Rh7DG367600

Transmembrane protein 87B

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0011281
Physical Location & Seq
Forward (+)
49720172 .. 49724469
4298 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG367600.1

Sequence Viewer

Length: 1470 bp
ATGGATTTCACATTCCAGAGAAGAGGAAGAGGAAGAAGGAGAAGACTCACCGACCTCTCGCTGCTCCTCATCCTCCTCCTCCTTTTAACAACATTATTCAATTCCACTCCCGCCAACGCCTCCATCCATATCTACAGCGATGAAATCTTCCGGGAAGTCGGCAATGCTTTCCTCCTCTCCGGCGGCAGCGAAGGCATCTCCGCCTCTCCCTCCTCCCGCTCTTTTATCCGATTCGAGAATATCACCTTCTGGAGGAGCGAGGCTGCTGTTGACAAGAAGCATAGTAATGGGTTGATACAGGTTATCGTTTTTGAAGCCGCGGATCGTAATAATATCGGTGGTTCTGCTTATGGGGGACAGAGATCTATATGTTGCACCCCTGATCTTGCTAAGATGGAAGGTTGCAAGCAAGGTGAAGTCATTAGGAGACCTTCTGCCTCAGATGTTAATTGGCCCATTGTTATAAATGTACACTTCAGAAGGAACAGTCTCTCTAAAAGTATGGATTTTAAAGAGATTTTGATCACGAAAACGGGGATGTATAACTTGTTTTTTGTAGCCTGTGATCCAAAGCTGAAGGAACTAGTAATGAGCGGGAAGACGGTATGGAAAAGCCCCCACGGTTATCTACCTGGTCGAATGGCTCCACTGATGAAATTTTACGTGTATATGGCACTTGCTTATGTGCTGATTGGTGTAATTTGGCTCACTCAGTATGTGAGGTTCTGGAAGGATATTCTGCAACTTCAGCATTGCATCACGGCTGTCATTGCTCTTGGATTGTTTGAGATGATTCTTTGGTATTCCGACTATGTCAATTTTAATAATACAGGGATGAGGCCAGTTTTTCTTACGACATTAGTTGTAACAGTTGGAGCTGTGAGAAAAACAGTTTCCCGTCTCCTTATACTCACTGTTTCTATGGGCTATGGAGTAGTACGGCCTACTCTTGGGGGTCTTACCTCCAAGGTGCTTCTGCTTGGAATAACATTTTTTCTGGCAACAGAGTTGCTTAACATTACCGAGTTTGTTGGGACAATTAATGATGTATCAGGAAGAGCGAGATTATTTCTAGTTCTTCCTGATGCTTTCTTGGACGCATTTTTAATCTTGTGGATTTTCACCTCTCTCTCCAAAACACTAGAACAGCTACAGACAAAGAGAAGCTCTGTCAAGTTGGATATGTACAGGAAGTTCTCAAATGCATTAGCAGTGACAGTCATTGCCTCAGTTGCATGGATAGCTTATGAGGTGTACTTCAAAGCAACAGATCCCTTCAATGAGAAGTGGCATAGTGCTTGGATCATCACTGCTTTCTGGGATATTCTTGCATTTGCATTGCTGGGCGTTATCTGCTATCTTTGGGCACCATCTCAGAACTCTCAGAGGTGTATAATAATACTCAATTCCTGTGCAATCAATAACATGCTTGTGTTTCTCTTCTCTTACTTTCTATTGCAATTTTTATAA

Protein Analysis

489

Amino Acids

55.34

Weight (kDa)

9.5

Isoelectric Point (pI)

