Rw2G029620

Mitochondrial glycoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0007719
Physical Location & Seq
Reverse (-)
47997439 .. 48000233
2795 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G029620.1

Sequence Viewer

Length: 765 bp
ATGGCGCGCCTAATCCGACCTCTAAGAAACTCCATTTCTCGTCCCGCTTCTTCTTCCAAAATCCTAATTCCCCAGTTACCCAGTTTGCGTCTTGCACCAGAAAAACAAGGCCCCCTCTTAAACCCCAATCTTCCATCACCACAGAGCGCAAGAACTTACATCTCTGAAATGCGCAAATCGGCTTTCGAAGGCAACATGCTCAGACTCCTGCGCAATGAAATCCAATATGAACTCGATCGCTCTCCTCCTAACCAGCCAGTTTTAGAATTCAACTTATTTACAGTTGACAACCGGTCTGGCGAGCAATGGATAAGCTTGAAGAGAAAATTTGGACATAATGAAGAGATAAAGATTGAAGCCACCATGTTTGATGGATCTGTTCCTATTACAAAATCCGGAGGCGGTGGTGGTGGAGGCCTTGGAGAAGATGTGCAACTTCACATTACTATGGTTGTCAATATCTCCAAGGAGGAAGGTGGCAATGCGTTGGAGATTATGTGCTCGGTATGGCCAGATACTATAGAGATCAACAAGCTATTCATACGAAAACCTGAGAACATGCCAGCTCAGCCCTATACGGGTCCTGAATTCAAGGAACTTGATGATGAGTTGCAAGACTCGCTTTACGAATTCTTAGAAGCAAGGGGTATAAATGATGATCTTGCTATTTTCTTGCACTCATATATGAAGAACAAAGATAAAACTGAGTTCATTAGATGGATGAGAACTGTGAAATCATATATTGAAAAGAAGAAGAGGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko05168 map05168
Pfam Domains
Protein Families
MAM33

Protein Analysis

254

Amino Acids

29.03

Weight (kDa)

7.77

Isoelectric Point (pI)

