Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006616.1

Orthogroup ID

OG0007719

Physical Location & Seq

Genomic Coordinates Reverse (-)

116 .. 1468

Gene Structure 1353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006616.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

atggcgcgcctaatccgacctctaagaaactccatttctcgtccctcttcttcttcttccaaaatcctaattccccagttacccagtttgcgtcttgcaccagaaaaacaagtccccctcttaaaccccaatcttccatcaccacagagcgcaagaacttacatctctgaaatgcgcaaatcggctttcgaaggcaacatgctcagactcctgcgcaatgaaatccaatatgaactcgatcgctctcctcctaaccagccagttttagaattcaacttatttacagttgacaaccggtctggcgagcaatggataagcttgaagagaaaatttggacataatgaagagataaagattgaagccaccatgtttgatggatctgttcctattacaaaatccggaggcagtggtggtggtggtggtggaggccttggagaagatgtgcaacttcacattactatggttgtcaatatctccaagaaggaaggtggcaatgcgttggagattatgtgctcggtatggccagatactatagagatcaacaagctattcatacaaaaacctgagaacatgccagctcagccctatacgggtcctgaattcaagtatgagcacatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko05168 map05168

Pfam Domains

Protein Families

MAM33

Protein Analysis

206

Amino Acids

22.97

Weight (kDa)

8.66

Isoelectric Point (pI)

