Rroxscaffold_2G00111210

Mitochondrial glycoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0007719
Physical Location & Seq
Forward (+)
35789042 .. 35790774
1733 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00111210.1

Sequence Viewer

Length: 768 bp
ATGGCGCGCGTAATCCGGCCTCTAAGAAACTCCATTTCTCGACCCTCTTCTTCTTCCAAAATCCTAATTCCCCAGTTACCCAGTTTGCGTCTTGCACCAGAAAAACAAGTCCCCCTCTTAAACCCCAGTCTTCCATCACCACAGAGAGCAAGAACTTACATCTCTGAAATGCGCAAATCGGCTTTCGAAGGCAACATGCTCAGACTCCTGCGCAATGAAATCCAATATGAACTCGATCGCTCTCCTCCTAATCAGCCAGTTTCAGAATTCAACTCATTTACAGTTGACAACCGGTCTGGCGAGCAATGGATAAGCTTGAAGAGAAAATTTGGACATAATGAAGAGATAAAGATTGAAGCCACCATGTTTGATGGATCTGTTCCTATTACAAAATCCGGAGGCGGCGGTGGTGGTGGAGGCCTTGGAGAAGATGTGCAACTTCACATTACTATGGTTGTCAATATCTCCAAGGAGGAAGGTGGCAATGCATTGGAGATTATGTGCTCGGTATGGCCAGATACTATAGAGATCAACAAGCTATTCATACGAAAACCTGAGAACATGCCAGCTCAGCCTTATACGGGTCCTGAATTCAAGGAACTTGATGATGAGTTGCAAGACTCGCTTTACGAATTCTTAGAAGCAAGGGGTATAAATGATGATCTTGCTATTTTCTTGCACTCATATATGAAGAACAAAGATAAAACTGAGTTCATTAGATGGATGGGAACTGTGAAATCATATATTGAAAAGAAGAAGAGGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko05168 map05168
Pfam Domains
Protein Families
MAM33

Protein Analysis

255

Amino Acids

29.02

Weight (kDa)

7.77

Isoelectric Point (pI)

