Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0007719

Physical Location & Seq

Genomic Coordinates Forward (+)

7259459 .. 7262897

Gene Structure 3439 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G096300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGCACGGCTAATCAGACCCTTAAGAAAATGCATTCTTTCTCCTCTGTCTTCTTCTTCTTCTTCCAAAATCCTAGCTCAGCAAATACCCACTTTGCATTTTGCACATGAAGAACAAGTCTCCCTCTTAAACCCCAAGCTCCTCCCACCACAATGCCTTAGAACTTACATCTCTGAAATGCGCAAATCGGCCTTCGAAGGCCACGTTCTCAGACTGTTACGCAATGAAATACAATATGAACTCGATCGCTCTACTCCTAATCAGCCAGTCACAAAATTCAAATCATTTACAGTTAACGACCGTCCTGGTGAGCAATGGATAAGCTTGAGGAGAAAATTTGAAGAGAATGAAGACATAAAGATTGAAGCCACCATGTTTGATGGAGCTGTTCCTGCTCCAAAATCTAGTGGCCTTGGCAAAGAAGTGCAGCTTCACATTACCATGATTGTCAATATCTCCAAGAAGGAAGGTGGTAATGTGTTGGAGATTATGTGCTCAGTTTGGCCAGATACTATAGAGATCAACAAGCTATTCGTCCGAGAGCCTGATAACATGCCAGCTCAGGCTTATGTGGGTCCTGAGTTCAAGGAACTTGATGATGAGTTGCAAGACGCACTTTATGAATTCTCGGAAGCAAGGGGTATAAATGATGATCTTGCTGTTTTCTTGCATGAATACATGAAGAACAAAGATAAAACTGAGTTCATTAGATGGATGGGAACTGTGAAATCAGTTATTGAAAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko05168 map05168

Pfam Domains

Protein Families

MAM33

Protein Analysis

250

Amino Acids

28.62

Weight (kDa)

6.26

Isoelectric Point (pI)