67.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAM33 PF02330 70 - 248 3.5e-31 Mitochondrial glycoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 173, 212
AccII CGCG 1 cut(s) 7
AccIII TCCGGA 1 cut(s) 395
AciI CCGC 2 cut(s) 45, 402
AclWI GGATC 1 cut(s) 382
AcoI YGGCCR 1 cut(s) 509
AcsI RAATTY 4 cut(s) 266, 326, 587, 629
AfiI CCNNNNNNNGG 1 cut(s) 578
AgeI ACCGGT 1 cut(s) 291
AgsI TTSAA 5 cut(s) 271, 319, 356, 592, 746
AhdI GACNNNNNGTC 1 cut(s) 292
AluBI AGCT 3 cut(s) 315, 535, 566
AluI AGCT 3 cut(s) 315, 535, 566
Alw21I GWGCWC 1 cut(s) 503
AlwI GGATC 1 cut(s) 382
Aor13HI TCCGGA 1 cut(s) 395
AoxI GGCC 3 cut(s) 109, 415, 509
ApoI RAATTY 4 cut(s) 266, 326, 587, 629
AscI GGCGCGCC 1 cut(s) 5
AsiGI ACCGGT 1 cut(s) 291
AspLEI GCGC 5 cut(s) 7, 9, 149, 174, 213
AspS9I GGNCC 2 cut(s) 110, 581
AsuHPI GGTGA 1 cut(s) 129
AsuII TTCGAA 1 cut(s) 186
AvaII GGWCC 1 cut(s) 581
BalI TGGCCA 1 cut(s) 511
Bbv12I GWGCWC 1 cut(s) 503
BccI CCATC 3 cut(s) 142, 365, 711
BfmI CTRYAG 1 cut(s) 519
BlpI GCTNAGC 1 cut(s) 567
Bme18I GGWCC 1 cut(s) 581
BmeRI GACNNNNNGTC 1 cut(s) 292
BmgT120I GGNCC 2 cut(s) 110, 581
BmiI GGNNCC 2 cut(s) 112, 582
BmrI ACTGGG 2 cut(s) 67, 75
BmuI ACTGGG 2 cut(s) 67, 75
Bpu1102I GCTNAGC 1 cut(s) 567
Bpu14I TTCGAA 1 cut(s) 186
BsaJI CCNNGG 2 cut(s) 418, 465
BsaWI WCCGGW 2 cut(s) 291, 395
BsaXI ACNNNNNCTCC 4 cut(s) 414, 444, 482, 512
Bsc4I CCNNNNNNNGG 1 cut(s) 578
Bse118I RCCGGY 1 cut(s) 291
Bse1I ACTGG 3 cut(s) 73, 81, 257
Bse3DI GCAATG 3 cut(s) 220, 311, 487
BseAI TCCGGA 1 cut(s) 395
BseDI CCNNGG 2 cut(s) 418, 465
BseGI GGATG 1 cut(s) 726
BseLI CCNNNNNNNGG 1 cut(s) 578
BseMI GCAATG 3 cut(s) 220, 311, 487
BseMII CTCAG 4 cut(s) 214, 543, 581, 696
BseNI ACTGG 3 cut(s) 73, 81, 257
BsePI GCGCGC 1 cut(s) 5
BseRI GAGGAG 1 cut(s) 234
Bsh1236I CGCG 1 cut(s) 7
Bsh1285I CGRYCG 1 cut(s) 238
BshFI GGCC 3 cut(s) 111, 417, 511
BshTI ACCGGT 1 cut(s) 291
BsiEI CGRYCG 1 cut(s) 238
BsiHKAI GWGCWC 1 cut(s) 503
BsiSI CCGG 2 cut(s) 292, 396
BslFI GGGAC 1 cut(s) 27
BslI CCNNNNNNNGG 1 cut(s) 578
BsmFI GGGAC 1 cut(s) 27
BsnI GGCC 3 cut(s) 111, 417, 511
Bsp119I TTCGAA 1 cut(s) 186
Bsp1286I GDGCHC 1 cut(s) 503
Bsp13I TCCGGA 1 cut(s) 395
Bsp143I GATC 4 cut(s) 235, 374, 525, 658
Bsp1720I GCTNAGC 1 cut(s) 567
BspACI CCGC 2 cut(s) 45, 402
BspANI GGCC 3 cut(s) 111, 417, 511
BspCNI CTCAG 4 cut(s) 213, 544, 580, 697
BspEI TCCGGA 1 cut(s) 395
BspFNI CGCG 1 cut(s) 7
BspLI GGNNCC 2 cut(s) 112, 582
BspPI GGATC 1 cut(s) 382
