AT2G01070

LOCATED IN endomembrane system, integral to membrane

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011281
Physical Location & Seq
Forward (+)
75520 .. 77865
2346 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G01070.1

Sequence Viewer

Length: 1491 bp
ATGGATTTGGGAAAACTGATCCAGCTGTCTGCGCTGCTGTGCCCATTTCTTCTATCATTACACTTTAGAATCGCTGGGGCCTCCGCCCACATCTACTCTTCCCAGCCCTTCCACGATGTCGGTAATTCTCTCCTCCTCTACGGTGGCAGCGAGGGCATCTTCGCCTCTTCCCGATCTTTAATCAGGTTTGAGAACATCACTCTCTGGAGGACAATTACCGGTAAGGGCCACCGCAGCAATGGGTTAGTTCAAGCAGTGATCTTTGAAGCCTCCGATCGTAACAATATCGGTGGTTCAGCTTACGGAGGCCAAAGATCTATTTGCTGCACTCCAGATCTGGCCAAGCTTCAAGGCTGTAAGCAGGGTGAGATCATTAGGATTCCTTCTCCACATGACCCTCAATGGCCTATCCTCTTACCTGTCCGCTTTAAAGGAAAACGCTCGTCTGCTAAGATGGCAGACACTGAGATTCTTATCACCAAGACTGGAATCTATAATCTCTTATTCATATCTTGTGATCCACAACTTAAGGGCCTCAAAATGACCGGAAAGACTGTTTGGAAAAATCCCGACGGCTATCTTCCTGGTAGGATGGCTCCACTCGTGAATTTCTATGTCTATATGTCTCTCGCTTATTTGTTGCTCAGTGCCGTCTGGTTCTTCCAGTATTTGAGGTTCCGGATGGATATATTGCCACTTCAACATTGCATTACTGCCGTCATTCTTCTAGGATTGCTTGAGATGCTCTTTTGGTACTTGGATTATGCTAATTTTAATCACACGGGGATGAGGCCTTTAGCCCTTACTACATGGGTTGTTACCATTGGTGCCTTGAGAAAGACTGTTTCCCGCATTCTCATTCTCTGTGTTTCCATGGGATTTGGGGTTGTCAAATCTACTCTTGGTGGTCTCACTTCTAAAGTCCTCCTTGTTGGAGTTACTTACTTCATAGCTTCTGAGATCCTTGATATTGCTGAGCACGTTGGCATCATTGACGATATGTCCGGAAGATCAAAACTTTTTCTTGTCCTTCCTGACGCCTTCCTCGATGCATTTCTCATATTGTGGATATTTACCTCTCTTTCGAAAACACTGGAACAGTTACAGATGAAAAGGACCTCGGTGAAGCTGGAAATTTACCGCAAGTTCTCAAATGCACTCGCTGTGATGGTTGTTGCCTCTGTTGCGTGGATAGTGTATGAGGTGTATTTCAAAGCAACAGATCCATTCAATGAACGATGGCAGACTGCTTGGACTATAACTGCCTTCTGGGATGTTATCGCATTCTTGTTGCTATGTATTATTTGCTATCTCTGGACCCCCTCGCAGAACTCCCAAAGATATGCATATTCGGGAGACGTGGATGAAGAAAACGAGGAAGCTCAATCTCTGACAGGGGGGAAGCAAGATGGTGATATTAGCTTAGTTAAGCAAGAGAAGAATGCGGAGTCGGACAGGGAAGAAGATGTTGAAGAAGATAAAAGAGAGTGA

Protein Analysis

496

Amino Acids

55.78

Weight (kDa)

7.55

Isoelectric Point (pI)

