Rh2AG363900

Mitochondrial glycoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0007719
Physical Location & Seq
Reverse (-)
53865303 .. 53869292
3990 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG363900.1

Sequence Viewer

Length: 777 bp
ATGGCGCGCCTAATCCGACCTCTAAGAAACTCCATTTCTCGTCCCTCTTCTTCTTCTTCCAAAATCCTAATTCCCCAGTTACCCAGTTTGCGTCTTGCACCAGAAAAACAAGGCCCCCTCTTAAACCCCAATCTTCCATCACCACAGAGCGCAAGAACTTACATCTCTGAAATGCGCAAAGCGGCTTTCGAAGGCAACATGCTCAGACTCCTGCGCAATGAAATCCAATATGAACTCGATCGCTCTCCTCCTAATCAGCCAGTTTTAGAATTCAACTTATTTACAGTTGACAACCGGTCTGGCGAGCAATGGATAAGCTTGAAGAGAAAATTTGGACATAATGAAGAGATAAAGATTGAAGCCACCATGTTTGATGGATCTGTTCCTATTACAAAATCCGGAGGCGGTGGTGGTGGTGGTGGTGGAGGCCTTGGAGAAGATGTGCAACTTCACATTACTATGGTTGTCAATATCTCCAAGGAGGAAGGTGGCAATGCGTTGGAGATTATGTGCTCGGTATGGCCAGATACTATAGAGATCAACAAGCTATTCATACGAAAACCTGAGAACATGCCAGCTCAGCCCTATACGGGTCCTGAATTCAAGGAACTTGATGATGAGTTGCAAGACTCGCTTTACGAATTCTTAGAAGCAAGGGGTATAAATGATGATCTTGCTATTTTCTTGCACTCATATATGAAGAACAAAGATAAAACTGAGTTCATTAGATGGATGAGAAGTGTGAAATCATATATTGAAAAGAAGAAGAGGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko05168 map05168
Pfam Domains
Protein Families
MAM33

Protein Analysis

258

Amino Acids

29.27

Weight (kDa)

7.77

Isoelectric Point (pI)

