Rorug02G0311500

Mitochondrial glycoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0007719
Physical Location & Seq
Reverse (-)
37439245 .. 37449387
10143 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0311500.1

Sequence Viewer

Length: 723 bp
ATGGCCAACCCTTCTGGGAACCATCAAGAACCGAGCCATGCCTCGTCGTCTTTCAACGGCACCAACCCGACTAACGGAAACTCCACTCCTGTGTCGGCACCCGAGACCATGGCCATGAAGCACAACCCGGGTATTTCTATGGATTGGACCGCAGAGGAGCAGGCCATTCTTGATGATGGGCTCGCCAATTATGCAACAGAAGCTAACATAATCCGGTATGCGAAGATAGCTATGCAGCTACAGAATAAGACGGTTCGAGATGTGGCATTGCGTTGCAGATGGATGACTAAAAAGGAGAACAGCAAGAGAAGGAAGGAAGAGCATAACTTAGCAAGGAAAAGCAAAGACAAAAAGGAAAGAGTAGTTGATACTTCAGCAAAGCCGTCACACTTTACAAACCGACCCAGTGTTGCTCCCTATACTCCTCCGATAATATCTATGGACAATGATGATGGCATCTCATACAAAGCTATTGGTGGGGTTACAGGCGAGCTTTTGGAGCAGAATGCGCAAGCCTTGAATCAAATTTCTACCAATCTTCAAGCTTTCCAGATACAGGAGAACATCAACCTCTTCTGCCAGGCTCGAGATAACATCCTCAAAATAATGAATGACTTGAATGACATGCCAGACGTAATGAAGCAGATGCCACCACTTCCAGTGAAAGTAAATGAAGAGCTCGTAAACCACGTCCTCCCCCCACCTGCACATCAAATGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko05168 map05168
Pfam Domains
Protein Families
MAM33

Protein Analysis

240

Amino Acids

26.75

Weight (kDa)

6.66

Isoelectric Point (pI)

