Rh2CG347100

Mitochondrial glycoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0007719
Physical Location & Seq
Reverse (-)
46783518 .. 46787401
3884 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG347100.1

Sequence Viewer

Length: 753 bp
ATGGCGCGCCTAATCCGACCTCTAAGAAACTCCATTTCTCGTCCCTCTTCTTCTTCCAAAATCCTAATTCCCCAGTTACCCAGTTTGCGTCTTGCACCAGAAAAACAAGTCCCCAATCTTCCATCACCACAGAGCGCAAGAACTTACATCTCTGAAATGCGCAAATCGGCTTTCGAAGGCAACATGCTCAGGCTCCTGCGCAATGAAATCCAATATGAACTCGATCGCTCTCCTCCTAATCAGCCAGTTTTAGAATTCAACTTATTTACAGTTGACAACCGGTCTGGCGAGCAATGGATAAGCTTGAAGAGAAAATTTGGACATAATGAAGAGATAAAGATTGAAGCCACTATGTTTGATGGATCTGTTCCTATTACAAAATCCGGAGGCGGTGGTGGTGGAGGCCTTGGAGAAGATGTGCAACTTCACATTACTATGGTTGTCAATATCTCCAAGGAGGAAGGTGGCAATGCGTTGGAGATTATGTGCTCGGTATGGCCAGATACTATAGAGATCAACAAGCTATTCATACGAAAACCTGAGAACATGCCAGCTCAGCCCTATACGGGTCCTGAATTCAAGGAACTTGATGATGAGTTGCAAGACTCGCTTTACGAATTCTTAGAAGCAAGGGGTATAAATGATGATCTTGCTATTTTCTTGCACTCATATATGAAGAACAAAGATAAAACTGAGTTCATTAGATGGATGAGAACTGTGAAATCATATATTGAAAAGAAGAAGAGGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko05168 map05168
Pfam Domains
Protein Families
MAM33

Protein Analysis

250

Amino Acids

28.65

Weight (kDa)

7.77

Isoelectric Point (pI)