43.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GOST_TM PF06814 200 - 446 2.3e-93 GOST, seven transmembrane domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011281)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01070 AT2G01070
fragaria_vesca FvH4_5g30110 FvH4_5g30110
malus_domestica MD08G1225000.v1.1 MD15G1418500.v1.1
prunus_persica Prupe.1G562600_v2.0.a1
pyrus_communis pycom08g19610 pycom08g19620 pycom15g37150
rosa_chinensis RchiOBHm_Chr7g0224311 RchiOBHm_Chr7g0224371
rosa_laevigata RLG00000001905
rosa_multiflora Rmu_sc0025639.1_g000001
rosa_roxburghii Rroxscaffold_3G00234870
rosa_rugosa Rorug07G0222600
rosa_samantha Rh7AG380800 Rh7BG358500 Rh7DG367600
rosa_wichuraiana Rw7G031110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 827
AccIII TCCGGA 2 cut(s) 678, 1004
AciI CCGC 6 cut(s) 84, 232, 424, 850, 1141, 1445
AclWI GGATC 4 cut(s) 13, 512, 955, 1217
AcoI YGGCCR 1 cut(s) 339
AcsI RAATTY 2 cut(s) 607, 1134
AcyI GRCGYC 1 cut(s) 1038
AfaI GTAC 1 cut(s) 755
AflII CTTAAG 1 cut(s) 527
AgeI ACCGGT 1 cut(s) 218
AgsI TTSAA 7 cut(s) 251, 266, 350, 701, 1213, 1231, 1472
AhdI GACNNNNNGTC 1 cut(s) 1000
AjiI CACGTC 1 cut(s) 1360
AjnI CCWGG 1 cut(s) 583
AjuI GAANNNNNNNTTGG 2 cut(s) 541, 573
AluBI AGCT 7 cut(s) 25, 299, 346, 953, 1129, 1382, 1422
AluI AGCT 7 cut(s) 25, 299, 346, 953, 1129, 1382, 1422
Alw21I GWGCWC 1 cut(s) 981
Alw26I GTCTC 3 cut(s) 630, 914, 1350
AlwI GGATC 4 cut(s) 13, 512, 955, 1217
AlwNI CAGNNNCTG 1 cut(s) 464
Aor13HI TCCGGA 2 cut(s) 678, 1004
AoxI GGCC 7 cut(s) 78, 226, 307, 339, 404, 532, 791
ApeKI GCWGC 4 cut(s) 34, 147, 234, 324
ApoI RAATTY 2 cut(s) 607, 1134
AsiGI ACCGGT 1 cut(s) 218
AspLEI GCGC 1 cut(s) 34
AspS9I GGNCC 5 cut(s) 78, 226, 532, 1116, 1317
AsuHPI GGTGA 4 cut(s) 377, 469, 1135, 1424
AsuII TTCGAA 1 cut(s) 1085
AvaII GGWCC 2 cut(s) 1116, 1317
BaeGI GKGCMC 1 cut(s) 44
BalI TGGCCA 1 cut(s) 341
BanI GGYRCC 1 cut(s) 827
BauI CACGAG 1 cut(s) 602
Bbv12I GWGCWC 1 cut(s) 981
BbvI GCAGC 4 cut(s) 21, 159, 246, 311
BccI CCATC 6 cut(s) 448, 586, 676, 1162, 1233, 1403
BceAI ACGGC 3 cut(s) 589, 635, 701
BciT130I CCWGG 1 cut(s) 585
BcoDI GTCTC 3 cut(s) 630, 914, 1350
BfaI CTAG 1 cut(s) 728
