FvH4_6g28850

Mitochondrial glycoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0007719
Physical Location & Seq
Reverse (-)
22276176 .. 22279089
2914 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g28850.t2

Sequence Viewer

Length: 753 bp
ATGGCACGCCTAATCCGACCTCTAAGAAGCTCCATTTCTCGCCCCTCTTCTTCTTCCAAAATCCTAATTCCTCAATTACCCAGTTCGCTTCTTGCACCAGAAAAACCAGTCTCCTTCAAAAATCCTTTGCTTGTCAGAACTTACATCTCTGAAATGCGCAAATCGGCTTTCGAAGGCAACATGCTCAGACTCCTACGCAATGAAATCCAATATGAACTCGATCGCTCTCCTCCAAATGAGCCAGCTTCAGAATTCAACTCATTTACAGTTGACAACCGGTCTGGTGAACAATGGATAAGCATGAAGAAAAAATTTGGACATAATGAAGACATAAAGATTGAAGCCACCATGTTTGATGGATCTGTTCCTGTTTCAAAACCTGGAGGTACTGGCAGTGGTGGTGGAGGTGGACAAGATGTGCAACTTCACATTTCTATGATTGTCAATATCTCGAAGGGGAAAGGTTGCAAGACATTGGAGATTATGTGCTCGGTTTGGCCAGATACCATAGAGATCAACAAGCTATTTGTCCGAAAACCGGAGAACGTGTTTGCTCAGCCGTATACGGGTCCTGAATTCAAGGAACTTGATGATGAGTTACAAGACTCGCTTTACGAATTCTTAGAAGCAAGGGGTATAGGTGATGATCTTGCTATTTTCTTGCACTCATATATGAAGAATAAAGATAAAACTGAGTTCATTAATTGGATGGGAACTGTGAAATCATATATTGAAAAGAAGAAGAGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko05168 map05168
Pfam Domains
Protein Families
MAM33

Protein Analysis

251

Amino Acids

28.16

Weight (kDa)

8.38

Isoelectric Point (pI)

