RLG00000019328

Mitochondrial glycoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0007719
Physical Location & Seq
Reverse (-)
50333046 .. 50339009
5964 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019328

Sequence Viewer

Length: 1299 bp
ATGGCGCGCCTAATCCGACCTCTAAGAAACTCCATTTCTTGTCCCTCTTCTTCTTCCAAAATCCTAATTCCCCAGTTACCCAGTTTACGTCTTGCACCAGAAAAACAAGGCCCCCTCTTAAACCCCAATCTTCCATCACCACAGAGCGCAAGAACTTACATCTCTGAAATGCGCAAATCGGCTTTCGAAGGCAACATGCTCAGACTCCTGCGCAATGAAATCCAATATGAACTTGATCGCTCTCCTCCTAATCAGCCAGTTTCAGAATTCAACTCATTTACAGTTGACAACCGGTCTGGCGAGCAATGGATAAGCTTGAAGAGAAAATTTGGACATAATGAAGAGATAAAGATTGAAGCCACCATGTTTGATGGATCTGTTCCTATTACAAAATCCGGAGGCAGTGGTGGTGGTGGAGGCCTTGGAGAAGATGTGCAACTTCACATTACTATGGTTGTCAATATCTCCAAGGAGAAAGGTGGGAATGCATTGGAGATTATGTGCTCGGTATGGCCAGATACTATAGAGATCAACAAGCTATTCATACGAAAACCTGAGAACATGCCATCTCAGCCTTACACGGGTCCTGAATTCAAGGAACTTGATGATGAGTTGCAAGACTCGCTTTACGAATTCTTAGAAGCAAGGGGTATAAATGATGATCTTGCTATTTTCTTGCACTCATATATGAAGAACAAAGATAAAACTGAGTTCATTAGATGGATGGGAACTGTGAAATCATATATTGAAAAGAAGAAGAGTGAAAGGGTCAGGAGGGTCGTAGGTGGGAAGGGCTCAGGCGGCGGAGGCGGGGAGGTTCAAGTGGTGGTCAGGCACCAGCAATTTCAAGGTGGCGCAGTAGCACAACAGCACTCCAGCAGAGTCGATGAGCAATCATCCATCAGCCACCATCACCATCACCGCAACAGCATTCCAACAGAGTCGCTCAAGAGGCGGGAGTGGCTAGCTTCGATAGGAGGCGGCGGAGGAATTGGAAAGCCATCATTCATCAGCCACCACCACTACCACTACCACCACCACCACAACCATAACCACAAGACCCCCTCCCCAAACTTTGTGATTCAAACAACACCCACAAAGCCAAGTCCTTGGGTTTACTCCTTGACCGGGTTTAAAGTTGGGTTCAACTCTGATTCAAAGCAAAGCAAGAAACAAGAGGAGCTACTAGAGAAGATGGTGGAAGAGAATGAGAGGATGGTGGGTTTGGTGATGGAGCTGTTTCATCGGAAAAACAAACTCGGCTGCTGGGATCATTGTCGCAGAGGGTGGAGCAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko05168 map05168
Pfam Domains
Protein Families
MAM33

Protein Analysis

433

Amino Acids

48.84

Weight (kDa)

9.2

Isoelectric Point (pI)