71.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAM33 PF02330 71 - 252 1.7e-31 Mitochondrial glycoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 176, 215
AccII CGCG 1 cut(s) 7
AccIII TCCGGA 1 cut(s) 398
AciI CCGC 2 cut(s) 182, 405
AclWI GGATC 1 cut(s) 385
AcoI YGGCCR 1 cut(s) 521
AcsI RAATTY 4 cut(s) 269, 329, 599, 641
AfiI CCNNNNNNNGG 1 cut(s) 590
AgeI ACCGGT 1 cut(s) 294
AgsI TTSAA 5 cut(s) 274, 322, 359, 604, 758
AhdI GACNNNNNGTC 1 cut(s) 295
AluBI AGCT 3 cut(s) 318, 547, 578
AluI AGCT 3 cut(s) 318, 547, 578
Alw21I GWGCWC 1 cut(s) 515
AlwI GGATC 1 cut(s) 385
Aor13HI TCCGGA 1 cut(s) 398
AoxI GGCC 3 cut(s) 112, 427, 521
ApoI RAATTY 4 cut(s) 269, 329, 599, 641
AscI GGCGCGCC 1 cut(s) 5
AsiGI ACCGGT 1 cut(s) 294
AspLEI GCGC 5 cut(s) 7, 9, 152, 177, 216
AspS9I GGNCC 2 cut(s) 113, 593
AsuHPI GGTGA 1 cut(s) 132
AsuII TTCGAA 1 cut(s) 189
AvaII GGWCC 1 cut(s) 593
BalI TGGCCA 1 cut(s) 523
Bbv12I GWGCWC 1 cut(s) 515
BccI CCATC 3 cut(s) 145, 368, 723
BfmI CTRYAG 1 cut(s) 531
BisI GCNGC 1 cut(s) 183
BlpI GCTNAGC 1 cut(s) 579
BlsI GCNGC 1 cut(s) 184
Bme18I GGWCC 1 cut(s) 593
BmeRI GACNNNNNGTC 1 cut(s) 295
BmgT120I GGNCC 2 cut(s) 113, 593
BmiI GGNNCC 2 cut(s) 115, 594
BmrI ACTGGG 2 cut(s) 70, 78
BmuI ACTGGG 2 cut(s) 70, 78
Bpu1102I GCTNAGC 1 cut(s) 579
Bpu14I TTCGAA 1 cut(s) 189
BsaJI CCNNGG 2 cut(s) 430, 477
BsaWI WCCGGW 2 cut(s) 294, 398
BsaXI ACNNNNNCTCC 4 cut(s) 426, 456, 494, 524
Bsc4I CCNNNNNNNGG 1 cut(s) 590
Bse118I RCCGGY 1 cut(s) 294
Bse1I ACTGG 3 cut(s) 76, 84, 260
Bse3DI GCAATG 3 cut(s) 223, 314, 499
BseAI TCCGGA 1 cut(s) 398
BseDI CCNNGG 2 cut(s) 430, 477
BseGI GGATG 1 cut(s) 738
BseLI CCNNNNNNNGG 1 cut(s) 590
BseMI GCAATG 3 cut(s) 223, 314, 499
BseMII CTCAG 4 cut(s) 217, 555, 593, 708
BseNI ACTGG 3 cut(s) 76, 84, 260
BsePI GCGCGC 1 cut(s) 5
BseRI GAGGAG 1 cut(s) 237
Bsh1236I CGCG 1 cut(s) 7
Bsh1285I CGRYCG 1 cut(s) 241
BshFI GGCC 3 cut(s) 114, 429, 523
BshTI ACCGGT 1 cut(s) 294
BsiEI CGRYCG 1 cut(s) 241
BsiHKAI GWGCWC 1 cut(s) 515
BsiSI CCGG 2 cut(s) 295, 399
BslFI GGGAC 1 cut(s) 27
BslI CCNNNNNNNGG 1 cut(s) 590
BsmFI GGGAC 1 cut(s) 27
BsnI GGCC 3 cut(s) 114, 429, 523
Bsp119I TTCGAA 1 cut(s) 189
Bsp1286I GDGCHC 1 cut(s) 515
Bsp13I TCCGGA 1 cut(s) 398
Bsp143I GATC 4 cut(s) 238, 377, 537, 670
Bsp1720I GCTNAGC 1 cut(s) 579
BspACI CCGC 2 cut(s) 182, 405
BspANI GGCC 3 cut(s) 114, 429, 523
BspCNI CTCAG 4 cut(s) 216, 556, 592, 709
BspEI TCCGGA 1 cut(s) 398
BspFNI CGCG 1 cut(s) 7
BspLI GGNNCC 2 cut(s) 115, 594
BspPI GGATC 1 cut(s) 385