56.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15870 AT1G80720 AT1G80720
fragaria_vesca	FvH4_6g28850 FvH4_6g28850
malus_domestica	MD17G1221200.v1.1
prunus_persica	Prupe.3G096300_v2.0.a1 Prupe.3G096300_v2.0.a1
pyrus_communis	pycom09g14170 pycom17g22560
rosa_chinensis	RchiOBHm_Chr2g0133381
rosa_laevigata	RLG00000019328
rosa_multiflora	Rmu_sc0003874.1_g000009 Rmu_sc0006616.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111210
rosa_rugosa	Rorug02G0311200 Rorug02G0311300 Rorug02G0311400.1 Rorug02G0311500
rosa_samantha	Rh2AG363900 Rh2BG369800 Rh2CG347100 Rh2DG386600
rosa_wichuraiana	Rw2G029620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	182
AcoI	YGGCCR	1 cut(s)	503
AcsI	RAATTY	3 cut(s)	275, 335, 623
AflII	CTTAAG	1 cut(s)	22
AgsI	TTSAA	5 cut(s)	280, 341, 365, 586, 740
AjnI	CCWGG	1 cut(s)	304
AluBI	AGCT	7 cut(s)	77, 139, 324, 386, 430, 529, 560
AluI	AGCT	7 cut(s)	77, 139, 324, 386, 430, 529, 560
Alw21I	GWGCWC	1 cut(s)	497
Alw26I	GTCTC	1 cut(s)	124
AoxI	GGCC	4 cut(s)	189, 199, 409, 503
ApeKI	GCWGC	1 cut(s)	427
ApoI	RAATTY	3 cut(s)	275, 335, 623
AspLEI	GCGC	1 cut(s)	183
AspS9I	GGNCC	1 cut(s)	575
AsuHPI	GGTGA	1 cut(s)	320
AsuII	TTCGAA	1 cut(s)	195
AvaII	GGWCC	1 cut(s)	575
BalI	TGGCCA	1 cut(s)	505
BbsI	GAAGAC	2 cut(s)	42, 357
Bbv12I	GWGCWC	1 cut(s)	497
BbvI	GCAGC	1 cut(s)	439
BccI	CCATC	3 cut(s)	374, 705, 709
BceAI	ACGGC	1 cut(s)	23
BciT130I	CCWGG	1 cut(s)	306
BcoDI	GTCTC	1 cut(s)	124
BfaI	CTAG	2 cut(s)	74, 405
BfmI	CTRYAG	1 cut(s)	513
BfrI	CTTAAG	1 cut(s)	22
BisI	GCNGC	1 cut(s)	428
BlpI	GCTNAGC	1 cut(s)	78
BlsI	GCNGC	1 cut(s)	429
Bme1390I	CCNGG	1 cut(s)	306
Bme18I	GGWCC	1 cut(s)	575
BmgT120I	GGNCC	1 cut(s)	575
BmiI	GGNNCC	1 cut(s)	576
BmrFI	CCNGG	1 cut(s)	306
BpiI	GAAGAC	2 cut(s)	42, 357
Bpu10I	CCTNAGC	1 cut(s)	561
Bpu1102I	GCTNAGC	1 cut(s)	78
Bpu14I	TTCGAA	1 cut(s)	195
BpuEI	CTTGAG	1 cut(s)	346
BsaJI	CCNNGG	1 cut(s)	412
BsaXI	ACNNNNNCTCC	2 cut(s)	476, 506
Bse1I	ACTGG	1 cut(s)	266
Bse3DI	GCAATG	2 cut(s)	229, 320
BseBI	CCWGG	1 cut(s)	306
BseDI	CCNNGG	1 cut(s)	412
BseGI	GGATG	1 cut(s)	720
BseMI	GCAATG	2 cut(s)	229, 320
BseMII	CTCAG	6 cut(s)	92, 223, 510, 570, 575, 690
BseNI	ACTGG	1 cut(s)	266
BseRI	GAGGAG	3 cut(s)	33, 131, 343
BseXI	GCAGC	1 cut(s)	439
BsgI	GTGCAG	1 cut(s)	446
Bsh1285I	CGRYCG	2 cut(s)	247, 301
BshFI	GGCC	4 cut(s)	191, 201, 411, 505
BsiEI	CGRYCG	2 cut(s)	247, 301
BsiHKAI	GWGCWC	1 cut(s)	497
BsmAI	GTCTC	1 cut(s)	124
BsmI	GAATGC	1 cut(s)	33
BsnI	GGCC	4 cut(s)	191, 201, 411, 505
Bsp119I	TTCGAA	1 cut(s)	195
Bsp1286I	GDGCHC	1 cut(s)	497
Bsp143I	GATC	3 cut(s)	244, 519, 652
Bsp1720I	GCTNAGC	1 cut(s)	78
BspANI	GGCC	4 cut(s)	191, 201, 411, 505
BspCNI	CTCAG	6 cut(s)	91, 222, 509, 571, 574, 691
