pycom09g14170

Mitochondrial glycoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0007719
Physical Location & Seq
Forward (+)
13568668 .. 13570391
1724 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g14170.1

Sequence Viewer

Length: 816 bp
ATGAGGACCTACCTTATACCCTTAAAACCTCTGAAACTGCAAACTATTCCAAACTCTCCTTTCATGGCGCGCCCAATCCGATCCCTGAGAAAATCCTTTCCCTTTTCTTCATCTTCCAAAATTCTAATTCAGAAAACACCCACTTTGCATTTGGCACATGAAAAACAAGTCTCTCTCATAAGCCCTTCGCTCCAACCACCGCAATGCCGACGAACTTACATCTCCGAAATGCGCAAATCGGCCTTGGAAGGCAACATTCTCAGACTCCTCCGCAATGAAATCCAGTACGAGCTCAATCACTCTCCTGCCACTCAGCAAGTTACAAAATTCAAGTCGTTTACAGTTAACAACCAGCCTGGTGAGCAATGGATAAGCTTGAAGAGAAACTTTGGAGAGAAAGAGGACATTAAGATTGAAGCCATCATGTTTGATGGATCTGTTCCTGCTCCAAATTCCAAAGGTGTTGCTGGCCTTGGAAAAGATGTGCAGCTTCACATTACAATTTGTGTTAATATCTTCAAGAAGGAAGGCGGCAATGTGTTGGAGATCATGTGTTCAACTTGGCCAGATAGTATAGAGGTCTACAAGCTTTCCATCCGAAAACCTGAGAAGGTGCCAGCTCAGCCTTATGTGGGTCCTGAGTTCAAGGAACTTGATGATGAGTTGCAAGACTCACTTTATGAATTCTTGGAAGCGAGGAGTATGAACAATGATTTTGCTATTTTCTTGCACGAATACATGAAGAACAAAGATAAAACTGAGTTCATTAGATGGATGAGAACCGTGAAATCATTTATTGAAAAGAAAGTAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko05168 map05168
Pfam Domains
Protein Families
MAM33

Protein Analysis

272

Amino Acids

31.32

Weight (kDa)

9.34

Isoelectric Point (pI)

