AT1G15870

Mitochondrial glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007719
Physical Location & Seq
Forward (+)
5457084 .. 5458429
1346 bp
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UTR
Exon/CDS
Intron
AT1G15870.1

Sequence Viewer

Length: 729 bp
ATGGCTCGCCTCCTCAGATGTCTGAGAAGAAGTTTCATATTTAGTTCATCGACTTCGATTGCGTACAGAAACCCTAGAATATGTGTTCAGTCAAATCAAAGCTATATTTTCTTAAGCAGCCGCAAGTTTCTCAGCTCGGGGAGTTACGTTTCAGAAATGCGGAGAACAGCTTTCGAGGGTAACATTCTCAGATTAATTCGTTTGGAGATTCAGTCCGAGCTTGATCACTCGCCTATTCTTCAGCCTGAAGAGAGTTTTGGTCCATTCACGGTGGATGAGCGTCCGGGGGAGCAGTGGATTAGCTTGAGAAGAAAATTTGGGGAGAAGGAAGATATTAAGATTGAAGCAACCATGTTTGATGGATCAGTTCCATCATCAAAATCTACTACCAGCGACCCTGAAGATGTTCAGCTTCATATTACTTTCATTGTCAACATCTCTAAGGGTGATGGTGAGACCTTAGAGATCATGTGTTCTGCTTGGCCTGATACCATACAGATCACCAAGTTCTTTGTTCGTAAAAGCAGCCAGAACTCACCAAATGCCTATATTGGACCTGAATTCCAGGAAATGGAAGATGAACTTCAAGACTCGGTTTATCGATTTTTGGAGGAAAGAGGTATAAGTGATGATCTTGCTGAGTTCTTGCATCAGTACATGAAGAACAAAGATAAAGCTGAGTATATTAGATGGATGGAGACTGTTAAATCTTATGTTGAGCAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko05168 map05168
Pfam Domains
Protein Families
MAM33

Protein Analysis

242

Amino Acids

28.15

Weight (kDa)

5.32

Isoelectric Point (pI)