BspLI	GGNNCC	1 cut(s)	576
BspT104I	TTCGAA	1 cut(s)	195
BspTI	CTTAAG	1 cut(s)	22
BsrDI	GCAATG	2 cut(s)	229, 320
BsrI	ACTGG	1 cut(s)	266
BssECI	CCNNGG	1 cut(s)	412
BssMI	GATC	3 cut(s)	244, 519, 652
BssT1I	CCWWGG	1 cut(s)	412
Bst2UI	CCWGG	1 cut(s)	306
Bst4CI	ACNGT	4 cut(s)	216, 292, 302, 724
Bst6I	CTCTTC	1 cut(s)	336
BstAFI	CTTAAG	1 cut(s)	22
BstBI	TTCGAA	1 cut(s)	195
BstC8I	GCNNGC	1 cut(s)	558
BstDEI	CTNAG	7 cut(s)	78, 158, 209, 496, 561, 579, 699
BstF5I	GGATG	1 cut(s)	720
BstHHI	GCGC	1 cut(s)	183
BstKTI	GATC	3 cut(s)	247, 522, 655
BstMAI	GTCTC	1 cut(s)	124
BstMBI	GATC	3 cut(s)	244, 519, 652
BstMCI	CGRYCG	2 cut(s)	247, 301
BstMWI	GCNNNNNNNGC	1 cut(s)	392
BstNI	CCWGG	1 cut(s)	306
BstNSI	RCATGY	1 cut(s)	556
BstSCI	CCNGG	1 cut(s)	304
BstSFI	CTRYAG	1 cut(s)	513
BstV1I	GCAGC	1 cut(s)	439
BstV2I	GAAGAC	2 cut(s)	42, 357
BsuRI	GGCC	4 cut(s)	191, 201, 411, 505
BtsCI	GGATG	1 cut(s)	720
Cac8I	GCNNGC	1 cut(s)	558
CfoI	GCGC	1 cut(s)	183
Cfr13I	GGNCC	1 cut(s)	575
CseI	GACGC	1 cut(s)	620
CspCI	CAANNNNNGTGG	2 cut(s)	358, 393
CviAII	CATG	6 cut(s)	107, 373, 442, 553, 671, 679
DdeI	CTNAG	7 cut(s)	78, 158, 209, 496, 561, 579, 699
DpnI	GATC	3 cut(s)	246, 521, 654
DpnII	GATC	3 cut(s)	244, 519, 652
EaeI	YGGCCR	1 cut(s)	503
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
Eco130I	CCWWGG	1 cut(s)	412
Eco47I	GGWCC	1 cut(s)	575
EcoO109I	RGGNCCY	1 cut(s)	575
EcoRI	GAATTC	1 cut(s)	623
EcoRII	CCWGG	1 cut(s)	304
EcoT14I	CCWWGG	1 cut(s)	412
EcoT22I	ATGCAT	1 cut(s)	35
ErhI	CCWWGG	1 cut(s)	412
FaeI	CATG	6 cut(s)	110, 376, 445, 556, 674, 682
FalI	AAGNNNNNCTT	4 cut(s)	414, 446, 600, 632
FatI	CATG	6 cut(s)	106, 372, 441, 552, 670, 678
Fnu4HI	GCNGC	1 cut(s)	428
FokI	GGATG	1 cut(s)	727
Fsp4HI	GCNGC	1 cut(s)	428
FspBI	CTAG	2 cut(s)	74, 405
FspI	TGCGCA	1 cut(s)	182
GlaI	GCGC	1 cut(s)	182
GluI	GCNGC	1 cut(s)	428
HaeIII	GGCC	4 cut(s)	191, 201, 411, 505
HgaI	GACGC	1 cut(s)	620
HhaI	GCGC	1 cut(s)	183
Hin1II	CATG	6 cut(s)	110, 376, 445, 556, 674, 682
Hin6I	GCGC	1 cut(s)	181
HinP1I	GCGC	1 cut(s)	181
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HindIII	AAGCTT	1 cut(s)	322
HpaI	GTTAAC	1 cut(s)	295
HphI	GGTGA	1 cut(s)	320
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188I	TCNGA	5 cut(s)	17, 175, 212, 539, 631
Hpy188III	TCNNGA	1 cut(s)	578
Hpy8I	GTNNAC	1 cut(s)	295
HpyAV	CCTTC	4 cut(s)	191, 202, 457, 461
HpyCH4III	ACNGT	4 cut(s)	216, 292, 302, 724
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	6 cut(s)	33, 97, 104, 427, 607, 670
HpyF10VI	GCNNNNNNNGC	1 cut(s)	392
HpyF3I	CTNAG	7 cut(s)	78, 158, 209, 496, 561, 579, 699
HpySE526I	ACGT	1 cut(s)	204
Hsp92II	CATG	6 cut(s)	110, 376, 445, 556, 674, 682