66.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAM33 PF02330 70 - 249 5e-31 Mitochondrial glycoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 173, 212
AccB1I GGYRCC 1 cut(s) 834
AccII CGCG 1 cut(s) 7
AccIII TCCGGA 1 cut(s) 395
AciI CCGC 7 cut(s) 801, 804, 810, 922, 955, 981, 984
AclWI GGATC 2 cut(s) 382, 1278
AcoI YGGCCR 1 cut(s) 512
AcsI RAATTY 4 cut(s) 266, 326, 590, 632
AfiI CCNNNNNNNGG 2 cut(s) 581, 1128
AgeI ACCGGT 1 cut(s) 291
AhdI GACNNNNNGTC 1 cut(s) 292
AluBI AGCT 6 cut(s) 315, 538, 968, 1183, 1237, 1296
AluI AGCT 6 cut(s) 315, 538, 968, 1183, 1237, 1296
Alw21I GWGCWC 1 cut(s) 506
AlwI GGATC 2 cut(s) 382, 1278
Aor13HI TCCGGA 1 cut(s) 395
AoxI GGCC 3 cut(s) 109, 418, 512
ApeKI GCWGC 2 cut(s) 1263, 1293
ApoI RAATTY 4 cut(s) 266, 326, 590, 632
AscI GGCGCGCC 1 cut(s) 5
AsiGI ACCGGT 1 cut(s) 291
AspLEI GCGC 6 cut(s) 7, 9, 149, 174, 213, 857
AspS9I GGNCC 2 cut(s) 110, 584
AsuC2I CCSGG 1 cut(s) 1129
AsuHPI GGTGA 4 cut(s) 129, 905, 911, 1240
AsuII TTCGAA 1 cut(s) 186
AsuNHI GCTAGC 1 cut(s) 964
AvaII GGWCC 1 cut(s) 584
BalI TGGCCA 1 cut(s) 514
BanI GGYRCC 1 cut(s) 834
BanII GRGCYC 1 cut(s) 797
Bbv12I GWGCWC 1 cut(s) 506
BbvI GCAGC 1 cut(s) 1250
BcnI CCSGG 1 cut(s) 1129
BfaI CTAG 3 cut(s) 965, 1187, 1297
BfmI CTRYAG 1 cut(s) 522
BisI GCNGC 4 cut(s) 802, 982, 1264, 1294
BlsI GCNGC 4 cut(s) 803, 983, 1265, 1295
Bme1390I CCNGG 1 cut(s) 1129
Bme18I GGWCC 1 cut(s) 584
BmeRI GACNNNNNGTC 1 cut(s) 292
BmgT120I GGNCC 2 cut(s) 110, 584
BmiI GGNNCC 3 cut(s) 112, 585, 836
BmrFI CCNGG 1 cut(s) 1129
BmrI ACTGGG 2 cut(s) 67, 75
BmtI GCTAGC 1 cut(s) 968
BmuI ACTGGG 2 cut(s) 67, 75
BpmI CTGGAG 1 cut(s) 859
Bpu10I CCTNAGC 1 cut(s) 796
Bpu14I TTCGAA 1 cut(s) 186
BpuEI CTTGAG 1 cut(s) 932
BpuMI CCSGG 1 cut(s) 1129
BsaJI CCNNGG 3 cut(s) 421, 468, 1109
BsaWI WCCGGW 2 cut(s) 291, 395
BsaXI ACNNNNNCTCC 4 cut(s) 417, 447, 485, 515
Bsc4I CCNNNNNNNGG 2 cut(s) 581, 1128
Bse118I RCCGGY 1 cut(s) 291
Bse1I ACTGG 3 cut(s) 73, 81, 257
Bse3DI GCAATG 2 cut(s) 220, 311
BseAI TCCGGA 1 cut(s) 395
BseDI CCNNGG 3 cut(s) 421, 468, 1109
BseGI GGATG 3 cut(s) 729, 896, 1221
BseLI CCNNNNNNNGG 2 cut(s) 581, 1128
BseMI GCAATG 2 cut(s) 220, 311
BseMII CTCAG 5 cut(s) 214, 546, 584, 699, 810
BseNI ACTGG 3 cut(s) 73, 81, 257
BsePI GCGCGC 1 cut(s) 5
BseRI GAGGAG 2 cut(s) 234, 1193
BseXI GCAGC 1 cut(s) 1250
BseYI CCCAGC 1 cut(s) 1266
Bsh1236I CGCG 1 cut(s) 7
BshFI GGCC 3 cut(s) 111, 420, 514
BshNI GGYRCC 1 cut(s) 834