68.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAM33 PF02330 83 - 239 1.6e-32 Mitochondrial glycoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 571
AciI CCGC 2 cut(s) 121, 160
AclWI GGATC 1 cut(s) 370
AcsI RAATTY 2 cut(s) 314, 560
AcuI CTGAAG 3 cut(s) 224, 267, 420
AfaI GTAC 2 cut(s) 65, 656
AfiI CCNNNNNNNGG 1 cut(s) 571
AflII CTTAAG 1 cut(s) 112
AgsI TTSAA 2 cut(s) 344, 587
AjnI CCWGG 1 cut(s) 564
AjuI GAANNNNNNNTTGG 2 cut(s) 240, 272
AluBI AGCT 7 cut(s) 102, 135, 170, 220, 303, 412, 677
AluI AGCT 7 cut(s) 102, 135, 170, 220, 303, 412, 677
Alw26I GTCTC 2 cut(s) 449, 692
AlwI GGATC 1 cut(s) 370
Ama87I CYCGRG 1 cut(s) 136
AoxI GGCC 1 cut(s) 482
ApeKI GCWGC 2 cut(s) 117, 525
ApoI RAATTY 2 cut(s) 314, 560
AseI ATTAAT 1 cut(s) 194
Asp700I GAANNNNTTC 1 cut(s) 405
AspS9I GGNCC 2 cut(s) 260, 554
AsuC2I CCSGG 1 cut(s) 285
AsuHPI GGTGA 4 cut(s) 458, 464, 493, 528
AvaI CYCGRG 1 cut(s) 136
AvaII GGWCC 2 cut(s) 260, 554
BbvI GCAGC 2 cut(s) 129, 537
BccI CCATC 5 cut(s) 353, 379, 443, 684, 688
BciT130I CCWGG 1 cut(s) 566
BclI TGATCA 1 cut(s) 223
BcnI CCSGG 1 cut(s) 285
BcoDI GTCTC 2 cut(s) 449, 692
BfaI CTAG 1 cut(s) 75
BfrI CTTAAG 1 cut(s) 112
BisI GCNGC 3 cut(s) 118, 121, 526
BlsI GCNGC 3 cut(s) 119, 122, 527
Bme1390I CCNGG 2 cut(s) 285, 566
Bme18I GGWCC 2 cut(s) 260, 554
BmeT110I CYCGRG 1 cut(s) 136
BmgT120I GGNCC 2 cut(s) 260, 554
BmrFI CCNGG 2 cut(s) 285, 566
BmsI GCATC 1 cut(s) 658
BpuEI CTTGAG 1 cut(s) 325
BpuMI CCSGG 1 cut(s) 285
Bsa29I ATCGAT 1 cut(s) 601
BsaI GGTCTC 1 cut(s) 449
BsaJI CCNNGG 1 cut(s) 284
BsaXI ACNNNNNCTCC 2 cut(s) 197, 227
Bsc4I CCNNNNNNNGG 1 cut(s) 571
BseBI CCWGG 1 cut(s) 566
BseCI ATCGAT 1 cut(s) 601
BseDI CCNNGG 1 cut(s) 284
BseGI GGATG 2 cut(s) 280, 699
BseLI CCNNNNNNNGG 1 cut(s) 571
BseMII CTCAG 6 cut(s) 14, 28, 145, 202, 630, 669
BseXI GCAGC 2 cut(s) 129, 537
BshFI GGCC 1 cut(s) 484
BshVI ATCGAT 1 cut(s) 601
BsiHKCI CYCGRG 1 cut(s) 136
BsiSI CCGG 1 cut(s) 284
BslI CCNNNNNNNGG 1 cut(s) 571
BsmAI GTCTC 2 cut(s) 449, 692
BsnI GGCC 1 cut(s) 484
Bso31I GGTCTC 1 cut(s) 449
BsoBI CYCGRG 1 cut(s) 136
Bsp143I GATC 5 cut(s) 223, 362, 465, 498, 631
BspACI CCGC 2 cut(s) 121, 160
BspANI GGCC 1 cut(s) 484
BspCNI CTCAG 6 cut(s) 15, 27, 144, 201, 631, 670
BspDI ATCGAT 1 cut(s) 601
BspPI GGATC 1 cut(s) 370
BspTI CTTAAG 1 cut(s) 112
BspTNI GGTCTC 1 cut(s) 449
BssECI CCNNGG 1 cut(s) 284
BssMI GATC 5 cut(s) 223, 362, 465, 498, 631
Bst2UI CCWGG 1 cut(s) 566
Bst4CI ACNGT 2 cut(s) 271, 703
Bst6I CTCTTC 1 cut(s) 243
BstAFI CTTAAG 1 cut(s) 112
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 8 cut(s) 14, 23, 131, 188, 441, 460, 639, 678
BstF5I GGATG 2 cut(s) 280, 699
BstKTI GATC 5 cut(s) 226, 365, 468, 501, 634
BstMAI GTCTC 2 cut(s) 449, 692
BstMBI GATC 5 cut(s) 223, 362, 465, 498, 631
BstNI CCWGG 1 cut(s) 566
BstSCI CCNGG 2 cut(s) 283, 564
BstV1I GCAGC 2 cut(s) 129, 537
Bsu15I ATCGAT 1 cut(s) 601
BsuRI GGCC 1 cut(s) 484
BsuTUI ATCGAT 1 cut(s) 601
BtsCI GGATG 2 cut(s) 280, 699
BtsI GCAGTG 1 cut(s) 299
BtsIMutI CAGTG 1 cut(s) 299
Cac8I GCNNGC 1 cut(s) 7
Cfr13I GGNCC 2 cut(s) 260, 554
ClaI ATCGAT 1 cut(s) 601
CseI GACGC 1 cut(s) 269
Csp6I GTAC 2 cut(s) 64, 655
CviAII CATG 3 cut(s) 352, 469, 658
CviQI GTAC 2 cut(s) 64, 655
DdeI CTNAG 8 cut(s) 14, 23, 131, 188, 441, 460, 639, 678
DpnI GATC 5 cut(s) 225, 364, 467, 500, 633
DpnII GATC 5 cut(s) 223, 362, 465, 498, 631
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
