RchiOBHm_Chr2g0133381

Mitochondrial glycoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0007719
Physical Location & Seq
Reverse (-)
50125884 .. 50129528
3645 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50456

Sequence Viewer

Length: 768 bp
ATGGCTCGCCTAATCCGACCTCTAAGAAACTCCATTTCTCGTCCCTCTTCTTCTTCTTCCAAAATCCTAATTCCCCAGTTACCCAGTTTGCGTCTTGCACCAGAAAAACAAGGCCCCCTCTTAAACCCCAATCTTCCATCACCACAGAGCGCAAGAACTTACATCTCTGAAATGCGCAAATCGGCTTTCGAAGGCAACATGCTCAGACTCCTGCGCAATGAAATCCAATATGAACTCGATCGCTCTCCTCCTAACCAGCCAGTTTTAGAATTCAACTTATTTACAGTTGACAACCGGTCTGGCGAGCAATGGATAAGCTTGAAGAGAAAATTTGGACATAATGAAGAGATAAAGATTGAAGCCACCATGTTTGATGGATCTGTTCCTATTACAAAATCCGGAGGCGGTGGTGGTGGAGGCCTTGGAGAAGATGTGCAACTTCACATTACTATGGTTGTCAATATCTCCAAGGACGAAGGTGGCAATGCGTTGGAGATTATGTGCTCGGTATGGCCAGATACTATAGAGATCAACAAGCTATTCATACGAAAACCTGAGAACATGCCAGCTCAGCCCTATACGGGTCCTGAATTCAAGGAACTTGATGATGAGTTGCAAGACTCGCTTTACGAATTCTTAGAAGCAAGGGGTATAAATGATGATCTTGCTATTTTCTTGCACTCATATATGAAGAACAAAGATAAAACTGAGTTCATTAGATGGATGAGAACTGTGAAATCATATATTGAAAAGAAGAAGAGGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko05168 map05168
Pfam Domains
Protein Families
MAM33

Protein Analysis

255

Amino Acids

29.12

Weight (kDa)

7.77

Isoelectric Point (pI)