54.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAM33 PF02330 65 - 193 8.3e-06 Mitochondrial glycoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 158
AccI GTMKAC 1 cut(s) 563
AclWI GGATC 1 cut(s) 367
AcoI YGGCCR 1 cut(s) 497
AcsI RAATTY 4 cut(s) 251, 311, 575, 617
AcuI CTGAAG 1 cut(s) 231
AfaI GTAC 1 cut(s) 388
AfiI CCNNNNNNNGG 2 cut(s) 538, 566
AflIII ACRYGT 1 cut(s) 546
AgeI ACCGGT 1 cut(s) 276
AgsI TTSAA 6 cut(s) 118, 256, 341, 375, 580, 734
AhdI GACNNNNNGTC 1 cut(s) 277
AjnI CCWGG 1 cut(s) 379
AluBI AGCT 3 cut(s) 30, 245, 523
AluI AGCT 3 cut(s) 30, 245, 523
Alw21I GWGCWC 1 cut(s) 491
Alw26I GTCTC 1 cut(s) 115
AlwI GGATC 1 cut(s) 367
AoxI GGCC 1 cut(s) 497
ApoI RAATTY 4 cut(s) 251, 311, 575, 617
AseI ATTAAT 1 cut(s) 702
AsiGI ACCGGT 1 cut(s) 276
AspLEI GCGC 1 cut(s) 159
AspS9I GGNCC 1 cut(s) 569
AsuHPI GGTGA 2 cut(s) 296, 653
AsuII TTCGAA 1 cut(s) 171
AvaII GGWCC 1 cut(s) 569
BalI TGGCCA 1 cut(s) 499
BbsI GAAGAC 1 cut(s) 333
Bbv12I GWGCWC 1 cut(s) 491
BccI CCATC 2 cut(s) 350, 703
BceAI ACGGC 1 cut(s) 544
BciT130I CCWGG 1 cut(s) 381
BcoDI GTCTC 1 cut(s) 115
BlpI GCTNAGC 1 cut(s) 555
Bme1390I CCNGG 1 cut(s) 381
Bme18I GGWCC 1 cut(s) 569
BmeRI GACNNNNNGTC 1 cut(s) 277
BmgT120I GGNCC 1 cut(s) 569
BmiI GGNNCC 1 cut(s) 570
BmrFI CCNGG 1 cut(s) 381
BmrI ACTGGG 1 cut(s) 75
BmuI ACTGGG 1 cut(s) 75
BpiI GAAGAC 1 cut(s) 333
BpmI CTGGAG 1 cut(s) 402
Bpu1102I GCTNAGC 1 cut(s) 555
Bpu14I TTCGAA 1 cut(s) 171
BsaWI WCCGGW 2 cut(s) 276, 538
BsaXI ACNNNNNCTCC 4 cut(s) 470, 500, 533, 563
Bsc4I CCNNNNNNNGG 2 cut(s) 538, 566
Bse118I RCCGGY 1 cut(s) 276
Bse1I ACTGG 3 cut(s) 81, 107, 394
Bse3DI GCAATG 1 cut(s) 205
BseBI CCWGG 1 cut(s) 381
BseGI GGATG 1 cut(s) 714
BseLI CCNNNNNNNGG 2 cut(s) 538, 566
BseMI GCAATG 1 cut(s) 205
BseMII CTCAG 3 cut(s) 199, 569, 684
BseNI ACTGG 3 cut(s) 81, 107, 394
BseRI GAGGAG 1 cut(s) 219
Bsh1285I CGRYCG 1 cut(s) 223
BshFI GGCC 1 cut(s) 499
BshTI ACCGGT 1 cut(s) 276
BsiEI CGRYCG 1 cut(s) 223
BsiHKAI GWGCWC 1 cut(s) 491
BsiSI CCGG 2 cut(s) 277, 539
BslI CCNNNNNNNGG 2 cut(s) 538, 566
BsmAI GTCTC 1 cut(s) 115
BsnI GGCC 1 cut(s) 499
Bsp119I TTCGAA 1 cut(s) 171
Bsp1286I GDGCHC 1 cut(s) 491
Bsp143I GATC 4 cut(s) 220, 359, 513, 646
Bsp1720I GCTNAGC 1 cut(s) 555
BspANI GGCC 1 cut(s) 499
BspCNI CTCAG 3 cut(s) 198, 568, 685
BspLI GGNNCC 1 cut(s) 570
BspPI GGATC 1 cut(s) 367
BspT104I TTCGAA 1 cut(s) 171
BsrDI GCAATG 1 cut(s) 205