BspT104I TTCGAA 1 cut(s) 186
BsrDI GCAATG 3 cut(s) 220, 311, 487
BsrFI RCCGGY 1 cut(s) 291
BsrI ACTGG 3 cut(s) 73, 81, 257
BssAI RCCGGY 1 cut(s) 291
BssECI CCNNGG 2 cut(s) 418, 465
BssHII GCGCGC 1 cut(s) 5
BssMI GATC 4 cut(s) 235, 374, 525, 658
BssT1I CCWWGG 2 cut(s) 418, 465
Bst4CI ACNGT 2 cut(s) 283, 730
Bst6I CTCTTC 3 cut(s) 314, 336, 749
BstBI TTCGAA 1 cut(s) 186
BstC8I GCNNGC 3 cut(s) 7, 302, 564
BstDEI CTNAG 6 cut(s) 23, 200, 552, 567, 634, 705
BstF5I GGATG 1 cut(s) 726
BstFNI CGCG 1 cut(s) 7
BstHHI GCGC 5 cut(s) 7, 9, 149, 174, 213
BstKTI GATC 4 cut(s) 238, 377, 528, 661
BstMBI GATC 4 cut(s) 235, 374, 525, 658
BstMCI CGRYCG 1 cut(s) 238
BstMWI GCNNNNNNNGC 2 cut(s) 568, 619
BstNSI RCATGY 2 cut(s) 199, 562
BstSFI CTRYAG 1 cut(s) 519
BstUI CGCG 1 cut(s) 7
BstX2I RGATCY 1 cut(s) 374
BstYI RGATCY 1 cut(s) 374
BsuRI GGCC 3 cut(s) 111, 417, 511
BtsCI GGATG 1 cut(s) 726
Cac8I GCNNGC 3 cut(s) 7, 302, 564
CfoI GCGC 5 cut(s) 7, 9, 149, 174, 213
Cfr10I RCCGGY 1 cut(s) 291
Cfr13I GGNCC 2 cut(s) 110, 581
CseI GACGC 1 cut(s) 77
CspAI ACCGGT 1 cut(s) 291
CspCI CAANNNNNGTGG 2 cut(s) 349, 384
CviAII CATG 3 cut(s) 196, 364, 559
DdeI CTNAG 6 cut(s) 23, 200, 552, 567, 634, 705
DpnI GATC 4 cut(s) 237, 376, 527, 660
DpnII GATC 4 cut(s) 235, 374, 525, 658
DriI GACNNNNNGTC 1 cut(s) 292
EaeI YGGCCR 1 cut(s) 509
Eam1104I CTCTTC 3 cut(s) 314, 336, 749
Eam1105I GACNNNNNGTC 1 cut(s) 292
EarI CTCTTC 3 cut(s) 314, 336, 749
Eco130I CCWWGG 2 cut(s) 418, 465
Eco147I AGGCCT 1 cut(s) 417
Eco47I GGWCC 1 cut(s) 581
EcoO109I RGGNCCY 2 cut(s) 110, 581
EcoRI GAATTC 3 cut(s) 266, 587, 629
EcoT14I CCWWGG 2 cut(s) 418, 465
ErhI CCWWGG 2 cut(s) 418, 465
FaeI CATG 3 cut(s) 199, 367, 562
FalI AAGNNNNNCTT 2 cut(s) 606, 638
FaqI GGGAC 1 cut(s) 27
FatI CATG 3 cut(s) 195, 363, 558
FauI CCCGC 1 cut(s) 52
FokI GGATG 1 cut(s) 733
FspI TGCGCA 2 cut(s) 173, 212
GlaI GCGC 5 cut(s) 6, 8, 148, 173, 212
HaeIII GGCC 3 cut(s) 111, 417, 511
HapII CCGG 2 cut(s) 292, 396
HgaI GACGC 1 cut(s) 77
HhaI GCGC 5 cut(s) 7, 9, 149, 174, 213
Hin1II CATG 3 cut(s) 199, 367, 562
Hin6I GCGC 5 cut(s) 5, 7, 147, 172, 211
HinP1I GCGC 5 cut(s) 5, 7, 147, 172, 211
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HindIII AAGCTT 1 cut(s) 313
HinfI GANTC 2 cut(s) 204, 617
HpaII CCGG 2 cut(s) 292, 396
HphI GGTGA 1 cut(s) 129
Hpy166II GTNNAC 1 cut(s) 286
Hpy188I TCNGA 3 cut(s) 17, 166, 203
Hpy188III TCNNGA 2 cut(s) 396, 584
Hpy8I GTNNAC 1 cut(s) 286
HpyAV CCTTC 2 cut(s) 182, 467
