AT1G80720

Mitochondrial glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007719
Physical Location & Seq
Forward (+)
30336097 .. 30337716
1620 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G80720.1

Sequence Viewer

Length: 573 bp
ATGCAGAAATCAGCTTTCCAGGGCAACATTTTGCGACTGATCCGTAATGAGATTGAGTACGAACTCGATCACTCGCCTCCTCTTCAGCCTCCTAACAGTTTTGGTCCATTCACTGTGGATGAACGGCCTGGAGAGCAGTGGATTAGCTTGAAAAGGAATTTTGGGGATAAAGAAGACATCAAAATTGAAGCAACTATGTTTGATAGATCAGTTCCCACGTCAAAATCTACCAAAACTGAACCTGAATATATTCTTCACATCACTTTCATTGTCAACATCTCCAAGGCTGGTGCTACTGAAGCTTTAGAGATCATGTGTTCTGCTTGGCCAGATACCATAGAGATATCGAAGCTCTGCATTCGTAGAGGCATCAACACTTCACCCTCTTCCTATGGTGGACCAGAGTTTGAGGAATTAGATGATCAGCTTCAAGACGCACTCTATCAATTTTTAGAGGAAAGAGGTATAAGCGACGAGCTTGCTGTTTTCTTGCATCGGTATATGAAGAACAAAGGTAAAGCTGAGTACGTTAGATGGATGGAGAGCGTTAAATCCTATGTTGAGCAAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko05168 map05168
Pfam Domains
Protein Families
MAM33

Protein Analysis

190

Amino Acids

21.9

Weight (kDa)

5.03

Isoelectric Point (pI)