BshTI ACCGGT 1 cut(s) 291
BsiHKAI GWGCWC 1 cut(s) 506
BsiSI CCGG 3 cut(s) 292, 396, 1128
BslFI GGGAC 1 cut(s) 27
BslI CCNNNNNNNGG 2 cut(s) 581, 1128
BsmFI GGGAC 1 cut(s) 27
BsmI GAATGC 2 cut(s) 490, 930
BsnI GGCC 3 cut(s) 111, 420, 514
Bsp119I TTCGAA 1 cut(s) 186
Bsp1286I GDGCHC 2 cut(s) 506, 797
Bsp13I TCCGGA 1 cut(s) 395
Bsp143I GATC 5 cut(s) 235, 374, 528, 661, 1270
BspACI CCGC 7 cut(s) 801, 804, 810, 922, 955, 981, 984
BspANI GGCC 3 cut(s) 111, 420, 514
BspCNI CTCAG 5 cut(s) 213, 547, 583, 700, 809
BspEI TCCGGA 1 cut(s) 395
BspFNI CGCG 1 cut(s) 7
BspLI GGNNCC 3 cut(s) 112, 585, 836
BspOI GCTAGC 1 cut(s) 968
BspPI GGATC 2 cut(s) 382, 1278
BspT104I TTCGAA 1 cut(s) 186
BspT107I GGYRCC 1 cut(s) 834
BsrDI GCAATG 2 cut(s) 220, 311
BsrFI RCCGGY 1 cut(s) 291
BsrI ACTGG 3 cut(s) 73, 81, 257
BssAI RCCGGY 1 cut(s) 291
BssECI CCNNGG 3 cut(s) 421, 468, 1109
BssHII GCGCGC 1 cut(s) 5
BssMI GATC 5 cut(s) 235, 374, 528, 661, 1270
BssT1I CCWWGG 3 cut(s) 421, 468, 1109
Bst4CI ACNGT 2 cut(s) 283, 733
Bst6I CTCTTC 5 cut(s) 52, 314, 336, 752, 1197
BstBI TTCGAA 1 cut(s) 186
BstC8I GCNNGC 3 cut(s) 7, 302, 966
BstDEI CTNAG 7 cut(s) 23, 200, 555, 570, 637, 708, 796
BstF5I GGATG 3 cut(s) 729, 896, 1221
BstFNI CGCG 1 cut(s) 7
BstHHI GCGC 6 cut(s) 7, 9, 149, 174, 213, 857
BstKTI GATC 5 cut(s) 238, 377, 531, 664, 1273
BstMBI GATC 5 cut(s) 235, 374, 528, 661, 1270
BstMWI GCNNNNNNNGC 6 cut(s) 571, 622, 801, 807, 952, 961
BstNSI RCATGY 2 cut(s) 199, 565
BstSCI CCNGG 1 cut(s) 1127
BstSFI CTRYAG 1 cut(s) 522
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 1 cut(s) 1250
BstX2I RGATCY 1 cut(s) 374
BstXI CCANNNNNNTGG 1 cut(s) 1110
BstYI RGATCY 1 cut(s) 374
BsuRI GGCC 3 cut(s) 111, 420, 514
BtsCI GGATG 3 cut(s) 729, 896, 1221
BtsI GCAGTG 1 cut(s) 409
BtsIMutI CAGTG 1 cut(s) 409
Cac8I GCNNGC 3 cut(s) 7, 302, 966
CfoI GCGC 6 cut(s) 7, 9, 149, 174, 213, 857
Cfr10I RCCGGY 1 cut(s) 291
Cfr13I GGNCC 2 cut(s) 110, 584
CspAI ACCGGT 1 cut(s) 291
CspCI CAANNNNNGTGG 2 cut(s) 349, 384
CviAII CATG 3 cut(s) 196, 364, 562
DdeI CTNAG 7 cut(s) 23, 200, 555, 570, 637, 708, 796
DpnI GATC 5 cut(s) 237, 376, 530, 663, 1272
DpnII GATC 5 cut(s) 235, 374, 528, 661, 1270
DraI TTTAAA 1 cut(s) 1135
DriI GACNNNNNGTC 1 cut(s) 292
EaeI YGGCCR 1 cut(s) 512
Eam1104I CTCTTC 5 cut(s) 52, 314, 336, 752, 1197
Eam1105I GACNNNNNGTC 1 cut(s) 292
EarI CTCTTC 5 cut(s) 52, 314, 336, 752, 1197
EciI GGCGGA 2 cut(s) 819, 999