69.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAM33 PF02330 66 - 244 3.3e-31 Mitochondrial glycoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 161, 200
AccII CGCG 1 cut(s) 7
AccIII TCCGGA 1 cut(s) 383
AciI CCGC 1 cut(s) 390
AclWI GGATC 1 cut(s) 370
AcoI YGGCCR 1 cut(s) 497
AcsI RAATTY 4 cut(s) 254, 314, 575, 617
AfiI CCNNNNNNNGG 1 cut(s) 566
AgeI ACCGGT 1 cut(s) 279
AgsI TTSAA 5 cut(s) 259, 307, 344, 580, 734
AhdI GACNNNNNGTC 1 cut(s) 280
AluBI AGCT 3 cut(s) 303, 523, 554
AluI AGCT 3 cut(s) 303, 523, 554
Alw21I GWGCWC 1 cut(s) 491
AlwI GGATC 1 cut(s) 370
Aor13HI TCCGGA 1 cut(s) 383
AoxI GGCC 2 cut(s) 403, 497
ApoI RAATTY 4 cut(s) 254, 314, 575, 617
AscI GGCGCGCC 1 cut(s) 5
AsiGI ACCGGT 1 cut(s) 279
AspLEI GCGC 5 cut(s) 7, 9, 137, 162, 201
AspS9I GGNCC 1 cut(s) 569
AsuHPI GGTGA 1 cut(s) 117
AsuII TTCGAA 1 cut(s) 174
AvaII GGWCC 1 cut(s) 569
BalI TGGCCA 1 cut(s) 499
Bbv12I GWGCWC 1 cut(s) 491
BccI CCATC 3 cut(s) 130, 353, 699
BfmI CTRYAG 1 cut(s) 507
BlpI GCTNAGC 1 cut(s) 555
Bme18I GGWCC 1 cut(s) 569
BmeRI GACNNNNNGTC 1 cut(s) 280
BmgT120I GGNCC 1 cut(s) 569
BmiI GGNNCC 2 cut(s) 194, 570
BmrI ACTGGG 2 cut(s) 67, 75
BmuI ACTGGG 2 cut(s) 67, 75
Bpu10I CCTNAGC 1 cut(s) 188
Bpu1102I GCTNAGC 1 cut(s) 555
Bpu14I TTCGAA 1 cut(s) 174
BsaJI CCNNGG 2 cut(s) 406, 453
BsaWI WCCGGW 2 cut(s) 279, 383
BsaXI ACNNNNNCTCC 4 cut(s) 402, 432, 470, 500
Bsc4I CCNNNNNNNGG 1 cut(s) 566
Bse118I RCCGGY 1 cut(s) 279
Bse1I ACTGG 3 cut(s) 73, 81, 245
Bse3DI GCAATG 3 cut(s) 208, 299, 475
BseAI TCCGGA 1 cut(s) 383
BseDI CCNNGG 2 cut(s) 406, 453
BseGI GGATG 1 cut(s) 714
BseLI CCNNNNNNNGG 1 cut(s) 566
BseMI GCAATG 3 cut(s) 208, 299, 475
BseMII CTCAG 4 cut(s) 202, 531, 569, 684
BseNI ACTGG 3 cut(s) 73, 81, 245
BsePI GCGCGC 1 cut(s) 5
BseRI GAGGAG 1 cut(s) 222
Bsh1236I CGCG 1 cut(s) 7
Bsh1285I CGRYCG 1 cut(s) 226
BshFI GGCC 2 cut(s) 405, 499
BshTI ACCGGT 1 cut(s) 279
BsiEI CGRYCG 1 cut(s) 226
BsiHKAI GWGCWC 1 cut(s) 491
BsiSI CCGG 2 cut(s) 280, 384
BslFI GGGAC 2 cut(s) 27, 95
BslI CCNNNNNNNGG 1 cut(s) 566
BsmFI GGGAC 2 cut(s) 27, 95
BsnI GGCC 2 cut(s) 405, 499
Bsp119I TTCGAA 1 cut(s) 174
Bsp1286I GDGCHC 1 cut(s) 491
Bsp13I TCCGGA 1 cut(s) 383
Bsp143I GATC 4 cut(s) 223, 362, 513, 646
Bsp1720I GCTNAGC 1 cut(s) 555
BspACI CCGC 1 cut(s) 390
BspANI GGCC 2 cut(s) 405, 499
BspCNI CTCAG 4 cut(s) 201, 532, 568, 685
BspEI TCCGGA 1 cut(s) 383
BspFNI CGCG 1 cut(s) 7