BspT104I TTCGAA 1 cut(s) 189
BsrDI GCAATG 3 cut(s) 223, 314, 499
BsrFI RCCGGY 1 cut(s) 294
BsrI ACTGG 3 cut(s) 76, 84, 260
BssAI RCCGGY 1 cut(s) 294
BssECI CCNNGG 2 cut(s) 430, 477
BssHII GCGCGC 1 cut(s) 5
BssMI GATC 4 cut(s) 238, 377, 537, 670
BssT1I CCWWGG 2 cut(s) 430, 477
Bst4CI ACNGT 1 cut(s) 286
Bst6I CTCTTC 4 cut(s) 52, 317, 339, 761
BstBI TTCGAA 1 cut(s) 189
BstC8I GCNNGC 3 cut(s) 7, 305, 576
BstDEI CTNAG 6 cut(s) 23, 203, 564, 579, 646, 717
BstF5I GGATG 1 cut(s) 738
BstFNI CGCG 1 cut(s) 7
BstHHI GCGC 5 cut(s) 7, 9, 152, 177, 216
BstKTI GATC 4 cut(s) 241, 380, 540, 673
BstMBI GATC 4 cut(s) 238, 377, 537, 670
BstMCI CGRYCG 1 cut(s) 241
BstMWI GCNNNNNNNGC 2 cut(s) 580, 631
BstNSI RCATGY 2 cut(s) 202, 574
BstSFI CTRYAG 1 cut(s) 531
BstUI CGCG 1 cut(s) 7
BstX2I RGATCY 1 cut(s) 377
BstYI RGATCY 1 cut(s) 377
BsuRI GGCC 3 cut(s) 114, 429, 523
BtsCI GGATG 1 cut(s) 738
Cac8I GCNNGC 3 cut(s) 7, 305, 576
CfoI GCGC 5 cut(s) 7, 9, 152, 177, 216
Cfr10I RCCGGY 1 cut(s) 294
Cfr13I GGNCC 2 cut(s) 113, 593
CseI GACGC 1 cut(s) 80
CspAI ACCGGT 1 cut(s) 294
CspCI CAANNNNNGTGG 2 cut(s) 352, 387
CviAII CATG 3 cut(s) 199, 367, 571
DdeI CTNAG 6 cut(s) 23, 203, 564, 579, 646, 717
DpnI GATC 4 cut(s) 240, 379, 539, 672
DpnII GATC 4 cut(s) 238, 377, 537, 670
DriI GACNNNNNGTC 1 cut(s) 295
EaeI YGGCCR 1 cut(s) 521
Eam1104I CTCTTC 4 cut(s) 52, 317, 339, 761
Eam1105I GACNNNNNGTC 1 cut(s) 295
EarI CTCTTC 4 cut(s) 52, 317, 339, 761
Eco130I CCWWGG 2 cut(s) 430, 477
Eco147I AGGCCT 1 cut(s) 429
Eco47I GGWCC 1 cut(s) 593
EcoO109I RGGNCCY 2 cut(s) 113, 593
EcoRI GAATTC 3 cut(s) 269, 599, 641
EcoT14I CCWWGG 2 cut(s) 430, 477
ErhI CCWWGG 2 cut(s) 430, 477
FaeI CATG 3 cut(s) 202, 370, 574
FalI AAGNNNNNCTT 2 cut(s) 618, 650
FaqI GGGAC 1 cut(s) 27
FatI CATG 3 cut(s) 198, 366, 570
Fnu4HI GCNGC 1 cut(s) 183
FokI GGATG 1 cut(s) 745
Fsp4HI GCNGC 1 cut(s) 183
FspI TGCGCA 2 cut(s) 176, 215
GlaI GCGC 5 cut(s) 6, 8, 151, 176, 215
GluI GCNGC 1 cut(s) 183
HaeIII GGCC 3 cut(s) 114, 429, 523
HapII CCGG 2 cut(s) 295, 399
HgaI GACGC 1 cut(s) 80
HhaI GCGC 5 cut(s) 7, 9, 152, 177, 216
Hin1II CATG 3 cut(s) 202, 370, 574
Hin6I GCGC 5 cut(s) 5, 7, 150, 175, 214
HinP1I GCGC 5 cut(s) 5, 7, 150, 175, 214
HincII GTYRAC 1 cut(s) 289
HindII GTYRAC 1 cut(s) 289
HindIII AAGCTT 1 cut(s) 316
HinfI GANTC 2 cut(s) 207, 629
HpaII CCGG 2 cut(s) 295, 399
HphI GGTGA 1 cut(s) 132
Hpy166II GTNNAC 1 cut(s) 289
Hpy188I TCNGA 3 cut(s) 17, 169, 206
Hpy188III TCNNGA 2 cut(s) 399, 596
Hpy8I GTNNAC 1 cut(s) 289