48.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3755 PF12579 182 - 215 6e-19 Protein of unknown function (DUF3755)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 712
Acc16I TGCGCA 1 cut(s) 510
Acc36I ACCTGC 1 cut(s) 712
AccB1I GGYRCC 2 cut(s) 59, 97
AciI CCGC 1 cut(s) 150
AcoI YGGCCR 2 cut(s) 3, 111
AcsI RAATTY 1 cut(s) 525
AcuI CTGAAG 1 cut(s) 357
AfiI CCNNNNNNNGG 2 cut(s) 74, 556
AgsI TTSAA 4 cut(s) 55, 520, 542, 619
AjiI CACGTC 1 cut(s) 691
AjnI CCWGG 1 cut(s) 579
AleI CACNNNNGTG 1 cut(s) 89
AluBI AGCT 7 cut(s) 203, 230, 238, 470, 493, 545, 679
AluI AGCT 7 cut(s) 203, 230, 238, 470, 493, 545, 679
Alw21I GWGCWC 1 cut(s) 681
Alw26I GTCTC 1 cut(s) 98
Ama87I CYCGRG 3 cut(s) 101, 127, 585
AoxI GGCC 3 cut(s) 3, 111, 162
ApeKI GCWGC 1 cut(s) 235
ApoI RAATTY 1 cut(s) 525
AspLEI GCGC 1 cut(s) 511
AspS9I GGNCC 1 cut(s) 147
AsuC2I CCSGG 2 cut(s) 128, 129
AvaI CYCGRG 3 cut(s) 101, 127, 585
AvaII GGWCC 1 cut(s) 147
BalI TGGCCA 2 cut(s) 5, 113
BanI GGYRCC 2 cut(s) 59, 97
BanII GRGCYC 2 cut(s) 183, 681
Bbv12I GWGCWC 1 cut(s) 681
BbvI GCAGC 1 cut(s) 247
BccI CCATC 4 cut(s) 30, 170, 273, 446
BceAI ACGGC 2 cut(s) 73, 367
BciT130I CCWGG 1 cut(s) 581
BcnI CCSGG 2 cut(s) 128, 129
BcoDI GTCTC 1 cut(s) 98
BfmI CTRYAG 1 cut(s) 239
BfuAI ACCTGC 1 cut(s) 712
BisI GCNGC 1 cut(s) 236
BlsI GCNGC 1 cut(s) 237
Bme1390I CCNGG 3 cut(s) 128, 129, 581
Bme18I GGWCC 1 cut(s) 147
BmeT110I CYCGRG 3 cut(s) 101, 127, 585
BmgBI CACGTC 1 cut(s) 691
BmgT120I GGNCC 1 cut(s) 147
BmiI GGNNCC 3 cut(s) 20, 61, 99
BmrFI CCNGG 3 cut(s) 128, 129, 581
BmrI ACTGGG 1 cut(s) 399
BmsI GCATC 2 cut(s) 465, 636
BmuI ACTGGG 1 cut(s) 399
BpuMI CCSGG 2 cut(s) 128, 129
BsaI GGTCTC 1 cut(s) 98
BsaJI CCNNGG 2 cut(s) 108, 127
BsaWI WCCGGW 1 cut(s) 213
BsaXI ACNNNNNCTCC 2 cut(s) 65, 95
Bsc4I CCNNNNNNNGG 2 cut(s) 74, 556
Bse1I ACTGG 2 cut(s) 405, 659
Bse3DI GCAATG 1 cut(s) 266
BseBI CCWGG 1 cut(s) 581
BseDI CCNNGG 2 cut(s) 108, 127
BseGI GGATG 2 cut(s) 288, 594
BseLI CCNNNNNNNGG 2 cut(s) 74, 556
BseMI GCAATG 1 cut(s) 266
BseNI ACTGG 2 cut(s) 405, 659
BseRI GAGGAG 2 cut(s) 170, 414
BseXI GCAGC 1 cut(s) 247
BsgI GTGCAG 1 cut(s) 690
BshFI GGCC 3 cut(s) 5, 113, 164
BshNI GGYRCC 2 cut(s) 59, 97
BsiHKAI GWGCWC 1 cut(s) 681
BsiHKCI CYCGRG 3 cut(s) 101, 127, 585
BsiSI CCGG 2 cut(s) 128, 214
BslI CCNNNNNNNGG 2 cut(s) 74, 556
BsmAI GTCTC 1 cut(s) 98
BsmI GAATGC 1 cut(s) 511
BsnI GGCC 3 cut(s) 5, 113, 164
Bso31I GGTCTC 1 cut(s) 98
BsoBI CYCGRG 3 cut(s) 101, 127, 585
Bsp1286I GDGCHC 2 cut(s) 183, 681
