTACA 1 cut(s) 148
Bsp143I GATC 2 cut(s) 59, 88
BspANI GGCC 4 cut(s) 126, 283, 488, 515
BspDI ATCGAT 1 cut(s) 254
BspLI GGNNCC 1 cut(s) 66
BspPI GGATC 1 cut(s) 67
BspT107I GGYRCC 1 cut(s) 64
BsrDI GCAATG 2 cut(s) 382, 614
BsrGI TGTACA 1 cut(s) 148
BsrI ACTGG 3 cut(s) 403, 467, 547
BssECI CCNNGG 1 cut(s) 127
BssMI GATC 2 cut(s) 59, 88
BssNAI GTATAC 1 cut(s) 85
BssNI GRCGYC 1 cut(s) 643
BssSI CACGAG 1 cut(s) 185
BssT1I CCWWGG 1 cut(s) 127
Bst1107I GTATAC 1 cut(s) 85
Bst2BI CACGAG 1 cut(s) 185
Bst4CI ACNGT 1 cut(s) 56
Bst6I CTCTTC 1 cut(s) 664
BstACI GRCGYC 1 cut(s) 643
BstAUI TGTACA 1 cut(s) 148
BstC8I GCNNGC 1 cut(s) 432
BstEII GGTNACC 1 cut(s) 349
BstF5I GGATG 2 cut(s) 593, 683
BstHHI GCGC 1 cut(s) 621
BstKTI GATC 2 cut(s) 62, 91
BstMBI GATC 2 cut(s) 59, 88
BstMWI GCNNNNNNNGC 2 cut(s) 179, 450
BstNSI RCATGY 1 cut(s) 387
BstPI GGTNACC 1 cut(s) 349
BstV1I GCAGC 1 cut(s) 329
BstV2I GAAGAC 1 cut(s) 275
BstZ17I GTATAC 1 cut(s) 85
Bsu15I ATCGAT 1 cut(s) 254
BsuI GTATCC 1 cut(s) 201
BsuRI GGCC 4 cut(s) 126, 283, 488, 515
BsuTUI ATCGAT 1 cut(s) 254
BtrI CACGTC 1 cut(s) 650
BtsCI GGATG 2 cut(s) 593, 683
BtsI GCAGTG 1 cut(s) 306
BtsIMutI CAGTG 3 cut(s) 61, 306, 474
Cac8I GCNNGC 1 cut(s) 432
CfoI GCGC 1 cut(s) 621
Cfr13I GGNCC 1 cut(s) 281
ClaI ATCGAT 1 cut(s) 254
CseI GACGC 1 cut(s) 651
Csp6I GTAC 2 cut(s) 73, 149
CspCI CAANNNNNGTGG 2 cut(s) 540, 575
CviAII CATG 2 cut(s) 158, 384
CviQI GTAC 2 cut(s) 73, 149
DpnI GATC 2 cut(s) 61, 90
DpnII GATC 2 cut(s) 59, 88
DraI TTTAAA 1 cut(s) 477
DrdI GACNNNNNNGTC 1 cut(s) 648
DseDI GACNNNNNNGTC 1 cut(s) 648
EaeI YGGCCR 1 cut(s) 486
Eam1104I CTCTTC 1 cut(s) 664
EarI CTCTTC 1 cut(s) 664
Ecl136II GAGCTC 1 cut(s) 182
Eco130I CCWWGG 1 cut(s) 127
Eco24I GRGCYC 1 cut(s) 184
Eco53kI GAGCTC 1 cut(s) 182
Eco91I GGTNACC 1 cut(s) 349
EcoICRI GAGCTC 1 cut(s) 182
EcoO65I GGTNACC 1 cut(s) 349
EcoT14I CCWWGG 1 cut(s) 127
EcoT22I ATGCAT 2 cut(s) 175, 385
EcoT38I GRGCYC 1 cut(s) 184
ErhI CCWWGG 1 cut(s) 127
FaeI CATG 2 cut(s) 161, 387
FaiI YATR 5 cut(s) 85, 159, 171, 385, 498
FatI CATG 2 cut(s) 157, 383
FblI GTMKAC 1 cut(s) 84
Fnu4HI GCNGC 1 cut(s) 318
FokI GGATG 2 cut(s) 580, 670
FriOI GRGCYC 1 cut(s) 184
Fsp4HI GCNGC 1 cut(s) 318
FspBI CTAG 1 cut(s) 435
FspI TGCGCA 1 cut(s) 620
GlaI GCGC 1 cut(s) 620
GluI GCNGC 1 cut(s) 318
HaeIII GGCC 4 cut(s) 126, 283, 488, 515
HgaI GACGC 1 cut(s) 651
HhaI GCGC 1 cut(s) 621
Hin1I GRCGYC 1 cut(s) 643
Hin1II CATG 2 cut(s) 161, 387
Hin6I GCGC 1 cut(s) 619
HinP1I GCGC 1 cut(s) 619
HincII GTYRAC 1 cut(s) 540
HindII GTYRAC 1 cut(s) 540
HinfI GANTC 3 cut(s) 256, 438, 501
HpaI GTTAAC 1 cut(s) 540
HphI GGTGA 3 cut(s) 87, 343, 582
Hpy166II GTNNAC 6 cut(s) 73, 85, 136, 149, 240, 540
Hpy188III TCNNGA 4 cut(s) 185, 201, 265, 690