BfrI CTTAAG 1 cut(s) 527
BglII AGATCT 2 cut(s) 314, 334
BisI GCNGC 4 cut(s) 35, 148, 235, 325
BlpI GCTNAGC 1 cut(s) 975
BlsI GCNGC 4 cut(s) 36, 149, 236, 326
Bme1390I CCNGG 1 cut(s) 585
Bme18I GGWCC 2 cut(s) 1116, 1317
BmeRI GACNNNNNGTC 1 cut(s) 1000
BmgBI CACGTC 1 cut(s) 1360
BmgT120I GGNCC 5 cut(s) 78, 226, 532, 1116, 1317
BmiI GGNNCC 5 cut(s) 79, 597, 677, 829, 1319
BmrFI CCNGG 1 cut(s) 585
BmsI GCATC 4 cut(s) 165, 732, 996, 1039
BpmI CTGGAG 2 cut(s) 226, 315
Bpu1102I GCTNAGC 1 cut(s) 975
Bpu14I TTCGAA 1 cut(s) 1085
BpuEI CTTGAG 2 cut(s) 758, 853
BsaBI GATNNNNATC 1 cut(s) 473
BsaHI GRCGYC 1 cut(s) 1038
BsaI GGTCTC 1 cut(s) 914
BsaJI CCNNGG 2 cut(s) 873, 1119
BsaWI WCCGGW 4 cut(s) 218, 545, 678, 1004
Bse118I RCCGGY 1 cut(s) 218
Bse1I ACTGG 3 cut(s) 490, 664, 1098
Bse3DI GCAATG 2 cut(s) 244, 703
Bse8I GATNNNNATC 1 cut(s) 473
BseAI TCCGGA 2 cut(s) 678, 1004
BseBI CCWGG 1 cut(s) 585
BseDI CCNNGG 2 cut(s) 873, 1119
BseGI GGATG 5 cut(s) 597, 687, 792, 1279, 1369
BseJI GATNNNNATC 1 cut(s) 473
BseMI GCAATG 2 cut(s) 244, 703
BseMII CTCAG 4 cut(s) 456, 658, 948, 966
BseNI ACTGG 3 cut(s) 490, 664, 1098
BseRI GAGGAG 2 cut(s) 122, 125
BseSI GKGCMC 1 cut(s) 44
BseXI GCAGC 4 cut(s) 21, 159, 246, 311
BseYI CCCAGC 2 cut(s) 74, 102
BsgI GTGCAG 1 cut(s) 310
Bsh1285I CGRYCG 1 cut(s) 277
BshFI GGCC 7 cut(s) 80, 228, 309, 341, 406, 534, 793
BshNI GGYRCC 1 cut(s) 827
BshTI ACCGGT 1 cut(s) 218
BsiEI CGRYCG 1 cut(s) 277
BsiHKAI GWGCWC 1 cut(s) 981
BsiSI CCGG 4 cut(s) 219, 546, 679, 1005
BsmAI GTCTC 3 cut(s) 630, 914, 1350
BsmBI CGTCTC 1 cut(s) 1350
BsmI GAATGC 3 cut(s) 852, 1283, 1447
BsnI GGCC 7 cut(s) 80, 228, 309, 341, 406, 534, 793
Bso31I GGTCTC 1 cut(s) 914
Bsp119I TTCGAA 1 cut(s) 1085
Bsp1286I GDGCHC 2 cut(s) 44, 981
Bsp13I TCCGGA 2 cut(s) 678, 1004
Bsp1720I GCTNAGC 1 cut(s) 975
Bsp19I CCATGG 1 cut(s) 873
BspACI CCGC 6 cut(s) 84, 232, 424, 850, 1141, 1445
BspANI GGCC 7 cut(s) 80, 228, 309, 341, 406, 534, 793
BspCNI CTCAG 4 cut(s) 457, 657, 949, 967
BspEI TCCGGA 2 cut(s) 678, 1004
BspLI GGNNCC 5 cut(s) 79, 597, 677, 829, 1319
BspPI GGATC 4 cut(s) 13, 512, 955, 1217
BspT104I TTCGAA 1 cut(s) 1085
BspT107I GGYRCC 1 cut(s) 827