54.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAM33 PF02330 90 - 266 6.4e-28 Mitochondrial glycoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 233
AccB1I GGYRCC 1 cut(s) 613
AccI GTMKAC 1 cut(s) 582
AccII CGCG 1 cut(s) 70
AciI CCGC 3 cut(s) 200, 271, 531
AclWI GGATC 2 cut(s) 75, 442
AcoI YGGCCR 1 cut(s) 563
AcsI RAATTY 4 cut(s) 120, 326, 451, 683
AfaI GTAC 1 cut(s) 287
AfiI CCNNNNNNNGG 1 cut(s) 632
AgsI TTSAA 7 cut(s) 331, 379, 416, 520, 558, 646, 800
AjnI CCWGG 1 cut(s) 355
AluBI AGCT 5 cut(s) 292, 375, 490, 589, 620
AluI AGCT 5 cut(s) 292, 375, 490, 589, 620
Alw21I GWGCWC 1 cut(s) 294
Alw26I GTCTC 1 cut(s) 175
AlwI GGATC 2 cut(s) 75, 442
AoxI GGCC 3 cut(s) 240, 469, 563
ApeKI GCWGC 1 cut(s) 487
ApoI RAATTY 4 cut(s) 120, 326, 451, 683
ArsI GACNNNNNNTTYG 2 cut(s) 317, 349
AscI GGCGCGCC 1 cut(s) 68
AspLEI GCGC 3 cut(s) 70, 72, 234
AspS9I GGNCC 2 cut(s) 6, 635
AsuHPI GGTGA 1 cut(s) 371
AvaII GGWCC 2 cut(s) 6, 635
BalI TGGCCA 1 cut(s) 565
BanI GGYRCC 1 cut(s) 613
BanII GRGCYC 1 cut(s) 294
Bbv12I GWGCWC 1 cut(s) 294
BbvI GCAGC 1 cut(s) 499
BccI CCATC 4 cut(s) 425, 428, 602, 765
BciT130I CCWGG 1 cut(s) 357
BcoDI GTCTC 1 cut(s) 175
BisI GCNGC 2 cut(s) 488, 532
BlpI GCTNAGC 1 cut(s) 621
BlsI GCNGC 2 cut(s) 489, 533
Bme1390I CCNGG 1 cut(s) 357
Bme18I GGWCC 2 cut(s) 6, 635
BmgT120I GGNCC 2 cut(s) 6, 635
BmiI GGNNCC 2 cut(s) 615, 636
BmrFI CCNGG 1 cut(s) 357
Bpu1102I GCTNAGC 1 cut(s) 621
BsaJI CCNNGG 2 cut(s) 243, 472
BsaXI ACNNNNNCTCC 2 cut(s) 536, 566
Bsc4I CCNNNNNNNGG 1 cut(s) 632
Bse1I ACTGG 1 cut(s) 283
Bse3DI GCAATG 4 cut(s) 209, 280, 371, 541
BseBI CCWGG 1 cut(s) 357
BseDI CCNNGG 2 cut(s) 243, 472
BseGI GGATG 2 cut(s) 594, 780
BseLI CCNNNNNNNGG 1 cut(s) 632
BseMI GCAATG 4 cut(s) 209, 280, 371, 541
BseMII CTCAG 7 cut(s) 77, 274, 326, 597, 630, 635, 750
BseNI ACTGG 1 cut(s) 283
BsePI GCGCGC 1 cut(s) 68
BseRI GAGGAG 2 cut(s) 257, 712
BseXI GCAGC 1 cut(s) 499
BsgI GTGCAG 1 cut(s) 506
Bsh1236I CGCG 1 cut(s) 70
BshFI GGCC 3 cut(s) 242, 471, 565
BshNI GGYRCC 1 cut(s) 613
BsiHKAI GWGCWC 1 cut(s) 294
BslI CCNNNNNNNGG 1 cut(s) 632
BsmAI GTCTC 1 cut(s) 175
BsnI GGCC 3 cut(s) 242, 471, 565
Bsp1286I GDGCHC 1 cut(s) 294
Bsp143I GATC 3 cut(s) 80, 434, 546
Bsp1720I GCTNAGC 1 cut(s) 621
BspACI CCGC 3 cut(s) 200, 271, 531
BspANI GGCC 3 cut(s) 242, 471, 565
BspCNI CTCAG 7 cut(s) 78, 273, 325, 598, 631, 634, 751
BspFNI CGCG 1 cut(s) 70
BspLI GGNNCC 2 cut(s) 615, 636
BspPI GGATC 2 cut(s) 75, 442
BspT107I GGYRCC 1 cut(s) 613
BsrDI GCAATG 4 cut(s) 209, 280, 371, 541