Hpy8I GTNNAC 6 cut(s) 73, 85, 136, 149, 240, 540
HpyAV CCTTC 4 cut(s) 206, 302, 591, 612
HpyCH4III ACNGT 1 cut(s) 56
HpyCH4IV ACGT 1 cut(s) 649
HpyCH4V TGCA 8 cut(s) 24, 157, 173, 317, 363, 375, 383, 453
HpyF10VI GCNNNNNNNGC 2 cut(s) 179, 450
HpySE526I ACGT 1 cut(s) 649
Hsp92I GRCGYC 1 cut(s) 643
Hsp92II CATG 2 cut(s) 161, 387
HspAI GCGC 1 cut(s) 619
KspAI GTTAAC 1 cut(s) 540
Kzo9I GATC 2 cut(s) 59, 88
LmnI GCTCC 1 cut(s) 179
LpnPI CCDG 9 cut(s) 81, 129, 186, 245, 384, 480, 560, 591, 607
Lsp1109I GCAGC 1 cut(s) 329
LweI GCATC 1 cut(s) 370
MaeI CTAG 1 cut(s) 435
MaeII ACGT 1 cut(s) 649
MaeIII GTNAC 2 cut(s) 349, 469
MalI GATC 2 cut(s) 61, 90
MboI GATC 2 cut(s) 59, 88
MboII GAAGA 7 cut(s) 280, 455, 518, 561, 579, 651, 672
MfeI CAATTG 1 cut(s) 454
MhlI GDGCHC 1 cut(s) 184
MlsI TGGCCA 1 cut(s) 488
MluCI AATT 6 cut(s) 204, 343, 408, 454, 481, 574
MluNI TGGCCA 1 cut(s) 488
MmeI TCCRAC 1 cut(s) 218
Mox20I TGGCCA 1 cut(s) 488
Mph1103I ATGCAT 2 cut(s) 175, 385
MscI TGGCCA 1 cut(s) 488
MseI TTAA 4 cut(s) 102, 423, 476, 539
MslI CAYNNNNRTG 1 cut(s) 144
Msp20I TGGCCA 1 cut(s) 488
MunI CAATTG 1 cut(s) 454
MwoI GCNNNNNNNGC 2 cut(s) 179, 450
NdeII GATC 2 cut(s) 59, 88
NlaIII CATG 2 cut(s) 161, 387
NlaIV GGNNCC 1 cut(s) 66
NmuCI GTSAC 2 cut(s) 349, 469
NsbI TGCGCA 1 cut(s) 620
NsiI ATGCAT 2 cut(s) 175, 385
NspI RCATGY 1 cut(s) 387
PfeI GAWTC 3 cut(s) 256, 438, 501
PflMI CCANNNNNTGG 1 cut(s) 200
PkrI GCNGC 1 cut(s) 319
Psp124BI GAGCTC 1 cut(s) 184
PspEI GGTNACC 1 cut(s) 349
PspN4I GGNNCC 1 cut(s) 66
PspPI GGNCC 1 cut(s) 281
RsaI GTAC 2 cut(s) 74, 150
RsaNI GTAC 2 cut(s) 73, 149
RseI CAYNNNNRTG 1 cut(s) 144
SacI GAGCTC 1 cut(s) 184
SaqAI TTAA 4 cut(s) 102, 423, 476, 539
SatI GCNGC 1 cut(s) 318
Sau3AI GATC 2 cut(s) 59, 88
Sau96I GGNCC 1 cut(s) 281
SduI GDGCHC 1 cut(s) 184
SetI ASST 5 cut(s) 78, 100, 184, 313, 652
SfaNI GCATC 1 cut(s) 370
SmiMI CAYNNNNRTG 1 cut(s) 144
Sse9I AATT 6 cut(s) 204, 343, 408, 454, 481, 574
SspMI CTAG 1 cut(s) 435
SstI GAGCTC 1 cut(s) 184
StyI CCWWGG 1 cut(s) 127
TaaI ACNGT 1 cut(s) 56
TaiI ACGT 1 cut(s) 652
TaqI TCGA 2 cut(s) 254, 504
TasI AATT 6 cut(s) 204, 343, 408, 454, 481, 574
TatI WGTACW 1 cut(s) 148
TfiI GAWTC 3 cut(s) 256, 438, 501
Tru1I TTAA 4 cut(s) 102, 423, 476, 539
Tru9I TTAA 4 cut(s) 102, 423, 476, 539
TscAI CASTG 3 cut(s) 61, 306, 474
TseFI GTSAC 2 cut(s) 349, 469
TseI GCWGC 1 cut(s) 317
Tsp45I GTSAC 2 cut(s) 349, 469
TspDTI ATGAA 3 cut(s) 485, 573, 672
TspGWI ACGGA 1 cut(s) 537
TspRI CASTG 3 cut(s) 61, 306, 474
Van91I CCANNNNNTGG 1 cut(s) 200
XapI RAATTY 2 cut(s) 204, 481
XceI RCATGY 1 cut(s) 387
XcmI CCANNNNNNNNNTGG 1 cut(s) 414
XmiI GTMKAC 1 cut(s) 84
XspI CTAG 1 cut(s) 435
Zsp2I ATGCAT 2 cut(s) 175, 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.