BspLI GGNNCC 2 cut(s) 194, 570
BspPI GGATC 1 cut(s) 370
BspT104I TTCGAA 1 cut(s) 174
BsrDI GCAATG 3 cut(s) 208, 299, 475
BsrFI RCCGGY 1 cut(s) 279
BsrI ACTGG 3 cut(s) 73, 81, 245
BssAI RCCGGY 1 cut(s) 279
BssECI CCNNGG 2 cut(s) 406, 453
BssHII GCGCGC 1 cut(s) 5
BssMI GATC 4 cut(s) 223, 362, 513, 646
BssT1I CCWWGG 2 cut(s) 406, 453
Bst4CI ACNGT 2 cut(s) 271, 718
Bst6I CTCTTC 4 cut(s) 52, 302, 324, 737
BstBI TTCGAA 1 cut(s) 174
BstC8I GCNNGC 3 cut(s) 7, 290, 552
BstDEI CTNAG 6 cut(s) 23, 188, 540, 555, 622, 693
BstF5I GGATG 1 cut(s) 714
BstFNI CGCG 1 cut(s) 7
BstHHI GCGC 5 cut(s) 7, 9, 137, 162, 201
BstKTI GATC 4 cut(s) 226, 365, 516, 649
BstMBI GATC 4 cut(s) 223, 362, 513, 646
BstMCI CGRYCG 1 cut(s) 226
BstMWI GCNNNNNNNGC 2 cut(s) 556, 607
BstNSI RCATGY 2 cut(s) 187, 550
BstSFI CTRYAG 1 cut(s) 507
BstUI CGCG 1 cut(s) 7
BstX2I RGATCY 1 cut(s) 362
BstYI RGATCY 1 cut(s) 362
BsuRI GGCC 2 cut(s) 405, 499
BtsCI GGATG 1 cut(s) 714
Cac8I GCNNGC 3 cut(s) 7, 290, 552
CfoI GCGC 5 cut(s) 7, 9, 137, 162, 201
Cfr10I RCCGGY 1 cut(s) 279
Cfr13I GGNCC 1 cut(s) 569
CseI GACGC 1 cut(s) 77
CspAI ACCGGT 1 cut(s) 279
CspCI CAANNNNNGTGG 2 cut(s) 337, 372
CviAII CATG 2 cut(s) 184, 547
DdeI CTNAG 6 cut(s) 23, 188, 540, 555, 622, 693
DpnI GATC 4 cut(s) 225, 364, 515, 648
DpnII GATC 4 cut(s) 223, 362, 513, 646
DriI GACNNNNNGTC 1 cut(s) 280
EaeI YGGCCR 1 cut(s) 497
Eam1104I CTCTTC 4 cut(s) 52, 302, 324, 737
Eam1105I GACNNNNNGTC 1 cut(s) 280
EarI CTCTTC 4 cut(s) 52, 302, 324, 737
Eco130I CCWWGG 2 cut(s) 406, 453
Eco147I AGGCCT 1 cut(s) 405
Eco47I GGWCC 1 cut(s) 569
EcoO109I RGGNCCY 1 cut(s) 569
EcoRI GAATTC 3 cut(s) 254, 575, 617
EcoT14I CCWWGG 2 cut(s) 406, 453
ErhI CCWWGG 2 cut(s) 406, 453
FaeI CATG 2 cut(s) 187, 550
FalI AAGNNNNNCTT 2 cut(s) 594, 626
FaqI GGGAC 2 cut(s) 27, 95
FatI CATG 2 cut(s) 183, 546
FokI GGATG 1 cut(s) 721
FspI TGCGCA 2 cut(s) 161, 200
GlaI GCGC 5 cut(s) 6, 8, 136, 161, 200
HaeIII GGCC 2 cut(s) 405, 499
HapII CCGG 2 cut(s) 280, 384
HgaI GACGC 1 cut(s) 77
HhaI GCGC 5 cut(s) 7, 9, 137, 162, 201
Hin1II CATG 2 cut(s) 187, 550
Hin6I GCGC 5 cut(s) 5, 7, 135, 160, 199
HinP1I GCGC 5 cut(s) 5, 7, 135, 160, 199
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HindIII AAGCTT 1 cut(s) 301
HinfI GANTC 1 cut(s) 605
HpaII CCGG 2 cut(s) 280, 384
HphI GGTGA 1 cut(s) 117
Hpy166II GTNNAC 1 cut(s) 274
Hpy188I TCNGA 2 cut(s) 17, 154
Hpy188III TCNNGA 2 cut(s) 384, 572