BsrI ACTGG 1 cut(s) 283
BssECI CCNNGG 2 cut(s) 243, 472
BssHII GCGCGC 1 cut(s) 68
BssMI GATC 3 cut(s) 80, 434, 546
BssT1I CCWWGG 2 cut(s) 243, 472
Bst2UI CCWGG 1 cut(s) 357
Bst4CI ACNGT 2 cut(s) 343, 784
Bst6I CTCTTC 1 cut(s) 374
BstC8I GCNNGC 3 cut(s) 70, 469, 618
BstDEI CTNAG 7 cut(s) 86, 260, 312, 606, 621, 639, 759
BstF5I GGATG 2 cut(s) 594, 780
BstFNI CGCG 1 cut(s) 70
BstHHI GCGC 3 cut(s) 70, 72, 234
BstKTI GATC 3 cut(s) 83, 437, 549
BstMAI GTCTC 1 cut(s) 175
BstMBI GATC 3 cut(s) 80, 434, 546
BstMWI GCNNNNNNNGC 2 cut(s) 361, 622
BstNI CCWGG 1 cut(s) 357
BstSCI CCNGG 1 cut(s) 355
BstUI CGCG 1 cut(s) 70
BstV1I GCAGC 1 cut(s) 499
BstX2I RGATCY 1 cut(s) 434
BstYI RGATCY 1 cut(s) 434
BsuRI GGCC 3 cut(s) 242, 471, 565
BtsCI GGATG 2 cut(s) 594, 780
Cac8I GCNNGC 3 cut(s) 70, 469, 618
CfoI GCGC 3 cut(s) 70, 72, 234
Cfr13I GGNCC 2 cut(s) 6, 635
Csp6I GTAC 1 cut(s) 286
CviAII CATG 5 cut(s) 64, 158, 424, 550, 739
CviQI GTAC 1 cut(s) 286
DdeI CTNAG 7 cut(s) 86, 260, 312, 606, 621, 639, 759
DpnI GATC 3 cut(s) 82, 436, 548
DpnII GATC 3 cut(s) 80, 434, 546
EaeI YGGCCR 1 cut(s) 563
Eam1104I CTCTTC 1 cut(s) 374
EarI CTCTTC 1 cut(s) 374
Ecl136II GAGCTC 1 cut(s) 292
Eco130I CCWWGG 2 cut(s) 243, 472
Eco24I GRGCYC 1 cut(s) 294
Eco47I GGWCC 2 cut(s) 6, 635
Eco53kI GAGCTC 1 cut(s) 292
EcoICRI GAGCTC 1 cut(s) 292
EcoO109I RGGNCCY 2 cut(s) 6, 635
EcoRI GAATTC 1 cut(s) 683
EcoRII CCWGG 1 cut(s) 355
EcoT14I CCWWGG 2 cut(s) 243, 472
EcoT38I GRGCYC 1 cut(s) 294
ErhI CCWWGG 2 cut(s) 243, 472
FaeI CATG 5 cut(s) 67, 161, 427, 553, 742
FalI AAGNNNNNCTT 4 cut(s) 371, 403, 660, 692
FatI CATG 5 cut(s) 63, 157, 423, 549, 738
FblI GTMKAC 1 cut(s) 582
Fnu4HI GCNGC 2 cut(s) 488, 532
FokI GGATG 2 cut(s) 581, 787
FriOI GRGCYC 1 cut(s) 294
Fsp4HI GCNGC 2 cut(s) 488, 532
FspI TGCGCA 1 cut(s) 233
GlaI GCGC 3 cut(s) 69, 71, 233
GluI GCNGC 2 cut(s) 488, 532
HaeIII GGCC 3 cut(s) 242, 471, 565
HhaI GCGC 3 cut(s) 70, 72, 234
Hin1II CATG 5 cut(s) 67, 161, 427, 553, 742
Hin6I GCGC 3 cut(s) 68, 70, 232
HinP1I GCGC 3 cut(s) 68, 70, 232
HincII GTYRAC 1 cut(s) 346
HindII GTYRAC 1 cut(s) 346
HindIII AAGCTT 2 cut(s) 373, 587
HinfI GANTC 2 cut(s) 264, 671
HpaI GTTAAC 1 cut(s) 346
HphI GGTGA 1 cut(s) 371
Hpy166II GTNNAC 3 cut(s) 339, 346, 583
Hpy188I TCNGA 6 cut(s) 33, 80, 132, 226, 263, 599
Hpy188III TCNNGA 2 cut(s) 520, 638
Hpy8I GTNNAC 3 cut(s) 339, 346, 583
Hpy99I CGWCG 1 cut(s) 213
HpyAV CCTTC 5 cut(s) 195, 242, 517, 521, 604
HpyCH4III ACNGT 2 cut(s) 343, 784
HpyCH4V TGCA 5 cut(s) 40, 148, 487, 667, 730