BsrFI RCCGGY 1 cut(s) 276
BsrI ACTGG 3 cut(s) 81, 107, 394
BssAI RCCGGY 1 cut(s) 276
BssMI GATC 4 cut(s) 220, 359, 513, 646
BssNAI GTATAC 1 cut(s) 564
Bst1107I GTATAC 1 cut(s) 564
Bst2UI CCWGG 1 cut(s) 381
Bst4CI ACNGT 2 cut(s) 268, 718
Bst6I CTCTTC 2 cut(s) 52, 737
BstBI TTCGAA 1 cut(s) 171
BstC8I GCNNGC 2 cut(s) 7, 243
BstDEI CTNAG 5 cut(s) 23, 185, 555, 622, 693
BstF5I GGATG 1 cut(s) 714
BstHHI GCGC 1 cut(s) 159
BstKTI GATC 4 cut(s) 223, 362, 516, 649
BstMAI GTCTC 1 cut(s) 115
BstMBI GATC 4 cut(s) 220, 359, 513, 646
BstMCI CGRYCG 1 cut(s) 223
BstNI CCWGG 1 cut(s) 381
BstNSI RCATGY 1 cut(s) 184
BstSCI CCNGG 1 cut(s) 379
BstV2I GAAGAC 1 cut(s) 333
BstX2I RGATCY 1 cut(s) 359
BstYI RGATCY 1 cut(s) 359
BstZ17I GTATAC 1 cut(s) 564
BsuRI GGCC 1 cut(s) 499
BtsCI GGATG 1 cut(s) 714
BtsI GCAGTG 1 cut(s) 400
BtsIMutI CAGTG 1 cut(s) 400
Cac8I GCNNGC 2 cut(s) 7, 243
CfoI GCGC 1 cut(s) 159
Cfr10I RCCGGY 1 cut(s) 276
Cfr13I GGNCC 1 cut(s) 569
Csp6I GTAC 1 cut(s) 387
CspAI ACCGGT 1 cut(s) 276
CspCI CAANNNNNGTGG 2 cut(s) 334, 369
CviAII CATG 3 cut(s) 181, 301, 349
CviJI RGCY 8 cut(s) 30, 167, 241, 245, 344, 499, 523, 559
CviKI_1 RGCY 8 cut(s) 30, 167, 241, 245, 344, 499, 523, 559
CviQI GTAC 1 cut(s) 387
DdeI CTNAG 5 cut(s) 23, 185, 555, 622, 693
DpnI GATC 4 cut(s) 222, 361, 515, 648
DpnII GATC 4 cut(s) 220, 359, 513, 646
DriI GACNNNNNGTC 1 cut(s) 277
EaeI YGGCCR 1 cut(s) 497
Eam1104I CTCTTC 2 cut(s) 52, 737
Eam1105I GACNNNNNGTC 1 cut(s) 277
EarI CTCTTC 2 cut(s) 52, 737
Eco47I GGWCC 1 cut(s) 569
Eco57I CTGAAG 1 cut(s) 231
EcoO109I RGGNCCY 1 cut(s) 569
EcoRI GAATTC 3 cut(s) 251, 575, 617
EcoRII CCWGG 1 cut(s) 379
FaeI CATG 3 cut(s) 184, 304, 352
FalI AAGNNNNNCTT 2 cut(s) 594, 626
FatI CATG 3 cut(s) 180, 300, 348
FblI GTMKAC 1 cut(s) 563
FokI GGATG 1 cut(s) 721
FspI TGCGCA 1 cut(s) 158
GlaI GCGC 1 cut(s) 158
GsuI CTGGAG 1 cut(s) 402
HaeIII GGCC 1 cut(s) 499
HapII CCGG 2 cut(s) 277, 539
HhaI GCGC 1 cut(s) 159
Hin1II CATG 3 cut(s) 184, 304, 352
Hin6I GCGC 1 cut(s) 157
HinP1I GCGC 1 cut(s) 157
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HinfI GANTC 2 cut(s) 189, 605
HpaII CCGG 2 cut(s) 277, 539
HphI GGTGA 2 cut(s) 296, 653
Hpy166II GTNNAC 4 cut(s) 271, 287, 410, 564
Hpy188I TCNGA 6 cut(s) 17, 137, 151, 188, 250, 533
Hpy188III TCNNGA 3 cut(s) 451, 572, 750
Hpy8I GTNNAC 4 cut(s) 271, 287, 410, 564
HpyAV CCTTC 3 cut(s) 124, 167, 448