Hpy8I GTNNAC 1 cut(s) 274
HpyAV CCTTC 2 cut(s) 170, 455
HpyCH4III ACNGT 2 cut(s) 271, 718
HpyCH4V TGCA 4 cut(s) 95, 421, 601, 664
HpyF10VI GCNNNNNNNGC 2 cut(s) 556, 607
HpyF3I CTNAG 6 cut(s) 23, 188, 540, 555, 622, 693
Hsp92II CATG 2 cut(s) 187, 550
HspAI GCGC 5 cut(s) 5, 7, 135, 160, 199
Kpn2I TCCGGA 1 cut(s) 383
Kzo9I GATC 4 cut(s) 223, 362, 513, 646
LmnI GCTCC 1 cut(s) 198
MaeIII GTNAC 1 cut(s) 75
MalI GATC 4 cut(s) 225, 364, 515, 648
MboI GATC 4 cut(s) 223, 362, 513, 646
MboII GAAGA 9 cut(s) 39, 42, 45, 110, 319, 341, 425, 688, 751
MflI RGATCY 1 cut(s) 362
MhlI GDGCHC 1 cut(s) 491
MlsI TGGCCA 1 cut(s) 499
MluCI AATT 5 cut(s) 66, 254, 314, 575, 617
MluNI TGGCCA 1 cut(s) 499
MlyI GAGTC 1 cut(s) 599
MmeI TCCRAC 2 cut(s) 40, 456
MnlI CCTC 7 cut(s) 30, 55, 243, 380, 395, 451, 738
Mox20I TGGCCA 1 cut(s) 499
MroI TCCGGA 1 cut(s) 383
MscI TGGCCA 1 cut(s) 499
MslI CAYNNNNRTG 1 cut(s) 434
Msp20I TGGCCA 1 cut(s) 499
MspI CCGG 2 cut(s) 280, 384
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 2 cut(s) 556, 607
NdeII GATC 4 cut(s) 223, 362, 513, 646
NlaIII CATG 2 cut(s) 187, 550
NlaIV GGNNCC 2 cut(s) 194, 570
NsbI TGCGCA 2 cut(s) 161, 200
NspI RCATGY 2 cut(s) 187, 550
NspV TTCGAA 1 cut(s) 174
PalAI GGCGCGCC 1 cut(s) 5
PauI GCGCGC 1 cut(s) 5
PceI AGGCCT 1 cut(s) 405
PinAI ACCGGT 1 cut(s) 279
Ple19I CGATCG 1 cut(s) 226
PleI GAGTC 1 cut(s) 599
PpsI GAGTC 1 cut(s) 599
PpuMI RGGWCCY 1 cut(s) 569
Psp5II RGGWCCY 1 cut(s) 569
PspN4I GGNNCC 2 cut(s) 194, 570
PspPI GGNCC 1 cut(s) 569
PspPPI RGGWCCY 1 cut(s) 569
PsuI RGATCY 1 cut(s) 362
PteI GCGCGC 1 cut(s) 5
PvuI CGATCG 1 cut(s) 226
RseI CAYNNNNRTG 1 cut(s) 434
Sau3AI GATC 4 cut(s) 223, 362, 513, 646
Sau96I GGNCC 1 cut(s) 569
SchI GAGTC 1 cut(s) 599
SduI GDGCHC 1 cut(s) 491
SetI ASST 7 cut(s) 22, 305, 466, 525, 541, 556, 749
SfcI CTRYAG 1 cut(s) 507
SfuI TTCGAA 1 cut(s) 174
SgsI GGCGCGCC 1 cut(s) 5
SinI GGWCC 1 cut(s) 569
SmiMI CAYNNNNRTG 1 cut(s) 434
Sse9I AATT 5 cut(s) 66, 254, 314, 575, 617
SseBI AGGCCT 1 cut(s) 405
SsiI CCGC 1 cut(s) 390
StuI AGGCCT 1 cut(s) 405
StyI CCWWGG 2 cut(s) 406, 453
TaaI ACNGT 2 cut(s) 271, 718
TaqI TCGA 2 cut(s) 174, 222
TasI AATT 5 cut(s) 66, 254, 314, 575, 617
TspDTI ATGAA 6 cut(s) 219, 231, 342, 517, 688, 689
VpaK11BI GGWCC 1 cut(s) 569
XapI RAATTY 4 cut(s) 254, 314, 575, 617
XceI RCATGY 2 cut(s) 187, 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.