68.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAM33 PF02330 70 - 249 3.8e-31 Mitochondrial glycoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 173, 212
AccII CGCG 2 cut(s) 7, 9
AccIII TCCGGA 1 cut(s) 395
AciI CCGC 2 cut(s) 402, 405
AclWI GGATC 1 cut(s) 382
AcoI YGGCCR 1 cut(s) 512
AcsI RAATTY 4 cut(s) 266, 326, 590, 632
AfiI CCNNNNNNNGG 1 cut(s) 581
AgeI ACCGGT 1 cut(s) 291
AgsI TTSAA 5 cut(s) 271, 319, 356, 595, 749
AhdI GACNNNNNGTC 1 cut(s) 292
AluBI AGCT 3 cut(s) 315, 538, 569
AluI AGCT 3 cut(s) 315, 538, 569
Alw21I GWGCWC 1 cut(s) 506
AlwI GGATC 1 cut(s) 382
Aor13HI TCCGGA 1 cut(s) 395
AoxI GGCC 3 cut(s) 17, 418, 512
ApoI RAATTY 4 cut(s) 266, 326, 590, 632
AsiGI ACCGGT 1 cut(s) 291
AspLEI GCGC 4 cut(s) 7, 9, 174, 213
AspS9I GGNCC 1 cut(s) 584
AsuHPI GGTGA 1 cut(s) 129
AsuII TTCGAA 1 cut(s) 186
AvaII GGWCC 1 cut(s) 584
BalI TGGCCA 1 cut(s) 514
BbsI GAAGAC 1 cut(s) 122
Bbv12I GWGCWC 1 cut(s) 506
BccI CCATC 4 cut(s) 142, 365, 714, 718
BfmI CTRYAG 1 cut(s) 522
BisI GCNGC 1 cut(s) 403
BlpI GCTNAGC 1 cut(s) 570
BlsI GCNGC 1 cut(s) 404
Bme18I GGWCC 1 cut(s) 584
BmeRI GACNNNNNGTC 1 cut(s) 292
BmgT120I GGNCC 1 cut(s) 584
BmiI GGNNCC 1 cut(s) 585
BmrI ACTGGG 3 cut(s) 67, 75, 120
BmuI ACTGGG 3 cut(s) 67, 75, 120
BpiI GAAGAC 1 cut(s) 122
Bpu1102I GCTNAGC 1 cut(s) 570
Bpu14I TTCGAA 1 cut(s) 186
BsaJI CCNNGG 2 cut(s) 421, 468
BsaWI WCCGGW 2 cut(s) 291, 395
BsaXI ACNNNNNCTCC 4 cut(s) 417, 447, 485, 515
Bsc4I CCNNNNNNNGG 1 cut(s) 581
Bse118I RCCGGY 1 cut(s) 291
Bse1I ACTGG 4 cut(s) 73, 81, 126, 257
Bse3DI GCAATG 3 cut(s) 220, 311, 490
BseAI TCCGGA 1 cut(s) 395
BseDI CCNNGG 2 cut(s) 421, 468
BseGI GGATG 1 cut(s) 729
BseLI CCNNNNNNNGG 1 cut(s) 581
BseMI GCAATG 3 cut(s) 220, 311, 490
BseMII CTCAG 4 cut(s) 214, 546, 584, 699
BseNI ACTGG 4 cut(s) 73, 81, 126, 257
BsePI GCGCGC 1 cut(s) 5
BseRI GAGGAG 1 cut(s) 234
Bsh1236I CGCG 2 cut(s) 7, 9
Bsh1285I CGRYCG 1 cut(s) 238
BshFI GGCC 3 cut(s) 19, 420, 514
BshTI ACCGGT 1 cut(s) 291
BsiEI CGRYCG 1 cut(s) 238
BsiHKAI GWGCWC 1 cut(s) 506
BsiSI CCGG 3 cut(s) 16, 292, 396
BslFI GGGAC 1 cut(s) 95
BslI CCNNNNNNNGG 1 cut(s) 581
BsmFI GGGAC 1 cut(s) 95
BsnI GGCC 3 cut(s) 19, 420, 514
Bsp119I TTCGAA 1 cut(s) 186
Bsp1286I GDGCHC 1 cut(s) 506
Bsp13I TCCGGA 1 cut(s) 395
Bsp143I GATC 4 cut(s) 235, 374, 528, 661
Bsp1720I GCTNAGC 1 cut(s) 570
BspACI CCGC 2 cut(s) 402, 405
BspANI GGCC 3 cut(s) 19, 420, 514
BspCNI CTCAG 4 cut(s) 213, 547, 583, 700
BspEI TCCGGA 1 cut(s) 395
BspFNI CGCG 2 cut(s) 7, 9
BspLI GGNNCC 1 cut(s) 585
BspPI GGATC 1 cut(s) 382