65.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAM33 PF02330 15 - 187 5.6e-32 Mitochondrial glycoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 34
AcoI YGGCCR 1 cut(s) 326
AcsI RAATTY 1 cut(s) 157
AcuI CTGAAG 2 cut(s) 68, 318
AfaI GTAC 2 cut(s) 59, 527
AgsI TTSAA 3 cut(s) 151, 188, 431
AjiI CACGTC 1 cut(s) 219
AjnI CCWGG 2 cut(s) 18, 127
AluBI AGCT 7 cut(s) 14, 147, 302, 352, 427, 478, 521
AluI AGCT 7 cut(s) 14, 147, 302, 352, 427, 478, 521
AlwI GGATC 1 cut(s) 34
AoxI GGCC 2 cut(s) 125, 326
ApoI RAATTY 1 cut(s) 157
Asp700I GAANNNNTTC 1 cut(s) 249
AspS9I GGNCC 2 cut(s) 104, 398
AsuHPI GGTGA 1 cut(s) 372
AvaII GGWCC 2 cut(s) 104, 398
BalI TGGCCA 1 cut(s) 328
BbsI GAAGAC 1 cut(s) 180
BccI CCATC 2 cut(s) 528, 532
BceAI ACGGC 1 cut(s) 140
BcgI CGANNNNNNTGC 2 cut(s) 461, 495
BciT130I CCWGG 2 cut(s) 20, 129
BclI TGATCA 1 cut(s) 421
Bme1390I CCNGG 2 cut(s) 20, 129
Bme18I GGWCC 2 cut(s) 104, 398
BmgBI CACGTC 1 cut(s) 219
BmgT120I GGNCC 2 cut(s) 104, 398
BmrFI CCNGG 2 cut(s) 20, 129
BmsI GCATC 2 cut(s) 378, 502
BpiI GAAGAC 1 cut(s) 180
BpmI CTGGAG 1 cut(s) 150
BsaJI CCNNGG 2 cut(s) 19, 282
BseBI CCWGG 2 cut(s) 20, 129
BseDI CCNNGG 2 cut(s) 19, 282
BseGI GGATG 2 cut(s) 124, 543
BseMII CTCAG 1 cut(s) 513
BseRI GAGGAG 1 cut(s) 69
BshFI GGCC 2 cut(s) 127, 328
BsmI GAATGC 1 cut(s) 357
BsnI GGCC 2 cut(s) 127, 328
Bsp143I GATC 5 cut(s) 39, 67, 206, 309, 421
BspANI GGCC 2 cut(s) 127, 328
BspCNI CTCAG 1 cut(s) 514
BspPI GGATC 1 cut(s) 34
BssECI CCNNGG 2 cut(s) 19, 282
BssMI GATC 5 cut(s) 39, 67, 206, 309, 421
BssT1I CCWWGG 1 cut(s) 282
Bst2UI CCWGG 2 cut(s) 20, 129
Bst4CI ACNGT 2 cut(s) 98, 115
Bst6I CTCTTC 2 cut(s) 87, 391
BstC8I GCNNGC 1 cut(s) 480
BstDEI CTNAG 1 cut(s) 522
BstF5I GGATG 2 cut(s) 124, 543
BstKTI GATC 5 cut(s) 42, 70, 209, 312, 424
BstMBI GATC 5 cut(s) 39, 67, 206, 309, 421
BstMWI GCNNNNNNNGC 2 cut(s) 133, 299
BstNI CCWGG 2 cut(s) 20, 129
BstSCI CCNGG 2 cut(s) 18, 127
BstV2I GAAGAC 1 cut(s) 180
BsuRI GGCC 2 cut(s) 127, 328
BtrI CACGTC 1 cut(s) 219
BtsCI GGATG 2 cut(s) 124, 543
BtsI GCAGTG 1 cut(s) 143
BtsIMutI CAGTG 2 cut(s) 111, 143
Cac8I GCNNGC 1 cut(s) 480
Cfr13I GGNCC 2 cut(s) 104, 398
CseI GACGC 1 cut(s) 443
Csp6I GTAC 2 cut(s) 58, 526
CviAII CATG 1 cut(s) 313
CviQI GTAC 2 cut(s) 58, 526
DdeI CTNAG 1 cut(s) 522
DpnI GATC 5 cut(s) 41, 69, 208, 311, 423
DpnII GATC 5 cut(s) 39, 67, 206, 309, 421
EaeI YGGCCR 1 cut(s) 326
Eam1104I CTCTTC 2 cut(s) 87, 391
EarI CTCTTC 2 cut(s) 87, 391
Eco130I CCWWGG 1 cut(s) 282
Eco32I GATATC 1 cut(s) 345
Eco47I GGWCC 2 cut(s) 104, 398
Eco57I CTGAAG 2 cut(s) 68, 318
EcoRII CCWGG 2 cut(s) 18, 127
EcoRV GATATC 1 cut(s) 345
EcoT14I CCWWGG 1 cut(s) 282
ErhI CCWWGG 1 cut(s) 282
FaeI CATG 1 cut(s) 316
FaiI YATR 9 cut(s) 197, 249, 314, 338, 393, 467, 501, 503, 558
FatI CATG 1 cut(s) 312
FbaI TGATCA 1 cut(s) 421
FokI GGATG 2 cut(s) 131, 550
GsuI CTGGAG 1 cut(s) 150
HaeIII GGCC 2 cut(s) 127, 328
HgaI GACGC 1 cut(s) 443
Hin1II CATG 1 cut(s) 316
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HindIII AAGCTT 1 cut(s) 300
HphI GGTGA 1 cut(s) 372
Hpy166II GTNNAC 2 cut(s) 274, 398
Hpy188III TCNNGA 1 cut(s) 431
Hpy8I GTNNAC 2 cut(s) 274, 398
Hpy99I CGWCG 1 cut(s) 476
HpyCH4III ACNGT 2 cut(s) 98, 115
HpyCH4IV ACGT 2 cut(s) 218, 528
HpyCH4V TGCA 3 cut(s) 4, 357, 493
HpyF10VI GCNNNNNNNGC 2 cut(s) 133, 299
HpyF3I CTNAG 1 cut(s) 522
HpySE526I ACGT 2 cut(s) 218, 528
Hsp92II CATG 1 cut(s) 316
Ksp22I TGATCA 1 cut(s) 421
Kzo9I GATC 5 cut(s) 39, 67, 206, 309, 421
LpnPI CCDG 8 cut(s) 5, 32, 114, 141, 255, 273, 342, 414
LweI GCATC 2 cut(s) 378, 502
MaeII ACGT 2 cut(s) 218, 528
MalI GATC 5 cut(s) 41, 69, 208, 311, 423
MboI GATC 5 cut(s) 39, 67, 206, 309, 421
MboII GAAGA 5 cut(s) 74, 185, 245, 378, 517
MlsI TGGCCA 1 cut(s) 328
MluCI AATT 4 cut(s) 157, 183, 413, 446
MluNI TGGCCA 1 cut(s) 328
MnlI CCTC 8 cut(s) 87, 90, 99, 359, 394, 403, 448, 455
Mox20I TGGCCA 1 cut(s) 328
MroXI GAANNNNTTC 1 cut(s) 249
MscI TGGCCA 1 cut(s) 328
MseI TTAA 1 cut(s) 549
Msp20I TGGCCA 1 cut(s) 328
MspR9I CCNGG 2 cut(s) 20, 129
Mva1269I GAATGC 1 cut(s) 357
MvaI CCWGG 2 cut(s) 20, 129
MwoI GCNNNNNNNGC 2 cut(s) 133, 299
NdeII GATC 5 cut(s) 39, 67, 206, 309, 421
NlaIII CATG 1 cut(s) 316
PctI GAATGC 1 cut(s) 357
PdmI GAANNNNTTC 1 cut(s) 249
Psp6I CCWGG 2 cut(s) 18, 127
PspGI CCWGG 2 cut(s) 18, 127
PspPI GGNCC 2 cut(s) 104, 398
RsaI GTAC 2 cut(s) 59, 527
RsaNI GTAC 2 cut(s) 58, 526
SaqAI TTAA 1 cut(s) 549
Sau3AI GATC 5 cut(s) 39, 67, 206, 309, 421
Sau96I GGNCC 2 cut(s) 104, 398
ScrFI CCNGG 2 cut(s) 20, 129
SfaNI GCATC 2 cut(s) 378, 502
SinI GGWCC 2 cut(s) 104, 398
Sse9I AATT 4 cut(s) 157, 183, 413, 446
StyD4I CCNGG 2 cut(s) 18, 127
StyI CCWWGG 1 cut(s) 282
TaaI ACNGT 2 cut(s) 98, 115
TaiI ACGT 2 cut(s) 221, 531
TaqI TCGA 2 cut(s) 66, 347
TasI AATT 4 cut(s) 157, 183, 413, 446
Tru1I TTAA 1 cut(s) 549
Tru9I TTAA 1 cut(s) 549
TscAI CASTG 2 cut(s) 118, 143
TspDTI ATGAA 3 cut(s) 135, 256, 518
TspGWI ACGGA 1 cut(s) 32
TspRI CASTG 2 cut(s) 118, 143
VpaK11BI GGWCC 2 cut(s) 104, 398
XapI RAATTY 1 cut(s) 157
XmnI GAANNNNTTC 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.