BspTI CTTAAG 1 cut(s) 527
BspTNI GGTCTC 1 cut(s) 914
BsrDI GCAATG 2 cut(s) 244, 703
BsrFI RCCGGY 1 cut(s) 218
BsrI ACTGG 3 cut(s) 490, 664, 1098
BssAI RCCGGY 1 cut(s) 218
BssECI CCNNGG 2 cut(s) 873, 1119
BssNI GRCGYC 1 cut(s) 1038
BssSI CACGAG 1 cut(s) 602
BssT1I CCWWGG 1 cut(s) 873
Bst2BI CACGAG 1 cut(s) 602
Bst2UI CCWGG 1 cut(s) 585
Bst4CI ACNGT 4 cut(s) 143, 556, 844, 1101
Bst6I CTCTTC 2 cut(s) 103, 172
BstACI GRCGYC 1 cut(s) 1038
BstAFI CTTAAG 1 cut(s) 527
BstBI TTCGAA 1 cut(s) 1085
BstDEI CTNAG 6 cut(s) 450, 465, 644, 957, 975, 1423
BstDSI CCRYGG 1 cut(s) 873
BstF5I GGATG 5 cut(s) 597, 687, 792, 1279, 1369
BstHHI GCGC 1 cut(s) 34
BstMAI GTCTC 3 cut(s) 630, 914, 1350
BstMCI CGRYCG 1 cut(s) 277
BstMWI GCNNNNNNNGC 6 cut(s) 31, 153, 234, 455, 742, 1184
BstNI CCWGG 1 cut(s) 585
BstSCI CCNGG 1 cut(s) 583
BstSLI GKGCMC 1 cut(s) 44
BstV1I GCAGC 4 cut(s) 21, 159, 246, 311
BstX2I RGATCY 4 cut(s) 314, 334, 960, 1222
BstYI RGATCY 4 cut(s) 314, 334, 960, 1222
BsuRI GGCC 7 cut(s) 80, 228, 309, 341, 406, 534, 793
BtgI CCRYGG 1 cut(s) 873
BtrI CACGTC 1 cut(s) 1360
BtsCI GGATG 5 cut(s) 597, 687, 792, 1279, 1369
BtsI GCAGTG 1 cut(s) 261
BtsIMutI CAGTG 4 cut(s) 261, 462, 652, 1091
CaiI CAGNNNCTG 1 cut(s) 464
CfoI GCGC 1 cut(s) 34
Cfr10I RCCGGY 1 cut(s) 218
Cfr13I GGNCC 5 cut(s) 78, 226, 532, 1116, 1317
CseI GACGC 1 cut(s) 1046
Csp6I GTAC 1 cut(s) 754
CspAI ACCGGT 1 cut(s) 218
CspCI CAANNNNNGTGG 2 cut(s) 271, 306
CviAII CATG 3 cut(s) 392, 810, 874
CviQI GTAC 1 cut(s) 754
DdeI CTNAG 6 cut(s) 450, 465, 644, 957, 975, 1423
DraI TTTAAA 1 cut(s) 430
DriI GACNNNNNGTC 1 cut(s) 1000
EaeI YGGCCR 1 cut(s) 339
Eam1104I CTCTTC 2 cut(s) 103, 172
Eam1105I GACNNNNNGTC 1 cut(s) 1000
EarI CTCTTC 2 cut(s) 103, 172
EciI GGCGGA 1 cut(s) 73
Eco130I CCWWGG 1 cut(s) 873
Eco147I AGGCCT 1 cut(s) 793
Eco31I GGTCTC 1 cut(s) 914
Eco47I GGWCC 2 cut(s) 1116, 1317
EcoO109I RGGNCCY 3 cut(s) 78, 532, 1116
EcoRII CCWGG 1 cut(s) 583
EcoT14I CCWWGG 1 cut(s) 873
EcoT22I ATGCAT 2 cut(s) 1054, 1348
ErhI CCWWGG 1 cut(s) 873
Esp3I CGTCTC 1 cut(s) 1350
FaeI CATG 3 cut(s) 395, 813, 877
FalI AAGNNNNNCTT 2 cut(s) 912, 944
FatI CATG 3 cut(s) 391, 809, 873
FauI CCCGC 1 cut(s) 857