HpyAV CCTTC 2 cut(s) 185, 479
HpyCH4III ACNGT 1 cut(s) 286
HpyCH4V TGCA 4 cut(s) 98, 445, 625, 688
HpyF10VI GCNNNNNNNGC 2 cut(s) 580, 631
HpyF3I CTNAG 6 cut(s) 23, 203, 564, 579, 646, 717
Hsp92II CATG 3 cut(s) 202, 370, 574
HspAI GCGC 5 cut(s) 5, 7, 150, 175, 214
Kpn2I TCCGGA 1 cut(s) 398
Kzo9I GATC 4 cut(s) 238, 377, 537, 670
MaeIII GTNAC 1 cut(s) 78
MalI GATC 4 cut(s) 240, 379, 539, 672
MboI GATC 4 cut(s) 238, 377, 537, 670
MflI RGATCY 1 cut(s) 377
MhlI GDGCHC 1 cut(s) 515
MlsI TGGCCA 1 cut(s) 523
MluCI AATT 5 cut(s) 69, 269, 329, 599, 641
MluNI TGGCCA 1 cut(s) 523
MlyI GAGTC 2 cut(s) 201, 623
MmeI TCCRAC 2 cut(s) 40, 480
MnlI CCTC 8 cut(s) 30, 55, 128, 258, 395, 419, 475, 762
Mox20I TGGCCA 1 cut(s) 523
MroI TCCGGA 1 cut(s) 398
MscI TGGCCA 1 cut(s) 523
MseI TTAA 1 cut(s) 122
MslI CAYNNNNRTG 1 cut(s) 458
Msp20I TGGCCA 1 cut(s) 523
MspI CCGG 2 cut(s) 295, 399
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 2 cut(s) 580, 631
NdeII GATC 4 cut(s) 238, 377, 537, 670
NlaIII CATG 3 cut(s) 202, 370, 574
NlaIV GGNNCC 2 cut(s) 115, 594
NsbI TGCGCA 2 cut(s) 176, 215
NspI RCATGY 2 cut(s) 202, 574
NspV TTCGAA 1 cut(s) 189
PalAI GGCGCGCC 1 cut(s) 5
PauI GCGCGC 1 cut(s) 5
PceI AGGCCT 1 cut(s) 429
PinAI ACCGGT 1 cut(s) 294
PkrI GCNGC 1 cut(s) 184
Ple19I CGATCG 1 cut(s) 241
PleI GAGTC 2 cut(s) 201, 623
PpsI GAGTC 2 cut(s) 201, 623
PpuMI RGGWCCY 1 cut(s) 593
Psp5II RGGWCCY 1 cut(s) 593
PspN4I GGNNCC 2 cut(s) 115, 594
PspPI GGNCC 2 cut(s) 113, 593
PspPPI RGGWCCY 1 cut(s) 593
PsuI RGATCY 1 cut(s) 377
PteI GCGCGC 1 cut(s) 5
PvuI CGATCG 1 cut(s) 241
RseI CAYNNNNRTG 1 cut(s) 458
SaqAI TTAA 1 cut(s) 122
SatI GCNGC 1 cut(s) 183
Sau3AI GATC 4 cut(s) 238, 377, 537, 670
Sau96I GGNCC 2 cut(s) 113, 593
SchI GAGTC 2 cut(s) 201, 623
SduI GDGCHC 1 cut(s) 515
SetI ASST 7 cut(s) 22, 320, 490, 549, 565, 580, 773
SfcI CTRYAG 1 cut(s) 531
SfuI TTCGAA 1 cut(s) 189
SgsI GGCGCGCC 1 cut(s) 5
SinI GGWCC 1 cut(s) 593
SmiMI CAYNNNNRTG 1 cut(s) 458
Sse9I AATT 5 cut(s) 69, 269, 329, 599, 641
SseBI AGGCCT 1 cut(s) 429
SsiI CCGC 2 cut(s) 182, 405
StuI AGGCCT 1 cut(s) 429
StyI CCWWGG 2 cut(s) 430, 477
TaaI ACNGT 1 cut(s) 286
TaqI TCGA 2 cut(s) 189, 237
TasI AATT 5 cut(s) 69, 269, 329, 599, 641
TauI GCSGC 1 cut(s) 185
Tru1I TTAA 1 cut(s) 122
Tru9I TTAA 1 cut(s) 122
TspDTI ATGAA 6 cut(s) 234, 246, 357, 541, 712, 713
VpaK11BI GGWCC 1 cut(s) 593
XapI RAATTY 4 cut(s) 269, 329, 599, 641
XceI RCATGY 2 cut(s) 202, 574
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.