Eco130I CCWWGG 3 cut(s) 421, 468, 1109
Eco147I AGGCCT 1 cut(s) 420
Eco24I GRGCYC 1 cut(s) 797
Eco47I GGWCC 1 cut(s) 584
EcoO109I RGGNCCY 2 cut(s) 110, 584
EcoRI GAATTC 3 cut(s) 266, 590, 632
EcoT14I CCWWGG 3 cut(s) 421, 468, 1109
EcoT22I ATGCAT 1 cut(s) 490
EcoT38I GRGCYC 1 cut(s) 797
ErhI CCWWGG 3 cut(s) 421, 468, 1109
FaeI CATG 3 cut(s) 199, 367, 565
FalI AAGNNNNNCTT 2 cut(s) 609, 641
FaqI GGGAC 1 cut(s) 27
FatI CATG 3 cut(s) 195, 363, 561
FauI CCCGC 2 cut(s) 803, 948
Fnu4HI GCNGC 4 cut(s) 802, 982, 1264, 1294
FokI GGATG 3 cut(s) 736, 883, 1228
FriOI GRGCYC 1 cut(s) 797
Fsp4HI GCNGC 4 cut(s) 802, 982, 1264, 1294
FspBI CTAG 3 cut(s) 965, 1187, 1297
FspI TGCGCA 2 cut(s) 173, 212
GlaI GCGC 6 cut(s) 6, 8, 148, 173, 212, 856
GluI GCNGC 4 cut(s) 802, 982, 1264, 1294
GsaI CCCAGC 1 cut(s) 1270
GsuI CTGGAG 1 cut(s) 859
HaeIII GGCC 3 cut(s) 111, 420, 514
HapII CCGG 3 cut(s) 292, 396, 1128
HhaI GCGC 6 cut(s) 7, 9, 149, 174, 213, 857
Hin1II CATG 3 cut(s) 199, 367, 565
Hin6I GCGC 6 cut(s) 5, 7, 147, 172, 211, 855
HinP1I GCGC 6 cut(s) 5, 7, 147, 172, 211, 855
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HindIII AAGCTT 1 cut(s) 313
HinfI GANTC 6 cut(s) 204, 620, 882, 941, 1081, 1154
HpaII CCGG 3 cut(s) 292, 396, 1128
HphI GGTGA 4 cut(s) 129, 905, 911, 1240
Hpy166II GTNNAC 3 cut(s) 86, 286, 1117
Hpy188I TCNGA 6 cut(s) 17, 166, 203, 265, 1153, 1248
Hpy188III TCNNGA 4 cut(s) 396, 587, 772, 949
Hpy8I GTNNAC 3 cut(s) 86, 286, 1117
HpyAV CCTTC 2 cut(s) 182, 784
HpyCH4III ACNGT 2 cut(s) 283, 733
HpyCH4IV ACGT 1 cut(s) 88
HpyCH4V TGCA 5 cut(s) 95, 436, 488, 616, 679
HpyF10VI GCNNNNNNNGC 6 cut(s) 571, 622, 801, 807, 952, 961
HpyF3I CTNAG 7 cut(s) 23, 200, 555, 570, 637, 708, 796
HpySE526I ACGT 1 cut(s) 88
Hsp92II CATG 3 cut(s) 199, 367, 565
HspAI GCGC 6 cut(s) 5, 7, 147, 172, 211, 855
Kpn2I TCCGGA 1 cut(s) 395
Kzo9I GATC 5 cut(s) 235, 374, 528, 661, 1270
LmnI GCTCC 3 cut(s) 1180, 1234, 1290
Lsp1109I GCAGC 1 cut(s) 1250
MaeI CTAG 3 cut(s) 965, 1187, 1297
MaeII ACGT 1 cut(s) 88
MaeIII GTNAC 1 cut(s) 75
MalI GATC 5 cut(s) 237, 376, 530, 663, 1272
MboI GATC 5 cut(s) 235, 374, 528, 661, 1270
MflI RGATCY 1 cut(s) 374
MhlI GDGCHC 2 cut(s) 506, 797
MlsI TGGCCA 1 cut(s) 514
MluCI AATT 7 cut(s) 66, 266, 326, 590, 632, 842, 990
MluNI TGGCCA 1 cut(s) 514
MlyI GAGTC 4 cut(s) 198, 614, 891, 950
MmeI TCCRAC 2 cut(s) 40, 959
Mox20I TGGCCA 1 cut(s) 514
Mph1103I ATGCAT 1 cut(s) 490
MroI TCCGGA 1 cut(s) 395