70.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15870 AT1G80720 AT1G80720
fragaria_vesca	FvH4_6g28850 FvH4_6g28850
malus_domestica	MD17G1221200.v1.1
prunus_persica	Prupe.3G096300_v2.0.a1 Prupe.3G096300_v2.0.a1
pyrus_communis	pycom09g14170 pycom17g22560
rosa_chinensis	RchiOBHm_Chr2g0133381
rosa_laevigata	RLG00000019328
rosa_multiflora	Rmu_sc0003874.1_g000009 Rmu_sc0006616.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111210
rosa_rugosa	Rorug02G0311200 Rorug02G0311300 Rorug02G0311400.1 Rorug02G0311500
rosa_samantha	Rh2AG363900 Rh2BG369800 Rh2CG347100 Rh2DG386600
rosa_wichuraiana	Rw2G029620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	176, 215
AccII	CGCG	1 cut(s)	7
AccIII	TCCGGA	1 cut(s)	398
AclWI	GGATC	1 cut(s)	385
AcoI	YGGCCR	1 cut(s)	521
AcsI	RAATTY	3 cut(s)	269, 329, 599
AfiI	CCNNNNNNNGG	1 cut(s)	590
AgeI	ACCGGT	1 cut(s)	294
AgsI	TTSAA	4 cut(s)	274, 322, 359, 604
AhdI	GACNNNNNGTC	1 cut(s)	295
AluBI	AGCT	3 cut(s)	318, 547, 578
AluI	AGCT	3 cut(s)	318, 547, 578
Alw21I	GWGCWC	2 cut(s)	515, 615
AlwI	GGATC	1 cut(s)	385
Aor13HI	TCCGGA	1 cut(s)	398
AoxI	GGCC	2 cut(s)	427, 521
ApoI	RAATTY	3 cut(s)	269, 329, 599
AscI	GGCGCGCC	1 cut(s)	5
AsiGI	ACCGGT	1 cut(s)	294
AspLEI	GCGC	5 cut(s)	7, 9, 152, 177, 216
AspS9I	GGNCC	1 cut(s)	593
AsuHPI	GGTGA	1 cut(s)	132
AsuII	TTCGAA	1 cut(s)	189
AvaII	GGWCC	1 cut(s)	593
BalI	TGGCCA	1 cut(s)	523
Bbv12I	GWGCWC	2 cut(s)	515, 615
BccI	CCATC	2 cut(s)	145, 368
BfmI	CTRYAG	1 cut(s)	531
BlpI	GCTNAGC	1 cut(s)	579
Bme18I	GGWCC	1 cut(s)	593
BmeRI	GACNNNNNGTC	1 cut(s)	295
BmgT120I	GGNCC	1 cut(s)	593
BmiI	GGNNCC	1 cut(s)	594
BmrI	ACTGGG	2 cut(s)	70, 78
BmuI	ACTGGG	2 cut(s)	70, 78
Bpu1102I	GCTNAGC	1 cut(s)	579
Bpu14I	TTCGAA	1 cut(s)	189
BsaJI	CCNNGG	1 cut(s)	430
BsaWI	WCCGGW	2 cut(s)	294, 398
BsaXI	ACNNNNNCTCC	4 cut(s)	426, 456, 494, 524
Bsc4I	CCNNNNNNNGG	1 cut(s)	590
Bse118I	RCCGGY	1 cut(s)	294
Bse1I	ACTGG	3 cut(s)	76, 84, 260
Bse3DI	GCAATG	3 cut(s)	223, 314, 499
BseAI	TCCGGA	1 cut(s)	398
BseDI	CCNNGG	1 cut(s)	430
BseLI	CCNNNNNNNGG	1 cut(s)	590
BseMI	GCAATG	3 cut(s)	223, 314, 499
BseMII	CTCAG	3 cut(s)	217, 555, 593
BseNI	ACTGG	3 cut(s)	76, 84, 260
BsePI	GCGCGC	1 cut(s)	5
BseRI	GAGGAG	1 cut(s)	237
Bsh1236I	CGCG	1 cut(s)	7
Bsh1285I	CGRYCG	1 cut(s)	241
BshFI	GGCC	2 cut(s)	429, 523
BshTI	ACCGGT	1 cut(s)	294
BsiEI	CGRYCG	1 cut(s)	241
BsiHKAI	GWGCWC	2 cut(s)	515, 615
BsiSI	CCGG	2 cut(s)	295, 399
BslFI	GGGAC	2 cut(s)	27, 98
BslI	CCNNNNNNNGG	1 cut(s)	590
BsmFI	GGGAC	2 cut(s)	27, 98
BsnI	GGCC	2 cut(s)	429, 523
Bsp119I	TTCGAA	1 cut(s)	189