Fnu4HI GCNGC 4 cut(s) 35, 148, 235, 325
FokI GGATG 5 cut(s) 604, 694, 799, 1286, 1376
Fsp4HI GCNGC 4 cut(s) 35, 148, 235, 325
FspBI CTAG 1 cut(s) 728
GlaI GCGC 1 cut(s) 33
GluI GCNGC 4 cut(s) 35, 148, 235, 325
GsaI CCCAGC 2 cut(s) 78, 106
GsuI CTGGAG 2 cut(s) 226, 315
HaeIII GGCC 7 cut(s) 80, 228, 309, 341, 406, 534, 793
HapII CCGG 4 cut(s) 219, 546, 679, 1005
HgaI GACGC 1 cut(s) 1046
HhaI GCGC 1 cut(s) 34
Hin1I GRCGYC 1 cut(s) 1038
Hin1II CATG 3 cut(s) 395, 813, 877
Hin6I GCGC 1 cut(s) 32
HinP1I GCGC 1 cut(s) 32
HindIII AAGCTT 1 cut(s) 344
HinfI GANTC 5 cut(s) 69, 379, 469, 489, 1448
HpaII CCGG 4 cut(s) 219, 546, 679, 1005
HphI GGTGA 4 cut(s) 377, 469, 1135, 1424
Hpy188I TCNGA 4 cut(s) 274, 958, 1392, 1453
Hpy99I CGWCG 1 cut(s) 575
HpyAV CCTTC 5 cut(s) 118, 393, 1040, 1051, 1276
HpyCH4III ACNGT 4 cut(s) 143, 556, 844, 1101
HpyCH4IV ACGT 2 cut(s) 981, 1359
HpyCH4V TGCA 5 cut(s) 327, 708, 1052, 1157, 1346
HpyF10VI GCNNNNNNNGC 6 cut(s) 31, 153, 234, 455, 742, 1184
HpyF3I CTNAG 6 cut(s) 450, 465, 644, 957, 975, 1423
HpySE526I ACGT 2 cut(s) 981, 1359
Hsp92I GRCGYC 1 cut(s) 1038
Hsp92II CATG 3 cut(s) 395, 813, 877
HspAI GCGC 1 cut(s) 32
Kpn2I TCCGGA 2 cut(s) 678, 1004
LmnI GCTCC 1 cut(s) 601
Lsp1109I GCAGC 4 cut(s) 21, 159, 246, 311
LweI GCATC 4 cut(s) 165, 732, 996, 1039
MaeI CTAG 1 cut(s) 728
MaeII ACGT 2 cut(s) 981, 1359
MaeIII GTNAC 4 cut(s) 278, 817, 937, 1101
MflI RGATCY 4 cut(s) 314, 334, 960, 1222
MhlI GDGCHC 2 cut(s) 44, 981
MlsI TGGCCA 1 cut(s) 341
MluCI AATT 5 cut(s) 124, 213, 607, 769, 1134
MluNI TGGCCA 1 cut(s) 341
MlyI GAGTC 1 cut(s) 1457
MmeI TCCRAC 2 cut(s) 913, 1431
Mox20I TGGCCA 1 cut(s) 341
Mph1103I ATGCAT 2 cut(s) 1054, 1348
MroI TCCGGA 2 cut(s) 678, 1004
MscI TGGCCA 1 cut(s) 341
MseI TTAA 5 cut(s) 179, 429, 528, 774, 1428
MslI CAYNNNNRTG 1 cut(s) 785
Msp20I TGGCCA 1 cut(s) 341
MspA1I CMGCKG 1 cut(s) 25
MspCI CTTAAG 1 cut(s) 527
MspI CCGG 4 cut(s) 219, 546, 679, 1005
MspR9I CCNGG 1 cut(s) 585
Mva1269I GAATGC 3 cut(s) 852, 1283, 1447
MvaI CCWGG 1 cut(s) 585
MwoI GCNNNNNNNGC 6 cut(s) 31, 153, 234, 455, 742, 1184
NcoI CCATGG 1 cut(s) 873
NlaIII CATG 3 cut(s) 395, 813, 877
NlaIV GGNNCC 5 cut(s) 79, 597, 677, 829, 1319