BspT104I TTCGAA 1 cut(s) 186
BsrDI GCAATG 3 cut(s) 220, 311, 490
BsrFI RCCGGY 1 cut(s) 291
BsrI ACTGG 4 cut(s) 73, 81, 126, 257
BssAI RCCGGY 1 cut(s) 291
BssECI CCNNGG 2 cut(s) 421, 468
BssHII GCGCGC 1 cut(s) 5
BssMI GATC 4 cut(s) 235, 374, 528, 661
BssT1I CCWWGG 2 cut(s) 421, 468
Bst4CI ACNGT 2 cut(s) 283, 733
Bst6I CTCTTC 4 cut(s) 52, 314, 336, 752
BstBI TTCGAA 1 cut(s) 186
BstC8I GCNNGC 3 cut(s) 7, 302, 567
BstDEI CTNAG 6 cut(s) 23, 200, 555, 570, 637, 708
BstF5I GGATG 1 cut(s) 729
BstFNI CGCG 2 cut(s) 7, 9
BstHHI GCGC 4 cut(s) 7, 9, 174, 213
BstKTI GATC 4 cut(s) 238, 377, 531, 664
BstMBI GATC 4 cut(s) 235, 374, 528, 661
BstMCI CGRYCG 1 cut(s) 238
BstMWI GCNNNNNNNGC 2 cut(s) 571, 622
BstNSI RCATGY 2 cut(s) 199, 565
BstSFI CTRYAG 1 cut(s) 522
BstUI CGCG 2 cut(s) 7, 9
BstV2I GAAGAC 1 cut(s) 122
BstX2I RGATCY 1 cut(s) 374
BstYI RGATCY 1 cut(s) 374
BsuRI GGCC 3 cut(s) 19, 420, 514
BtsCI GGATG 1 cut(s) 729
Cac8I GCNNGC 3 cut(s) 7, 302, 567
CfoI GCGC 4 cut(s) 7, 9, 174, 213
Cfr10I RCCGGY 1 cut(s) 291
Cfr13I GGNCC 1 cut(s) 584
CseI GACGC 1 cut(s) 77
CspAI ACCGGT 1 cut(s) 291
CspCI CAANNNNNGTGG 2 cut(s) 349, 384
CviAII CATG 3 cut(s) 196, 364, 562
DdeI CTNAG 6 cut(s) 23, 200, 555, 570, 637, 708
DpnI GATC 4 cut(s) 237, 376, 530, 663
DpnII GATC 4 cut(s) 235, 374, 528, 661
DriI GACNNNNNGTC 1 cut(s) 292
EaeI YGGCCR 1 cut(s) 512
Eam1104I CTCTTC 4 cut(s) 52, 314, 336, 752
Eam1105I GACNNNNNGTC 1 cut(s) 292
EarI CTCTTC 4 cut(s) 52, 314, 336, 752
Eco130I CCWWGG 2 cut(s) 421, 468
Eco147I AGGCCT 1 cut(s) 420
Eco47I GGWCC 1 cut(s) 584
EcoO109I RGGNCCY 1 cut(s) 584
EcoRI GAATTC 3 cut(s) 266, 590, 632
EcoT14I CCWWGG 2 cut(s) 421, 468
EcoT22I ATGCAT 1 cut(s) 490
ErhI CCWWGG 2 cut(s) 421, 468
FaeI CATG 3 cut(s) 199, 367, 565
FalI AAGNNNNNCTT 2 cut(s) 609, 641
FaqI GGGAC 1 cut(s) 95
FatI CATG 3 cut(s) 195, 363, 561
Fnu4HI GCNGC 1 cut(s) 403
FokI GGATG 1 cut(s) 736
Fsp4HI GCNGC 1 cut(s) 403
FspI TGCGCA 2 cut(s) 173, 212
GlaI GCGC 4 cut(s) 6, 8, 173, 212
GluI GCNGC 1 cut(s) 403
HaeIII GGCC 3 cut(s) 19, 420, 514
HapII CCGG 3 cut(s) 16, 292, 396
HgaI GACGC 1 cut(s) 77
HhaI GCGC 4 cut(s) 7, 9, 174, 213
Hin1II CATG 3 cut(s) 199, 367, 565
Hin6I GCGC 4 cut(s) 5, 7, 172, 211
HinP1I GCGC 4 cut(s) 5, 7, 172, 211
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HindIII AAGCTT 1 cut(s) 313
HinfI GANTC 2 cut(s) 204, 620
HpaII CCGG 3 cut(s) 16, 292, 396
HphI GGTGA 1 cut(s) 129
Hpy166II GTNNAC 1 cut(s) 286
Hpy188I TCNGA 3 cut(s) 166, 203, 265
Hpy188III TCNNGA 3 cut(s) 39, 396, 587