HpyCH4III ACNGT 2 cut(s) 268, 718
HpyCH4IV ACGT 1 cut(s) 546
HpyCH4V TGCA 4 cut(s) 95, 421, 468, 664
HpyF3I CTNAG 5 cut(s) 23, 185, 555, 622, 693
HpySE526I ACGT 1 cut(s) 546
Hsp92II CATG 3 cut(s) 184, 304, 352
HspAI GCGC 1 cut(s) 157
Kzo9I GATC 4 cut(s) 220, 359, 513, 646
LmnI GCTCC 1 cut(s) 35
MaeII ACGT 1 cut(s) 546
MaeIII GTNAC 1 cut(s) 597
MalI GATC 4 cut(s) 222, 361, 515, 648
MboI GATC 4 cut(s) 220, 359, 513, 646
MboII GAAGA 7 cut(s) 39, 42, 45, 316, 338, 688, 751
MflI RGATCY 1 cut(s) 359
MhlI GDGCHC 1 cut(s) 491
MlsI TGGCCA 1 cut(s) 499
MluCI AATT 7 cut(s) 66, 74, 251, 311, 575, 617, 703
MluNI TGGCCA 1 cut(s) 499
MlyI GAGTC 2 cut(s) 183, 599
MmeI TCCRAC 1 cut(s) 40
MnlI CCTC 6 cut(s) 30, 55, 81, 240, 377, 398
Mox20I TGGCCA 1 cut(s) 499
MscI TGGCCA 1 cut(s) 499
MseI TTAA 1 cut(s) 702
MslI CAYNNNNRTG 1 cut(s) 434
Msp20I TGGCCA 1 cut(s) 499
MspI CCGG 2 cut(s) 277, 539
MspR9I CCNGG 1 cut(s) 381
MvaI CCWGG 1 cut(s) 381
NdeII GATC 4 cut(s) 220, 359, 513, 646
NlaIII CATG 3 cut(s) 184, 304, 352
NlaIV GGNNCC 1 cut(s) 570
NsbI TGCGCA 1 cut(s) 158
NspI RCATGY 1 cut(s) 184
NspV TTCGAA 1 cut(s) 171
PcsI WCGNNNNNNNCGW 1 cut(s) 13
PinAI ACCGGT 1 cut(s) 276
Ple19I CGATCG 1 cut(s) 223
PleI GAGTC 2 cut(s) 183, 599
PpsI GAGTC 2 cut(s) 183, 599
PpuMI RGGWCCY 1 cut(s) 569
PshBI ATTAAT 1 cut(s) 702
Psp5II RGGWCCY 1 cut(s) 569
Psp6I CCWGG 1 cut(s) 379
PspGI CCWGG 1 cut(s) 379
PspN4I GGNNCC 1 cut(s) 570
PspPI GGNCC 1 cut(s) 569
PspPPI RGGWCCY 1 cut(s) 569
PsuI RGATCY 1 cut(s) 359
PvuI CGATCG 1 cut(s) 223
RsaI GTAC 1 cut(s) 388
RsaNI GTAC 1 cut(s) 387
RseI CAYNNNNRTG 1 cut(s) 434
SaqAI TTAA 1 cut(s) 702
Sau3AI GATC 4 cut(s) 220, 359, 513, 646
Sau96I GGNCC 1 cut(s) 569
SchI GAGTC 2 cut(s) 183, 599
ScrFI CCNGG 1 cut(s) 381
SduI GDGCHC 1 cut(s) 491
SfuI TTCGAA 1 cut(s) 171
SinI GGWCC 1 cut(s) 569
SmiMI CAYNNNNRTG 1 cut(s) 434
Sse9I AATT 7 cut(s) 66, 74, 251, 311, 575, 617, 703
StyD4I CCNGG 1 cut(s) 379
TaaI ACNGT 2 cut(s) 268, 718
TaiI ACGT 1 cut(s) 549
TaqI TCGA 3 cut(s) 171, 219, 452
TasI AATT 7 cut(s) 66, 74, 251, 311, 575, 617, 703
Tru1I TTAA 1 cut(s) 702
Tru9I TTAA 1 cut(s) 702
TscAI CASTG 1 cut(s) 400
TspDTI ATGAA 6 cut(s) 216, 228, 317, 339, 688, 689
TspRI CASTG 1 cut(s) 400
VpaK11BI GGWCC 1 cut(s) 569
VspI ATTAAT 1 cut(s) 702
XapI RAATTY 4 cut(s) 251, 311, 575, 617
XceI RCATGY 1 cut(s) 184
XmiI GTMKAC 1 cut(s) 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.