Bsp1286I	GDGCHC	2 cut(s)	515, 615
Bsp13I	TCCGGA	1 cut(s)	398
Bsp143I	GATC	3 cut(s)	238, 377, 537
Bsp1720I	GCTNAGC	1 cut(s)	579
BspANI	GGCC	2 cut(s)	429, 523
BspCNI	CTCAG	3 cut(s)	216, 556, 592
BspEI	TCCGGA	1 cut(s)	398
BspFNI	CGCG	1 cut(s)	7
BspLI	GGNNCC	1 cut(s)	594
BspPI	GGATC	1 cut(s)	385
BspT104I	TTCGAA	1 cut(s)	189
BsrDI	GCAATG	3 cut(s)	223, 314, 499
BsrFI	RCCGGY	1 cut(s)	294
BsrI	ACTGG	3 cut(s)	76, 84, 260
BssAI	RCCGGY	1 cut(s)	294
BssECI	CCNNGG	1 cut(s)	430
BssHII	GCGCGC	1 cut(s)	5
BssMI	GATC	3 cut(s)	238, 377, 537
BssT1I	CCWWGG	1 cut(s)	430
Bst4CI	ACNGT	1 cut(s)	286
Bst6I	CTCTTC	3 cut(s)	52, 317, 339
BstBI	TTCGAA	1 cut(s)	189
BstC8I	GCNNGC	3 cut(s)	7, 305, 576
BstDEI	CTNAG	4 cut(s)	23, 203, 564, 579
BstFNI	CGCG	1 cut(s)	7
BstHHI	GCGC	5 cut(s)	7, 9, 152, 177, 216
BstKTI	GATC	3 cut(s)	241, 380, 540
BstMBI	GATC	3 cut(s)	238, 377, 537
BstMCI	CGRYCG	1 cut(s)	241
BstMWI	GCNNNNNNNGC	1 cut(s)	580
BstNSI	RCATGY	2 cut(s)	202, 574
BstSFI	CTRYAG	1 cut(s)	531
BstUI	CGCG	1 cut(s)	7
BstX2I	RGATCY	1 cut(s)	377
BstYI	RGATCY	1 cut(s)	377
BsuRI	GGCC	2 cut(s)	429, 523
BtsI	GCAGTG	1 cut(s)	412
BtsIMutI	CAGTG	1 cut(s)	412
Cac8I	GCNNGC	3 cut(s)	7, 305, 576
CfoI	GCGC	5 cut(s)	7, 9, 152, 177, 216
Cfr10I	RCCGGY	1 cut(s)	294
Cfr13I	GGNCC	1 cut(s)	593
CseI	GACGC	1 cut(s)	80
CspAI	ACCGGT	1 cut(s)	294
CspCI	CAANNNNNGTGG	2 cut(s)	352, 387
CviAII	CATG	3 cut(s)	199, 367, 571
CviJI	RGCY	9 cut(s)	185, 259, 318, 362, 429, 523, 547, 578, 583
CviKI_1	RGCY	9 cut(s)	185, 259, 318, 362, 429, 523, 547, 578, 583
DdeI	CTNAG	4 cut(s)	23, 203, 564, 579
DpnI	GATC	3 cut(s)	240, 379, 539
DpnII	GATC	3 cut(s)	238, 377, 537
DriI	GACNNNNNGTC	1 cut(s)	295
EaeI	YGGCCR	1 cut(s)	521
Eam1104I	CTCTTC	3 cut(s)	52, 317, 339
Eam1105I	GACNNNNNGTC	1 cut(s)	295
EarI	CTCTTC	3 cut(s)	52, 317, 339
Eco130I	CCWWGG	1 cut(s)	430
Eco147I	AGGCCT	1 cut(s)	429
Eco47I	GGWCC	1 cut(s)	593
EcoO109I	RGGNCCY	1 cut(s)	593
EcoRI	GAATTC	2 cut(s)	269, 599
EcoT14I	CCWWGG	1 cut(s)	430
ErhI	CCWWGG	1 cut(s)	430
FaeI	CATG	3 cut(s)	202, 370, 574
FaqI	GGGAC	2 cut(s)	27, 98
FatI	CATG	3 cut(s)	198, 366, 570
FauNDI	CATATG	1 cut(s)	617
FspI	TGCGCA	2 cut(s)	176, 215
GlaI	GCGC	5 cut(s)	6, 8, 151, 176, 215
HaeIII	GGCC	2 cut(s)	429, 523
HapII	CCGG	2 cut(s)	295, 399
HgaI	GACGC	1 cut(s)	80
HhaI	GCGC	5 cut(s)	7, 9, 152, 177, 216
Hin1II	CATG	3 cut(s)	202, 370, 574
Hin6I	GCGC	5 cut(s)	5, 7, 150, 175, 214
HinP1I	GCGC	5 cut(s)	5, 7, 150, 175, 214
HincII	GTYRAC	1 cut(s)	289
HindII	GTYRAC	1 cut(s)	289
HindIII	AAGCTT	1 cut(s)	316
HinfI	GANTC	1 cut(s)	207
HpaII	CCGG	2 cut(s)	295, 399