Hpy8I GTNNAC 1 cut(s) 286
HpyAV CCTTC 2 cut(s) 182, 470
HpyCH4III ACNGT 2 cut(s) 283, 733
HpyCH4V TGCA 5 cut(s) 95, 436, 488, 616, 679
HpyF10VI GCNNNNNNNGC 2 cut(s) 571, 622
HpyF3I CTNAG 6 cut(s) 23, 200, 555, 570, 637, 708
Hsp92II CATG 3 cut(s) 199, 367, 565
HspAI GCGC 4 cut(s) 5, 7, 172, 211
Kpn2I TCCGGA 1 cut(s) 395
Kzo9I GATC 4 cut(s) 235, 374, 528, 661
MaeIII GTNAC 1 cut(s) 75
MalI GATC 4 cut(s) 237, 376, 530, 663
MboI GATC 4 cut(s) 235, 374, 528, 661
MboII GAAGA 9 cut(s) 39, 42, 45, 122, 331, 353, 440, 703, 766
MflI RGATCY 1 cut(s) 374
MhlI GDGCHC 1 cut(s) 506
MlsI TGGCCA 1 cut(s) 514
MluCI AATT 5 cut(s) 66, 266, 326, 590, 632
MluNI TGGCCA 1 cut(s) 514
MlyI GAGTC 2 cut(s) 198, 614
MnlI CCTC 8 cut(s) 30, 55, 125, 255, 392, 410, 466, 753
Mox20I TGGCCA 1 cut(s) 514
Mph1103I ATGCAT 1 cut(s) 490
MroI TCCGGA 1 cut(s) 395
MscI TGGCCA 1 cut(s) 514
MseI TTAA 1 cut(s) 119
MslI CAYNNNNRTG 1 cut(s) 449
Msp20I TGGCCA 1 cut(s) 514
MspI CCGG 3 cut(s) 16, 292, 396
MvnI CGCG 2 cut(s) 7, 9
MwoI GCNNNNNNNGC 2 cut(s) 571, 622
NdeII GATC 4 cut(s) 235, 374, 528, 661
NlaIII CATG 3 cut(s) 199, 367, 565
NlaIV GGNNCC 1 cut(s) 585
NsbI TGCGCA 2 cut(s) 173, 212
NsiI ATGCAT 1 cut(s) 490
NspI RCATGY 2 cut(s) 199, 565
NspV TTCGAA 1 cut(s) 186
PauI GCGCGC 1 cut(s) 5
PceI AGGCCT 1 cut(s) 420
PinAI ACCGGT 1 cut(s) 291
PkrI GCNGC 1 cut(s) 404
Ple19I CGATCG 1 cut(s) 238
PleI GAGTC 2 cut(s) 198, 614
PpsI GAGTC 2 cut(s) 198, 614
PpuMI RGGWCCY 1 cut(s) 584
Psp5II RGGWCCY 1 cut(s) 584
PspN4I GGNNCC 1 cut(s) 585
PspPI GGNCC 1 cut(s) 584
PspPPI RGGWCCY 1 cut(s) 584
PsuI RGATCY 1 cut(s) 374
PteI GCGCGC 1 cut(s) 5
PvuI CGATCG 1 cut(s) 238
RseI CAYNNNNRTG 1 cut(s) 449
SaqAI TTAA 1 cut(s) 119
SatI GCNGC 1 cut(s) 403
Sau3AI GATC 4 cut(s) 235, 374, 528, 661
Sau96I GGNCC 1 cut(s) 584
SchI GAGTC 2 cut(s) 198, 614
SduI GDGCHC 1 cut(s) 506
SetI ASST 6 cut(s) 317, 481, 540, 556, 571, 764
SfcI CTRYAG 1 cut(s) 522
SfuI TTCGAA 1 cut(s) 186
SinI GGWCC 1 cut(s) 584
SmiMI CAYNNNNRTG 1 cut(s) 449
Sse9I AATT 5 cut(s) 66, 266, 326, 590, 632
SseBI AGGCCT 1 cut(s) 420
SsiI CCGC 2 cut(s) 402, 405
StuI AGGCCT 1 cut(s) 420
StyI CCWWGG 2 cut(s) 421, 468
TaaI ACNGT 2 cut(s) 283, 733
TaqI TCGA 3 cut(s) 40, 186, 234
TasI AATT 5 cut(s) 66, 266, 326, 590, 632
TauI GCSGC 1 cut(s) 405
Tru1I TTAA 1 cut(s) 119
Tru9I TTAA 1 cut(s) 119
TspDTI ATGAA 6 cut(s) 231, 243, 354, 532, 703, 704
VpaK11BI GGWCC 1 cut(s) 584
XapI RAATTY 4 cut(s) 266, 326, 590, 632
XceI RCATGY 2 cut(s) 199, 565
Zsp2I ATGCAT 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.