67.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAM33 PF02330 71 - 249 4.3e-31 Mitochondrial glycoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 176, 215
AccIII TCCGGA 1 cut(s) 398
AciI CCGC 1 cut(s) 405
AclWI GGATC 1 cut(s) 385
AcoI YGGCCR 1 cut(s) 512
AcsI RAATTY 4 cut(s) 269, 329, 590, 632
AfiI CCNNNNNNNGG 1 cut(s) 581
AgeI ACCGGT 1 cut(s) 294
AgsI TTSAA 5 cut(s) 274, 322, 359, 595, 749
AhdI GACNNNNNGTC 1 cut(s) 295
AluBI AGCT 3 cut(s) 318, 538, 569
AluI AGCT 3 cut(s) 318, 538, 569
Alw21I GWGCWC 1 cut(s) 506
AlwI GGATC 1 cut(s) 385
Aor13HI TCCGGA 1 cut(s) 398
AoxI GGCC 3 cut(s) 112, 418, 512
ApoI RAATTY 4 cut(s) 269, 329, 590, 632
AsiGI ACCGGT 1 cut(s) 294
AspLEI GCGC 3 cut(s) 152, 177, 216
AspS9I GGNCC 2 cut(s) 113, 584
AsuHPI GGTGA 1 cut(s) 132
AsuII TTCGAA 1 cut(s) 189
AvaII GGWCC 1 cut(s) 584
BalI TGGCCA 1 cut(s) 514
Bbv12I GWGCWC 1 cut(s) 506
BccI CCATC 3 cut(s) 145, 368, 714
BfmI CTRYAG 1 cut(s) 522
BlpI GCTNAGC 1 cut(s) 570
Bme18I GGWCC 1 cut(s) 584
BmeRI GACNNNNNGTC 1 cut(s) 295
BmgT120I GGNCC 2 cut(s) 113, 584
BmiI GGNNCC 2 cut(s) 115, 585
BmrI ACTGGG 2 cut(s) 70, 78
BmuI ACTGGG 2 cut(s) 70, 78
Bpu1102I GCTNAGC 1 cut(s) 570
Bpu14I TTCGAA 1 cut(s) 189
BsaJI CCNNGG 2 cut(s) 421, 468
BsaWI WCCGGW 2 cut(s) 294, 398
BsaXI ACNNNNNCTCC 4 cut(s) 417, 447, 485, 515
Bsc4I CCNNNNNNNGG 1 cut(s) 581
Bse118I RCCGGY 1 cut(s) 294
Bse1I ACTGG 3 cut(s) 76, 84, 260
Bse3DI GCAATG 3 cut(s) 223, 314, 490
BseAI TCCGGA 1 cut(s) 398
BseDI CCNNGG 2 cut(s) 421, 468
BseGI GGATG 1 cut(s) 729
BseLI CCNNNNNNNGG 1 cut(s) 581
BseMI GCAATG 3 cut(s) 223, 314, 490
BseMII CTCAG 4 cut(s) 217, 546, 584, 699
BseNI ACTGG 3 cut(s) 76, 84, 260
BseRI GAGGAG 1 cut(s) 237
Bsh1285I CGRYCG 1 cut(s) 241
BshFI GGCC 3 cut(s) 114, 420, 514
BshTI ACCGGT 1 cut(s) 294
BsiEI CGRYCG 1 cut(s) 241
BsiHKAI GWGCWC 1 cut(s) 506
BsiSI CCGG 2 cut(s) 295, 399
BslFI GGGAC 1 cut(s) 27
BslI CCNNNNNNNGG 1 cut(s) 581
BsmFI GGGAC 1 cut(s) 27
BsnI GGCC 3 cut(s) 114, 420, 514
Bsp119I TTCGAA 1 cut(s) 189
Bsp1286I GDGCHC 1 cut(s) 506
Bsp13I TCCGGA 1 cut(s) 398
Bsp143I GATC 4 cut(s) 238, 377, 528, 661
Bsp1720I GCTNAGC 1 cut(s) 570
BspACI CCGC 1 cut(s) 405
BspANI GGCC 3 cut(s) 114, 420, 514
BspCNI CTCAG 4 cut(s) 216, 547, 583, 700
BspEI TCCGGA 1 cut(s) 398
BspLI GGNNCC 2 cut(s) 115, 585
BspPI GGATC 1 cut(s) 385
BspT104I TTCGAA 1 cut(s) 189
BsrDI GCAATG 3 cut(s) 223, 314, 490
BsrFI RCCGGY 1 cut(s) 294
BsrI ACTGG 3 cut(s) 76, 84, 260
BssAI RCCGGY 1 cut(s) 294
BssECI CCNNGG 2 cut(s) 421, 468
BssMI GATC 4 cut(s) 238, 377, 528, 661
BssT1I CCWWGG 2 cut(s) 421, 468
Bst4CI ACNGT 2 cut(s) 286, 733
Bst6I CTCTTC 4 cut(s) 52, 317, 339, 752
BstBI TTCGAA 1 cut(s) 189
BstC8I GCNNGC 3 cut(s) 7, 305, 567
BstDEI CTNAG 6 cut(s) 23, 203, 555, 570, 637, 708
BstF5I GGATG 1 cut(s) 729
BstHHI GCGC 3 cut(s) 152, 177, 216
BstKTI GATC 4 cut(s) 241, 380, 531, 664
BstMBI GATC 4 cut(s) 238, 377, 528, 661
BstMCI CGRYCG 1 cut(s) 241
BstMWI GCNNNNNNNGC 2 cut(s) 571, 622
BstNSI RCATGY 2 cut(s) 202, 565
BstSFI CTRYAG 1 cut(s) 522
BstX2I RGATCY 1 cut(s) 377
BstYI RGATCY 1 cut(s) 377
BsuRI GGCC 3 cut(s) 114, 420, 514
BtsCI GGATG 1 cut(s) 729
Cac8I GCNNGC 3 cut(s) 7, 305, 567
CfoI GCGC 3 cut(s) 152, 177, 216
Cfr10I RCCGGY 1 cut(s) 294
Cfr13I GGNCC 2 cut(s) 113, 584
CseI GACGC 1 cut(s) 80
CspAI ACCGGT 1 cut(s) 294
CspCI CAANNNNNGTGG 2 cut(s) 352, 387
CviAII CATG 3 cut(s) 199, 367, 562
DdeI CTNAG 6 cut(s) 23, 203, 555, 570, 637, 708
DpnI GATC 4 cut(s) 240, 379, 530, 663