Eco31I GGTCTC 1 cut(s) 449
Eco47I GGWCC 2 cut(s) 260, 554
Eco57I CTGAAG 3 cut(s) 224, 267, 420
Eco88I CYCGRG 1 cut(s) 136
EcoRI GAATTC 1 cut(s) 560
EcoRII CCWGG 1 cut(s) 564
FaeI CATG 3 cut(s) 355, 472, 661
FalI AAGNNNNNCTT 2 cut(s) 567, 599
FatI CATG 3 cut(s) 351, 468, 657
FbaI TGATCA 1 cut(s) 223
Fnu4HI GCNGC 3 cut(s) 118, 121, 526
FokI GGATG 2 cut(s) 287, 706
Fsp4HI GCNGC 3 cut(s) 118, 121, 526
FspBI CTAG 1 cut(s) 75
GluI GCNGC 3 cut(s) 118, 121, 526
HaeIII GGCC 1 cut(s) 484
HapII CCGG 1 cut(s) 284
HgaI GACGC 1 cut(s) 269
Hin1II CATG 3 cut(s) 355, 472, 661
HincII GTYRAC 1 cut(s) 433
HindII GTYRAC 1 cut(s) 433
HinfI GANTC 2 cut(s) 208, 590
HpaII CCGG 1 cut(s) 284
HphI GGTGA 4 cut(s) 458, 464, 493, 528
Hpy166II GTNNAC 1 cut(s) 433
Hpy188I TCNGA 5 cut(s) 17, 24, 154, 191, 217
Hpy188III TCNNGA 1 cut(s) 587
Hpy8I GTNNAC 1 cut(s) 433
HpyAV CCTTC 1 cut(s) 319
HpyCH4III ACNGT 2 cut(s) 271, 703
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 1 cut(s) 649
HpyF3I CTNAG 8 cut(s) 14, 23, 131, 188, 441, 460, 639, 678
HpySE526I ACGT 1 cut(s) 147
Hsp92II CATG 3 cut(s) 355, 472, 661
Ksp22I TGATCA 1 cut(s) 223
Kzo9I GATC 5 cut(s) 223, 362, 465, 498, 631
LmnI GCTCC 1 cut(s) 289
LpnPI CCDG 9 cut(s) 258, 297, 403, 411, 498, 542, 551, 570, 578
Lsp1109I GCAGC 2 cut(s) 129, 537
LweI GCATC 1 cut(s) 658
MaeI CTAG 1 cut(s) 75
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 2 cut(s) 143, 179
MalI GATC 5 cut(s) 225, 364, 467, 500, 633
MboI GATC 5 cut(s) 223, 362, 465, 498, 631
MboII GAAGA 8 cut(s) 39, 230, 260, 321, 341, 413, 587, 673
MluCI AATT 3 cut(s) 195, 314, 560
MlyI GAGTC 1 cut(s) 584
MnlI CCTC 5 cut(s) 20, 23, 169, 604, 611
MroXI GAANNNNTTC 1 cut(s) 405
MseI TTAA 4 cut(s) 113, 194, 336, 705
MspCI CTTAAG 1 cut(s) 112
MspI CCGG 1 cut(s) 284
MspR9I CCNGG 2 cut(s) 285, 566
MvaI CCWGG 1 cut(s) 566
NciI CCSGG 1 cut(s) 285
NdeII GATC 5 cut(s) 223, 362, 465, 498, 631
NlaIII CATG 3 cut(s) 355, 472, 661
PdmI GAANNNNTTC 1 cut(s) 405
PfeI GAWTC 1 cut(s) 208
PflMI CCANNNNNTGG 1 cut(s) 571
PfoI TCCNGGA 1 cut(s) 564
PkrI GCNGC 3 cut(s) 119, 122, 527
PleI GAGTC 1 cut(s) 584
PpsI GAGTC 1 cut(s) 584
PshBI ATTAAT 1 cut(s) 194
Psp6I CCWGG 1 cut(s) 564
PspGI CCWGG 1 cut(s) 564
PspPI GGNCC 2 cut(s) 260, 554
RsaI GTAC 2 cut(s) 65, 656
RsaNI GTAC 2 cut(s) 64, 655
SaqAI TTAA 4 cut(s) 113, 194, 336, 705
SatI GCNGC 3 cut(s) 118, 121, 526
Sau3AI GATC 5 cut(s) 223, 362, 465, 498, 631
Sau96I GGNCC 2 cut(s) 260, 554
SchI GAGTC 1 cut(s) 584
ScrFI CCNGG 2 cut(s) 285, 566
SfaNI GCATC 1 cut(s) 658
SinI GGWCC 2 cut(s) 260, 554
SmlI CTYRAG 2 cut(s) 112, 304
SmoI CTYRAG 2 cut(s) 112, 304
Sse9I AATT 3 cut(s) 195, 314, 560
SsiI CCGC 2 cut(s) 121, 160
SspMI CTAG 1 cut(s) 75
StyD4I CCNGG 2 cut(s) 283, 564
TaaI ACNGT 2 cut(s) 271, 703
TaiI ACGT 1 cut(s) 150
TaqI TCGA 4 cut(s) 50, 56, 174, 601
TasI AATT 3 cut(s) 195, 314, 560
TatI WGTACW 1 cut(s) 654
TauI GCSGC 1 cut(s) 123
TfiI GAWTC 1 cut(s) 208
Tru1I TTAA 4 cut(s) 113, 194, 336, 705
Tru9I TTAA 4 cut(s) 113, 194, 336, 705
TscAI CASTG 1 cut(s) 299
TseI GCWGC 2 cut(s) 117, 525
TspDTI ATGAA 6 cut(s) 25, 36, 404, 415, 594, 674
TspRI CASTG 1 cut(s) 299
Van91I CCANNNNNTGG 1 cut(s) 571
Vha464I CTTAAG 1 cut(s) 112
VpaK11BI GGWCC 2 cut(s) 260, 554
VspI ATTAAT 1 cut(s) 194
XapI RAATTY 2 cut(s) 314, 560
XmnI GAANNNNTTC 1 cut(s) 405
XspI CTAG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.