Bsp19I CCATGG 1 cut(s) 108
BspACI CCGC 1 cut(s) 150
BspANI GGCC 3 cut(s) 5, 113, 164
BspLI GGNNCC 3 cut(s) 20, 61, 99
BspMI ACCTGC 1 cut(s) 712
BspQI GCTCTTC 2 cut(s) 312, 669
BspT107I GGYRCC 2 cut(s) 59, 97
BspTNI GGTCTC 1 cut(s) 98
BsrDI GCAATG 1 cut(s) 266
BsrI ACTGG 2 cut(s) 405, 659
BssECI CCNNGG 2 cut(s) 108, 127
BssT1I CCWWGG 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 581
Bst4CI ACNGT 1 cut(s) 253
Bst6I CTCTTC 3 cut(s) 312, 578, 669
BstC8I GCNNGC 4 cut(s) 162, 183, 491, 513
BstDEI CTNAG 1 cut(s) 328
BstDSI CCRYGG 1 cut(s) 108
BstF5I GGATG 2 cut(s) 288, 594
BstHHI GCGC 1 cut(s) 511
BstMAI GTCTC 1 cut(s) 98
BstMWI GCNNNNNNNGC 5 cut(s) 191, 200, 227, 499, 508
BstNI CCWGG 1 cut(s) 581
BstNSI RCATGY 1 cut(s) 628
BstSCI CCNGG 3 cut(s) 126, 127, 579
BstSFI CTRYAG 1 cut(s) 239
BstV1I GCAGC 1 cut(s) 247
BsuRI GGCC 3 cut(s) 5, 113, 164
BtgI CCRYGG 1 cut(s) 108
BtrI CACGTC 1 cut(s) 691
BtsCI GGATG 2 cut(s) 288, 594
BtsIMutI CAGTG 2 cut(s) 412, 666
BveI ACCTGC 1 cut(s) 712
Cac8I GCNNGC 4 cut(s) 162, 183, 491, 513
CfoI GCGC 1 cut(s) 511
Cfr13I GGNCC 1 cut(s) 147
Cfr9I CCCGGG 1 cut(s) 127
CviAII CATG 4 cut(s) 38, 109, 115, 625
DdeI CTNAG 1 cut(s) 328
EaeI YGGCCR 2 cut(s) 3, 111
Eam1104I CTCTTC 3 cut(s) 312, 578, 669
EarI CTCTTC 3 cut(s) 312, 578, 669
Ecl136II GAGCTC 1 cut(s) 679
Eco130I CCWWGG 1 cut(s) 108
Eco24I GRGCYC 2 cut(s) 183, 681
Eco31I GGTCTC 1 cut(s) 98
Eco47I GGWCC 1 cut(s) 147
Eco53kI GAGCTC 1 cut(s) 679
Eco57I CTGAAG 1 cut(s) 357
Eco88I CYCGRG 3 cut(s) 101, 127, 585
EcoICRI GAGCTC 1 cut(s) 679
EcoRII CCWGG 1 cut(s) 579
EcoT14I CCWWGG 1 cut(s) 108
EcoT38I GRGCYC 2 cut(s) 183, 681
ErhI CCWWGG 1 cut(s) 108
FaeI CATG 4 cut(s) 41, 112, 118, 628
FatI CATG 4 cut(s) 37, 108, 114, 624
Fnu4HI GCNGC 1 cut(s) 236
FokI GGATG 2 cut(s) 295, 581
FriOI GRGCYC 2 cut(s) 183, 681
Fsp4HI GCNGC 1 cut(s) 236
FspI TGCGCA 1 cut(s) 510
GlaI GCGC 1 cut(s) 510
GluI GCNGC 1 cut(s) 236
HaeIII GGCC 3 cut(s) 5, 113, 164
HapII CCGG 2 cut(s) 128, 214
HhaI GCGC 1 cut(s) 511
Hin1II CATG 4 cut(s) 41, 112, 118, 628
Hin6I GCGC 1 cut(s) 509
HinP1I GCGC 1 cut(s) 509
HindIII AAGCTT 1 cut(s) 543
HinfI GANTC 1 cut(s) 520
HpaII CCGG 2 cut(s) 128, 214
Hpy166II GTNNAC 1 cut(s) 685
Hpy188I TCNGA 1 cut(s) 429
Hpy188III TCNNGA 5 cut(s) 26, 170, 257, 550, 587
Hpy8I GTNNAC 1 cut(s) 685
Hpy99I CGWCG 1 cut(s) 49
HpyAV CCTTC 3 cut(s) 21, 303, 307
HpyCH4III ACNGT 1 cut(s) 253
HpyCH4IV ACGT 2 cut(s) 633, 690
HpyCH4V TGCA 5 cut(s) 194, 235, 276, 707, 718
HpyF10VI GCNNNNNNNGC 5 cut(s) 191, 200, 227, 499, 508