HspAI	GCGC	1 cut(s)	181
KspAI	GTTAAC	1 cut(s)	295
Kzo9I	GATC	3 cut(s)	244, 519, 652
LmnI	GCTCC	3 cut(s)	144, 383, 400
LpnPI	CCDG	9 cut(s)	279, 291, 318, 405, 519, 548, 558, 570, 591
Lsp1109I	GCAGC	1 cut(s)	439
MaeI	CTAG	2 cut(s)	74, 405
MaeII	ACGT	1 cut(s)	204
MaeIII	GTNAC	2 cut(s)	216, 268
MalI	GATC	3 cut(s)	246, 521, 654
MboI	GATC	3 cut(s)	244, 519, 652
MboII	GAAGA	9 cut(s)	42, 45, 48, 51, 54, 122, 353, 362, 694
MhlI	GDGCHC	1 cut(s)	497
MlsI	TGGCCA	1 cut(s)	505
MluCI	AATT	3 cut(s)	275, 335, 623
MluNI	TGGCCA	1 cut(s)	505
MmeI	TCCRAC	1 cut(s)	462
MnlI	CCTC	4 cut(s)	54, 134, 152, 321
Mox20I	TGGCCA	1 cut(s)	505
Mph1103I	ATGCAT	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	505
MseI	TTAA	3 cut(s)	23, 128, 294
MslI	CAYNNNNRTG	2 cut(s)	151, 440
Msp20I	TGGCCA	1 cut(s)	505
MspCI	CTTAAG	1 cut(s)	22
MspR9I	CCNGG	1 cut(s)	306
Mva1269I	GAATGC	1 cut(s)	33
MvaI	CCWGG	1 cut(s)	306
MwoI	GCNNNNNNNGC	1 cut(s)	392
NdeII	GATC	3 cut(s)	244, 519, 652
NlaIII	CATG	6 cut(s)	110, 376, 445, 556, 674, 682
NlaIV	GGNNCC	1 cut(s)	576
NmuCI	GTSAC	1 cut(s)	268
NsbI	TGCGCA	1 cut(s)	182
NsiI	ATGCAT	1 cut(s)	35
NspI	RCATGY	1 cut(s)	556
NspV	TTCGAA	1 cut(s)	195
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PctI	GAATGC	1 cut(s)	33
PkrI	GCNGC	1 cut(s)	429
Ple19I	CGATCG	1 cut(s)	247
PpuMI	RGGWCCY	1 cut(s)	575
Psp5II	RGGWCCY	1 cut(s)	575
Psp6I	CCWGG	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	304
PspN4I	GGNNCC	1 cut(s)	576
PspPI	GGNCC	1 cut(s)	575
PspPPI	RGGWCCY	1 cut(s)	575
PvuI	CGATCG	1 cut(s)	247
RseI	CAYNNNNRTG	2 cut(s)	151, 440
SaqAI	TTAA	3 cut(s)	23, 128, 294
SatI	GCNGC	1 cut(s)	428
Sau3AI	GATC	3 cut(s)	244, 519, 652
Sau96I	GGNCC	1 cut(s)	575
ScrFI	CCNGG	1 cut(s)	306
SduI	GDGCHC	1 cut(s)	497
SetI	ASST	9 cut(s)	79, 141, 207, 326, 388, 432, 472, 531, 562
SfcI	CTRYAG	1 cut(s)	513
SfuI	TTCGAA	1 cut(s)	195
SinI	GGWCC	1 cut(s)	575
SmiMI	CAYNNNNRTG	2 cut(s)	151, 440
SmlI	CTYRAG	2 cut(s)	22, 325
SmoI	CTYRAG	2 cut(s)	22, 325
Sse9I	AATT	3 cut(s)	275, 335, 623
SspMI	CTAG	2 cut(s)	74, 405
StyD4I	CCNGG	1 cut(s)	304
StyI	CCWWGG	1 cut(s)	412
TaaI	ACNGT	4 cut(s)	216, 292, 302, 724
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	2 cut(s)	195, 243
TasI	AATT	3 cut(s)	275, 335, 623
Tru1I	TTAA	3 cut(s)	23, 128, 294
Tru9I	TTAA	3 cut(s)	23, 128, 294
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	1 cut(s)	427
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	8 cut(s)	123, 240, 252, 363, 636, 687, 694, 695
Vha464I	CTTAAG	1 cut(s)	22
VpaK11BI	GGWCC	1 cut(s)	575
XapI	RAATTY	3 cut(s)	275, 335, 623
XceI	RCATGY	1 cut(s)	556
XspI	CTAG	2 cut(s)	74, 405
Zsp2I	ATGCAT	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.