DpnII GATC 4 cut(s) 238, 377, 528, 661
DriI GACNNNNNGTC 1 cut(s) 295
EaeI YGGCCR 1 cut(s) 512
Eam1104I CTCTTC 4 cut(s) 52, 317, 339, 752
Eam1105I GACNNNNNGTC 1 cut(s) 295
EarI CTCTTC 4 cut(s) 52, 317, 339, 752
Eco130I CCWWGG 2 cut(s) 421, 468
Eco147I AGGCCT 1 cut(s) 420
Eco47I GGWCC 1 cut(s) 584
EcoO109I RGGNCCY 2 cut(s) 113, 584
EcoRI GAATTC 3 cut(s) 269, 590, 632
EcoT14I CCWWGG 2 cut(s) 421, 468
ErhI CCWWGG 2 cut(s) 421, 468
FaeI CATG 3 cut(s) 202, 370, 565
FalI AAGNNNNNCTT 2 cut(s) 609, 641
FaqI GGGAC 1 cut(s) 27
FatI CATG 3 cut(s) 198, 366, 561
FokI GGATG 1 cut(s) 736
FspI TGCGCA 2 cut(s) 176, 215
GlaI GCGC 3 cut(s) 151, 176, 215
HaeIII GGCC 3 cut(s) 114, 420, 514
HapII CCGG 2 cut(s) 295, 399
HgaI GACGC 1 cut(s) 80
HhaI GCGC 3 cut(s) 152, 177, 216
Hin1II CATG 3 cut(s) 202, 370, 565
Hin6I GCGC 3 cut(s) 150, 175, 214
HinP1I GCGC 3 cut(s) 150, 175, 214
HincII GTYRAC 1 cut(s) 289
HindII GTYRAC 1 cut(s) 289
HindIII AAGCTT 1 cut(s) 316
HinfI GANTC 2 cut(s) 207, 620
HpaII CCGG 2 cut(s) 295, 399
HphI GGTGA 1 cut(s) 132
Hpy166II GTNNAC 1 cut(s) 289
Hpy188I TCNGA 3 cut(s) 17, 169, 206
Hpy188III TCNNGA 2 cut(s) 399, 587
Hpy8I GTNNAC 1 cut(s) 289
HpyAV CCTTC 2 cut(s) 185, 470
HpyCH4III ACNGT 2 cut(s) 286, 733
HpyCH4V TGCA 4 cut(s) 98, 436, 616, 679
HpyF10VI GCNNNNNNNGC 2 cut(s) 571, 622
HpyF3I CTNAG 6 cut(s) 23, 203, 555, 570, 637, 708
Hsp92II CATG 3 cut(s) 202, 370, 565
HspAI GCGC 3 cut(s) 150, 175, 214
Kpn2I TCCGGA 1 cut(s) 398
Kzo9I GATC 4 cut(s) 238, 377, 528, 661
MaeIII GTNAC 1 cut(s) 78
MalI GATC 4 cut(s) 240, 379, 530, 663
MboI GATC 4 cut(s) 238, 377, 528, 661
MflI RGATCY 1 cut(s) 377
MhlI GDGCHC 1 cut(s) 506
MlsI TGGCCA 1 cut(s) 514
MluCI AATT 5 cut(s) 69, 269, 329, 590, 632
MluNI TGGCCA 1 cut(s) 514
MlyI GAGTC 2 cut(s) 201, 614
MmeI TCCRAC 2 cut(s) 40, 471
MnlI CCTC 7 cut(s) 30, 55, 128, 258, 395, 410, 753
Mox20I TGGCCA 1 cut(s) 514
MroI TCCGGA 1 cut(s) 398
MscI TGGCCA 1 cut(s) 514
MseI TTAA 1 cut(s) 122
MslI CAYNNNNRTG 1 cut(s) 449
Msp20I TGGCCA 1 cut(s) 514
MspI CCGG 2 cut(s) 295, 399
MwoI GCNNNNNNNGC 2 cut(s) 571, 622
NdeII GATC 4 cut(s) 238, 377, 528, 661
NlaIII CATG 3 cut(s) 202, 370, 565
NlaIV GGNNCC 2 cut(s) 115, 585
NsbI TGCGCA 2 cut(s) 176, 215
NspI RCATGY 2 cut(s) 202, 565
NspV TTCGAA 1 cut(s) 189
PceI AGGCCT 1 cut(s) 420
PcsI WCGNNNNNNNCGW 1 cut(s) 13
PinAI ACCGGT 1 cut(s) 294
Ple19I CGATCG 1 cut(s) 241
PleI GAGTC 2 cut(s) 201, 614
PpsI GAGTC 2 cut(s) 201, 614
PpuMI RGGWCCY 1 cut(s) 584
Psp5II RGGWCCY 1 cut(s) 584
PspN4I GGNNCC 2 cut(s) 115, 585
PspPI GGNCC 2 cut(s) 113, 584
PspPPI RGGWCCY 1 cut(s) 584
PsuI RGATCY 1 cut(s) 377
PvuI CGATCG 1 cut(s) 241
RseI CAYNNNNRTG 1 cut(s) 449
SaqAI TTAA 1 cut(s) 122
Sau3AI GATC 4 cut(s) 238, 377, 528, 661
Sau96I GGNCC 2 cut(s) 113, 584
SchI GAGTC 2 cut(s) 201, 614
SduI GDGCHC 1 cut(s) 506
SetI ASST 7 cut(s) 22, 320, 481, 540, 556, 571, 764
SfcI CTRYAG 1 cut(s) 522
SfuI TTCGAA 1 cut(s) 189
SinI GGWCC 1 cut(s) 584
SmiMI CAYNNNNRTG 1 cut(s) 449
Sse9I AATT 5 cut(s) 69, 269, 329, 590, 632
SseBI AGGCCT 1 cut(s) 420
SsiI CCGC 1 cut(s) 405
StuI AGGCCT 1 cut(s) 420
StyI CCWWGG 2 cut(s) 421, 468
TaaI ACNGT 2 cut(s) 286, 733
TaqI TCGA 2 cut(s) 189, 237
TasI AATT 5 cut(s) 69, 269, 329, 590, 632
Tru1I TTAA 1 cut(s) 122
Tru9I TTAA 1 cut(s) 122
TspDTI ATGAA 6 cut(s) 234, 246, 357, 532, 703, 704
VpaK11BI GGWCC 1 cut(s) 584
XapI RAATTY 4 cut(s) 269, 329, 590, 632
XceI RCATGY 2 cut(s) 202, 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.