HpyF3I CTNAG 1 cut(s) 328
HpySE526I ACGT 2 cut(s) 633, 690
Hsp92II CATG 4 cut(s) 41, 112, 118, 628
HspAI GCGC 1 cut(s) 509
LguI GCTCTTC 2 cut(s) 312, 669
LmnI GCTCC 3 cut(s) 157, 418, 499
Lsp1109I GCAGC 1 cut(s) 247
LweI GCATC 2 cut(s) 465, 636
MaeII ACGT 2 cut(s) 633, 690
MaeIII GTNAC 2 cut(s) 384, 481
MboII GAAGA 5 cut(s) 235, 329, 530, 565, 686
MhlI GDGCHC 2 cut(s) 183, 681
MlsI TGGCCA 2 cut(s) 5, 113
MluCI AATT 2 cut(s) 187, 525
MluNI TGGCCA 2 cut(s) 5, 113
MnlI CCTC 6 cut(s) 52, 148, 435, 581, 608, 704
Mox20I TGGCCA 2 cut(s) 5, 113
MscI TGGCCA 2 cut(s) 5, 113
MslI CAYNNNNRTG 2 cut(s) 89, 113
Msp20I TGGCCA 2 cut(s) 5, 113
MspI CCGG 2 cut(s) 128, 214
MspR9I CCNGG 3 cut(s) 128, 129, 581
Mva1269I GAATGC 1 cut(s) 511
MvaI CCWGG 1 cut(s) 581
MwoI GCNNNNNNNGC 5 cut(s) 191, 200, 227, 499, 508
NciI CCSGG 2 cut(s) 128, 129
NcoI CCATGG 1 cut(s) 108
NlaIII CATG 4 cut(s) 41, 112, 118, 628
NlaIV GGNNCC 3 cut(s) 20, 61, 99
NmuCI GTSAC 1 cut(s) 384
NsbI TGCGCA 1 cut(s) 510
NspI RCATGY 1 cut(s) 628
OliI CACNNNNGTG 1 cut(s) 89
PaeR7I CTCGAG 1 cut(s) 585
PaqCI CACCTGC 1 cut(s) 712
PciSI GCTCTTC 2 cut(s) 312, 669
PcsI WCGNNNNNNNCGW 1 cut(s) 687
PctI GAATGC 1 cut(s) 511
PfeI GAWTC 1 cut(s) 520
PkrI GCNGC 1 cut(s) 237
Psp124BI GAGCTC 1 cut(s) 681
Psp6I CCWGG 1 cut(s) 579
PspGI CCWGG 1 cut(s) 579
PspN4I GGNNCC 3 cut(s) 20, 61, 99
PspPI GGNCC 1 cut(s) 147
RseI CAYNNNNRTG 2 cut(s) 89, 113
SacI GAGCTC 1 cut(s) 681
SapI GCTCTTC 2 cut(s) 312, 669
SatI GCNGC 1 cut(s) 236
Sau96I GGNCC 1 cut(s) 147
ScrFI CCNGG 3 cut(s) 128, 129, 581
SduI GDGCHC 2 cut(s) 183, 681
SfaNI GCATC 2 cut(s) 465, 636
SfcI CTRYAG 1 cut(s) 239
Sfr274I CTCGAG 1 cut(s) 585
SinI GGWCC 1 cut(s) 147
SlaI CTCGAG 1 cut(s) 585
SmaI CCCGGG 1 cut(s) 129
SmiMI CAYNNNNRTG 2 cut(s) 89, 113
SmlI CTYRAG 1 cut(s) 585
SmoI CTYRAG 1 cut(s) 585
Sse9I AATT 2 cut(s) 187, 525
SsiI CCGC 1 cut(s) 150
SstI GAGCTC 1 cut(s) 681
StyD4I CCNGG 3 cut(s) 126, 127, 579
StyI CCWWGG 1 cut(s) 108
TaaI ACNGT 1 cut(s) 253
TaiI ACGT 2 cut(s) 636, 693
TaqI TCGA 2 cut(s) 256, 586
TasI AATT 2 cut(s) 187, 525
TfiI GAWTC 1 cut(s) 520
TscAI CASTG 2 cut(s) 412, 666
TseFI GTSAC 1 cut(s) 384
TseI GCWGC 1 cut(s) 235
Tsp45I GTSAC 1 cut(s) 384
TspDTI ATGAA 4 cut(s) 131, 623, 653, 687
TspGWI ACGGA 1 cut(s) 90
TspMI CCCGGG 1 cut(s) 127
TspRI CASTG 2 cut(s) 412, 666
VpaK11BI GGWCC 1 cut(s) 147
XapI RAATTY 1 cut(s) 525
XceI RCATGY 1 cut(s) 628
XhoI CTCGAG 1 cut(s) 585
XmaI CCCGGG 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.