HpyCH4III ACNGT 2 cut(s) 283, 730
HpyCH4V TGCA 4 cut(s) 95, 433, 613, 676
HpyF10VI GCNNNNNNNGC 2 cut(s) 568, 619
HpyF3I CTNAG 6 cut(s) 23, 200, 552, 567, 634, 705
Hsp92II CATG 3 cut(s) 199, 367, 562
HspAI GCGC 5 cut(s) 5, 7, 147, 172, 211
Kpn2I TCCGGA 1 cut(s) 395
Kzo9I GATC 4 cut(s) 235, 374, 525, 658
MaeIII GTNAC 1 cut(s) 75
MalI GATC 4 cut(s) 237, 376, 527, 660
MboI GATC 4 cut(s) 235, 374, 525, 658
MboII GAAGA 8 cut(s) 42, 45, 122, 331, 353, 437, 700, 763
MflI RGATCY 1 cut(s) 374
MhlI GDGCHC 1 cut(s) 503
MlsI TGGCCA 1 cut(s) 511
MluCI AATT 5 cut(s) 66, 266, 326, 587, 629
MluNI TGGCCA 1 cut(s) 511
MlyI GAGTC 2 cut(s) 198, 611
MmeI TCCRAC 2 cut(s) 40, 468
MnlI CCTC 7 cut(s) 30, 125, 255, 392, 407, 463, 750
Mox20I TGGCCA 1 cut(s) 511
MroI TCCGGA 1 cut(s) 395
MscI TGGCCA 1 cut(s) 511
MseI TTAA 1 cut(s) 119
MslI CAYNNNNRTG 1 cut(s) 446
Msp20I TGGCCA 1 cut(s) 511
MspI CCGG 2 cut(s) 292, 396
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 2 cut(s) 568, 619
NdeII GATC 4 cut(s) 235, 374, 525, 658
NlaIII CATG 3 cut(s) 199, 367, 562
NlaIV GGNNCC 2 cut(s) 112, 582
NsbI TGCGCA 2 cut(s) 173, 212
NspI RCATGY 2 cut(s) 199, 562
NspV TTCGAA 1 cut(s) 186
PalAI GGCGCGCC 1 cut(s) 5
PauI GCGCGC 1 cut(s) 5
PceI AGGCCT 1 cut(s) 417
PinAI ACCGGT 1 cut(s) 291
Ple19I CGATCG 1 cut(s) 238
PleI GAGTC 2 cut(s) 198, 611
PpsI GAGTC 2 cut(s) 198, 611
PpuMI RGGWCCY 1 cut(s) 581
Psp5II RGGWCCY 1 cut(s) 581
PspN4I GGNNCC 2 cut(s) 112, 582
PspPI GGNCC 2 cut(s) 110, 581
PspPPI RGGWCCY 1 cut(s) 581
PsuI RGATCY 1 cut(s) 374
PteI GCGCGC 1 cut(s) 5
PvuI CGATCG 1 cut(s) 238
RseI CAYNNNNRTG 1 cut(s) 446
SaqAI TTAA 1 cut(s) 119
Sau3AI GATC 4 cut(s) 235, 374, 525, 658
Sau96I GGNCC 2 cut(s) 110, 581
SchI GAGTC 2 cut(s) 198, 611
SduI GDGCHC 1 cut(s) 503
SetI ASST 7 cut(s) 22, 317, 478, 537, 553, 568, 761
SfcI CTRYAG 1 cut(s) 519
SfuI TTCGAA 1 cut(s) 186
SgsI GGCGCGCC 1 cut(s) 5
SinI GGWCC 1 cut(s) 581
SmiMI CAYNNNNRTG 1 cut(s) 446
Sse9I AATT 5 cut(s) 66, 266, 326, 587, 629
SseBI AGGCCT 1 cut(s) 417
SsiI CCGC 2 cut(s) 45, 402
StuI AGGCCT 1 cut(s) 417
StyI CCWWGG 2 cut(s) 418, 465
TaaI ACNGT 2 cut(s) 283, 730
TaqI TCGA 2 cut(s) 186, 234
TasI AATT 5 cut(s) 66, 266, 326, 587, 629
Tru1I TTAA 1 cut(s) 119
Tru9I TTAA 1 cut(s) 119
TspDTI ATGAA 6 cut(s) 231, 243, 354, 529, 700, 701
VpaK11BI GGWCC 1 cut(s) 581
XapI RAATTY 4 cut(s) 266, 326, 587, 629
XceI RCATGY 2 cut(s) 199, 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.