HphI	GGTGA	1 cut(s)	132
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	3 cut(s)	17, 169, 206
Hpy188III	TCNNGA	2 cut(s)	399, 596
Hpy8I	GTNNAC	1 cut(s)	289
HpyAV	CCTTC	3 cut(s)	185, 475, 479
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4V	TGCA	2 cut(s)	98, 445
HpyF10VI	GCNNNNNNNGC	1 cut(s)	580
HpyF3I	CTNAG	4 cut(s)	23, 203, 564, 579
Hsp92II	CATG	3 cut(s)	202, 370, 574
HspAI	GCGC	5 cut(s)	5, 7, 150, 175, 214
Kpn2I	TCCGGA	1 cut(s)	398
Kzo9I	GATC	3 cut(s)	238, 377, 537
MaeIII	GTNAC	1 cut(s)	78
MalI	GATC	3 cut(s)	240, 379, 539
MboI	GATC	3 cut(s)	238, 377, 537
MboII	GAAGA	8 cut(s)	39, 42, 45, 48, 125, 334, 356, 449
MflI	RGATCY	1 cut(s)	377
MhlI	GDGCHC	2 cut(s)	515, 615
MlsI	TGGCCA	1 cut(s)	523
MluCI	AATT	4 cut(s)	69, 269, 329, 599
MluNI	TGGCCA	1 cut(s)	523
MlyI	GAGTC	1 cut(s)	201
MmeI	TCCRAC	2 cut(s)	40, 480
MnlI	CCTC	6 cut(s)	30, 55, 128, 258, 395, 419
Mox20I	TGGCCA	1 cut(s)	523
MroI	TCCGGA	1 cut(s)	398
MscI	TGGCCA	1 cut(s)	523
MseI	TTAA	1 cut(s)	122
MslI	CAYNNNNRTG	1 cut(s)	458
Msp20I	TGGCCA	1 cut(s)	523
MspI	CCGG	2 cut(s)	295, 399
MvnI	CGCG	1 cut(s)	7
MwoI	GCNNNNNNNGC	1 cut(s)	580
NdeI	CATATG	1 cut(s)	617
NdeII	GATC	3 cut(s)	238, 377, 537
NlaIII	CATG	3 cut(s)	202, 370, 574
NlaIV	GGNNCC	1 cut(s)	594
NsbI	TGCGCA	2 cut(s)	176, 215
NspI	RCATGY	2 cut(s)	202, 574
NspV	TTCGAA	1 cut(s)	189
PalAI	GGCGCGCC	1 cut(s)	5
PauI	GCGCGC	1 cut(s)	5
PceI	AGGCCT	1 cut(s)	429
PinAI	ACCGGT	1 cut(s)	294
Ple19I	CGATCG	1 cut(s)	241
PleI	GAGTC	1 cut(s)	201
PpsI	GAGTC	1 cut(s)	201
PpuMI	RGGWCCY	1 cut(s)	593
Psp5II	RGGWCCY	1 cut(s)	593
PspN4I	GGNNCC	1 cut(s)	594
PspPI	GGNCC	1 cut(s)	593
PspPPI	RGGWCCY	1 cut(s)	593
PsuI	RGATCY	1 cut(s)	377
PteI	GCGCGC	1 cut(s)	5
PvuI	CGATCG	1 cut(s)	241
RseI	CAYNNNNRTG	1 cut(s)	458
SaqAI	TTAA	1 cut(s)	122
Sau3AI	GATC	3 cut(s)	238, 377, 537
Sau96I	GGNCC	1 cut(s)	593
SchI	GAGTC	1 cut(s)	201
SduI	GDGCHC	2 cut(s)	515, 615
SetI	ASST	6 cut(s)	22, 320, 490, 549, 565, 580
SfcI	CTRYAG	1 cut(s)	531
SfuI	TTCGAA	1 cut(s)	189
SgsI	GGCGCGCC	1 cut(s)	5
SinI	GGWCC	1 cut(s)	593
SmiMI	CAYNNNNRTG	1 cut(s)	458
Sse9I	AATT	4 cut(s)	69, 269, 329, 599
SseBI	AGGCCT	1 cut(s)	429
StuI	AGGCCT	1 cut(s)	429
StyI	CCWWGG	1 cut(s)	430
TaaI	ACNGT	1 cut(s)	286
TaqI	TCGA	2 cut(s)	189, 237
TasI	AATT	4 cut(s)	69, 269, 329, 599
Tru1I	TTAA	1 cut(s)	122
Tru9I	TTAA	1 cut(s)	122
TscAI	CASTG	1 cut(s)	412
TspDTI	ATGAA	4 cut(s)	234, 246, 357, 541
TspRI	CASTG	1 cut(s)	412
VpaK11BI	GGWCC	1 cut(s)	593
XapI	RAATTY	3 cut(s)	269, 329, 599
XceI	RCATGY	2 cut(s)	202, 574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.