HpyF10VI GCNNNNNNNGC 2 cut(s) 361, 622
HpyF3I CTNAG 7 cut(s) 86, 260, 312, 606, 621, 639, 759
Hsp92II CATG 5 cut(s) 67, 161, 427, 553, 742
HspAI GCGC 3 cut(s) 68, 70, 232
KspAI GTTAAC 1 cut(s) 346
Kzo9I GATC 3 cut(s) 80, 434, 546
LmnI GCTCC 2 cut(s) 195, 451
Lsp1109I GCAGC 1 cut(s) 499
MaeIII GTNAC 1 cut(s) 319
MalI GATC 3 cut(s) 82, 436, 548
MboI GATC 3 cut(s) 80, 434, 546
MboII GAAGA 5 cut(s) 99, 105, 391, 508, 754
MflI RGATCY 1 cut(s) 434
MhlI GDGCHC 1 cut(s) 294
MlsI TGGCCA 1 cut(s) 565
MluCI AATT 6 cut(s) 120, 126, 326, 451, 501, 683
MluNI TGGCCA 1 cut(s) 565
MlyI GAGTC 2 cut(s) 258, 665
MmeI TCCRAC 2 cut(s) 217, 522
MnlI CCTC 5 cut(s) 39, 278, 394, 571, 690
Mox20I TGGCCA 1 cut(s) 565
MscI TGGCCA 1 cut(s) 565
MseI TTAA 4 cut(s) 23, 345, 408, 510
MslI CAYNNNNRTG 1 cut(s) 202
Msp20I TGGCCA 1 cut(s) 565
MspR9I CCNGG 1 cut(s) 357
MvaI CCWGG 1 cut(s) 357
MvnI CGCG 1 cut(s) 70
MwoI GCNNNNNNNGC 2 cut(s) 361, 622
NdeII GATC 3 cut(s) 80, 434, 546
NlaIII CATG 5 cut(s) 67, 161, 427, 553, 742
NlaIV GGNNCC 2 cut(s) 615, 636
NsbI TGCGCA 1 cut(s) 233
PalAI GGCGCGCC 1 cut(s) 68
PauI GCGCGC 1 cut(s) 68
PkrI GCNGC 2 cut(s) 489, 533
PleI GAGTC 2 cut(s) 258, 665
PpsI GAGTC 2 cut(s) 258, 665
PpuMI RGGWCCY 2 cut(s) 6, 635
Psp124BI GAGCTC 1 cut(s) 294
Psp5II RGGWCCY 2 cut(s) 6, 635
Psp6I CCWGG 1 cut(s) 355
PspGI CCWGG 1 cut(s) 355
PspN4I GGNNCC 2 cut(s) 615, 636
PspPI GGNCC 2 cut(s) 6, 635
PspPPI RGGWCCY 2 cut(s) 6, 635
PsuI RGATCY 1 cut(s) 434
PteI GCGCGC 1 cut(s) 68
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
RseI CAYNNNNRTG 1 cut(s) 202
SacI GAGCTC 1 cut(s) 294
SaqAI TTAA 4 cut(s) 23, 345, 408, 510
SatI GCNGC 2 cut(s) 488, 532
Sau3AI GATC 3 cut(s) 80, 434, 546
Sau96I GGNCC 2 cut(s) 6, 635
SchI GAGTC 2 cut(s) 258, 665
ScrFI CCNGG 1 cut(s) 357
SduI GDGCHC 1 cut(s) 294
SgsI GGCGCGCC 1 cut(s) 68
SinI GGWCC 2 cut(s) 6, 635
SmiMI CAYNNNNRTG 1 cut(s) 202
Sse9I AATT 6 cut(s) 120, 126, 326, 451, 501, 683
SsiI CCGC 3 cut(s) 200, 271, 531
SstI GAGCTC 1 cut(s) 294
StyD4I CCNGG 1 cut(s) 355
StyI CCWWGG 2 cut(s) 243, 472
TaaI ACNGT 2 cut(s) 343, 784
TasI AATT 6 cut(s) 120, 126, 326, 451, 501, 683
TauI GCSGC 1 cut(s) 534
Tru1I TTAA 4 cut(s) 23, 345, 408, 510
Tru9I TTAA 4 cut(s) 23, 345, 408, 510
TseI GCWGC 1 cut(s) 487
TspDTI ATGAA 8 cut(s) 52, 99, 174, 291, 696, 719, 754, 755
VpaK11BI GGWCC 2 cut(s) 6, 635
XapI RAATTY 4 cut(s) 120, 326, 451, 683
XcmI CCANNNNNNNNNTGG 1 cut(s) 148
XmiI GTMKAC 1 cut(s) 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.