NsiI ATGCAT 2 cut(s) 1054, 1348
NspV TTCGAA 1 cut(s) 1085
PceI AGGCCT 1 cut(s) 793
PcsI WCGNNNNNNNCGW 2 cut(s) 147, 1044
PctI GAATGC 3 cut(s) 852, 1283, 1447
PfeI GAWTC 4 cut(s) 69, 379, 469, 489
PinAI ACCGGT 1 cut(s) 218
PkrI GCNGC 4 cut(s) 36, 149, 236, 326
Ple19I CGATCG 1 cut(s) 277
PleI GAGTC 1 cut(s) 1456
PpsI GAGTC 1 cut(s) 1456
PpuMI RGGWCCY 1 cut(s) 1116
Psp5II RGGWCCY 1 cut(s) 1116
Psp6I CCWGG 1 cut(s) 583
PspFI CCCAGC 2 cut(s) 74, 102
PspGI CCWGG 1 cut(s) 583
PspN4I GGNNCC 5 cut(s) 79, 597, 677, 829, 1319
PspPI GGNCC 5 cut(s) 78, 226, 532, 1116, 1317
PspPPI RGGWCCY 1 cut(s) 1116
PsrI GAACNNNNNNTAC 2 cut(s) 659, 691
PstNI CAGNNNCTG 1 cut(s) 464
PsuI RGATCY 4 cut(s) 314, 334, 960, 1222
PvuI CGATCG 1 cut(s) 277
PvuII CAGCTG 1 cut(s) 25
RsaI GTAC 1 cut(s) 755
RsaNI GTAC 1 cut(s) 754
RseI CAYNNNNRTG 1 cut(s) 785
SaqAI TTAA 5 cut(s) 179, 429, 528, 774, 1428
SatI GCNGC 4 cut(s) 35, 148, 235, 325
Sau96I GGNCC 5 cut(s) 78, 226, 532, 1116, 1317
SchI GAGTC 1 cut(s) 1457
ScrFI CCNGG 1 cut(s) 585
SduI GDGCHC 2 cut(s) 44, 981
SfaNI GCATC 4 cut(s) 165, 732, 996, 1039
SfuI TTCGAA 1 cut(s) 1085
SinI GGWCC 2 cut(s) 1116, 1317
SmiMI CAYNNNNRTG 1 cut(s) 785
SmlI CTYRAG 3 cut(s) 527, 737, 832
SmoI CTYRAG 3 cut(s) 527, 737, 832
Sse9I AATT 5 cut(s) 124, 213, 607, 769, 1134
SseBI AGGCCT 1 cut(s) 793
SsiI CCGC 6 cut(s) 84, 232, 424, 850, 1141, 1445
SspMI CTAG 1 cut(s) 728
StuI AGGCCT 1 cut(s) 793
StyD4I CCNGG 1 cut(s) 583
StyI CCWWGG 1 cut(s) 873
TaaI ACNGT 4 cut(s) 143, 556, 844, 1101
TaiI ACGT 2 cut(s) 984, 1362
TaqI TCGA 2 cut(s) 1047, 1085
TasI AATT 5 cut(s) 124, 213, 607, 769, 1134
TfiI GAWTC 4 cut(s) 69, 379, 469, 489
Tru1I TTAA 5 cut(s) 179, 429, 528, 774, 1428
Tru9I TTAA 5 cut(s) 179, 429, 528, 774, 1428
TscAI CASTG 4 cut(s) 261, 469, 652, 1098
TseI GCWGC 4 cut(s) 34, 147, 234, 324
TspDTI ATGAA 5 cut(s) 496, 937, 1124, 1248, 1380
TspGWI ACGGA 1 cut(s) 318
TspRI CASTG 4 cut(s) 261, 469, 652, 1098
Vha464I CTTAAG 1 cut(s) 527
VpaK11BI GGWCC 2 cut(s) 1116, 1317
XapI RAATTY 2 cut(s) 607, 1134
XcmI CCANNNNNNNNNTGG 1 cut(s) 236
XspI CTAG 1 cut(s) 728
Zsp2I ATGCAT 2 cut(s) 1054, 1348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.