MscI TGGCCA 1 cut(s) 514
MseI TTAA 2 cut(s) 119, 1134
MslI CAYNNNNRTG 1 cut(s) 449
Msp20I TGGCCA 1 cut(s) 514
MspI CCGG 3 cut(s) 292, 396, 1128
MspR9I CCNGG 1 cut(s) 1129
Mva1269I GAATGC 2 cut(s) 490, 930
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 6 cut(s) 571, 622, 801, 807, 952, 961
NciI CCSGG 1 cut(s) 1129
NdeII GATC 5 cut(s) 235, 374, 528, 661, 1270
NheI GCTAGC 1 cut(s) 964
NlaIII CATG 3 cut(s) 199, 367, 565
NlaIV GGNNCC 3 cut(s) 112, 585, 836
NmeAIII GCCGAG 1 cut(s) 1239
NsbI TGCGCA 2 cut(s) 173, 212
NsiI ATGCAT 1 cut(s) 490
NspI RCATGY 2 cut(s) 199, 565
NspV TTCGAA 1 cut(s) 186
PalAI GGCGCGCC 1 cut(s) 5
PauI GCGCGC 1 cut(s) 5
PceI AGGCCT 1 cut(s) 420
PctI GAATGC 2 cut(s) 490, 930
PfeI GAWTC 2 cut(s) 1081, 1154
PinAI ACCGGT 1 cut(s) 291
PkrI GCNGC 4 cut(s) 803, 983, 1265, 1295
PleI GAGTC 4 cut(s) 198, 614, 890, 949
PpsI GAGTC 4 cut(s) 198, 614, 890, 949
PpuMI RGGWCCY 1 cut(s) 584
Psp5II RGGWCCY 1 cut(s) 584
PspFI CCCAGC 1 cut(s) 1266
PspN4I GGNNCC 3 cut(s) 112, 585, 836
PspPI GGNCC 2 cut(s) 110, 584
PspPPI RGGWCCY 1 cut(s) 584
PsuI RGATCY 1 cut(s) 374
PteI GCGCGC 1 cut(s) 5
RseI CAYNNNNRTG 1 cut(s) 449
SaqAI TTAA 2 cut(s) 119, 1134
SatI GCNGC 4 cut(s) 802, 982, 1264, 1294
Sau3AI GATC 5 cut(s) 235, 374, 528, 661, 1270
Sau96I GGNCC 2 cut(s) 110, 584
SchI GAGTC 4 cut(s) 198, 614, 891, 950
ScrFI CCNGG 1 cut(s) 1129
SduI GDGCHC 2 cut(s) 506, 797
SfcI CTRYAG 1 cut(s) 522
SfuI TTCGAA 1 cut(s) 186
SgsI GGCGCGCC 1 cut(s) 5
SinI GGWCC 1 cut(s) 584
SmiMI CAYNNNNRTG 1 cut(s) 449
SmlI CTYRAG 1 cut(s) 947
SmoI CTYRAG 1 cut(s) 947
Sse9I AATT 7 cut(s) 66, 266, 326, 590, 632, 842, 990
SseBI AGGCCT 1 cut(s) 420
SsiI CCGC 7 cut(s) 801, 804, 810, 922, 955, 981, 984
SspMI CTAG 3 cut(s) 965, 1187, 1297
StuI AGGCCT 1 cut(s) 420
StyD4I CCNGG 1 cut(s) 1127
StyI CCWWGG 3 cut(s) 421, 468, 1109
TaaI ACNGT 2 cut(s) 283, 733
TaiI ACGT 1 cut(s) 91
TaqI TCGA 3 cut(s) 186, 885, 971
TasI AATT 7 cut(s) 66, 266, 326, 590, 632, 842, 990
TauI GCSGC 2 cut(s) 804, 984
TfiI GAWTC 2 cut(s) 1081, 1154
Tru1I TTAA 2 cut(s) 119, 1134
Tru9I TTAA 2 cut(s) 119, 1134
TscAI CASTG 1 cut(s) 409
TseI GCWGC 2 cut(s) 1263, 1293
TspDTI ATGAA 8 cut(s) 231, 243, 354, 532, 703, 704, 997, 1232
TspRI CASTG 1 cut(s) 409
VpaK11BI GGWCC 1 cut(s) 584
XapI RAATTY 4 cut(s) 266, 326, 590, 632
XceI RCATGY 2 cut(s) 199, 565
XspI CTAG 3 cut(s) 965, 1187, 1297
Zsp2I ATGCAT 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.