45.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GOST_TM PF06814 216 - 462 2.5e-89 GOST, seven transmembrane domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011281)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01070 AT2G01070
fragaria_vesca FvH4_5g30110 FvH4_5g30110
malus_domestica MD08G1225000.v1.1 MD15G1418500.v1.1
prunus_persica Prupe.1G562600_v2.0.a1
pyrus_communis pycom08g19610 pycom08g19620 pycom15g37150
rosa_chinensis RchiOBHm_Chr7g0224311 RchiOBHm_Chr7g0224371
rosa_laevigata RLG00000001905
rosa_multiflora Rmu_sc0025639.1_g000001
rosa_roxburghii Rroxscaffold_3G00234870
rosa_rugosa Rorug07G0222600
rosa_samantha Rh7AG380800 Rh7BG358500 Rh7DG367600
rosa_wichuraiana Rw7G031110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 464, 1468
AccB1I GGYRCC 1 cut(s) 1366
AccBSI CCGCTC 2 cut(s) 219, 594
AccII CGCG 1 cut(s) 320
AciI CCGC 7 cut(s) 111, 183, 201, 217, 318, 320, 594
AclWI GGATC 4 cut(s) 330, 560, 1265, 1310
AcsI RAATTY 1 cut(s) 656
AcuI CTGAAG 3 cut(s) 460, 596, 731
AfaI GTAC 4 cut(s) 471, 939, 1187, 1256
AfiI CCNNNNNNNGG 2 cut(s) 252, 950
AflIII ACRYGT 1 cut(s) 663
AgsI TTSAA 4 cut(s) 100, 314, 1261, 1279
AhlI ACTAGT 1 cut(s) 583
AjnI CCWGG 1 cut(s) 631
AluBI AGCT 5 cut(s) 574, 878, 1150, 1167, 1244
AluI AGCT 5 cut(s) 574, 878, 1150, 1167, 1244
Alw26I GTCTC 3 cut(s) 421, 494, 905
AlwI GGATC 4 cut(s) 330, 560, 1265, 1310
AoxI GGCC 3 cut(s) 452, 839, 941
ApeKI GCWGC 3 cut(s) 61, 186, 263
ApoI RAATTY 1 cut(s) 656
AseI ATTAAT 1 cut(s) 1041
AspS9I GGNCC 1 cut(s) 453
AsuC2I CCSGG 1 cut(s) 152
AsuHPI GGTGA 4 cut(s) 40, 235, 425, 1114
BaeGI GKGCMC 1 cut(s) 1369
BanI GGYRCC 1 cut(s) 1366
BbsI GAAGAC 2 cut(s) 49, 605
BbvI GCAGC 3 cut(s) 48, 198, 250
BccI CCATC 3 cut(s) 131, 388, 1378
BceAI ACGGC 2 cut(s) 777, 956
BciT130I CCWGG 1 cut(s) 633
BclI TGATCA 1 cut(s) 522
BcnI CCSGG 1 cut(s) 152
BcoDI GTCTC 3 cut(s) 421, 494, 905
BcuI ACTAGT 1 cut(s) 583
BfaI CTAG 3 cut(s) 584, 1073, 1142
BfmI CTRYAG 2 cut(s) 133, 1151
BglII AGATCT 1 cut(s) 362
BisI GCNGC 5 cut(s) 62, 184, 187, 264, 318
BlsI GCNGC 5 cut(s) 63, 185, 188, 265, 319
Bme1390I CCNGG 2 cut(s) 152, 633
BmgT120I GGNCC 1 cut(s) 453
BmiI GGNNCC 2 cut(s) 645, 1368
BmrFI CCNGG 2 cut(s) 152, 633
BmsI GCATC 3 cut(s) 204, 765, 1075
BpiI GAAGAC 2 cut(s) 49, 605
BpmI CTGGAG 1 cut(s) 271
BpuMI CCSGG 1 cut(s) 152
BsaAI YACGTR 1 cut(s) 664
BsaBI GATNNNNATC 1 cut(s) 521
BsaI GGTCTC 1 cut(s) 421
BsaJI CCNNGG 3 cut(s) 318, 619, 966
Bsc4I CCNNNNNNNGG 2 cut(s) 252, 950
Bse1I ACTGG 1 cut(s) 842
Bse3DI GCAATG 5 cut(s) 169, 751, 768, 1221, 1337
Bse8I GATNNNNATC 1 cut(s) 521
BseBI CCWGG 1 cut(s) 633
BseDI CCNNGG 3 cut(s) 318, 619, 966
BseGI GGATG 4 cut(s) 69, 123, 543, 840
BseJI GATNNNNATC 1 cut(s) 521
BseLI CCNNNNNNNGG 2 cut(s) 252, 950
BseMI GCAATG 5 cut(s) 169, 751, 768, 1221, 1337
BseMII CTCAG 5 cut(s) 453, 725, 1242, 1388, 1397
BseNI ACTGG 1 cut(s) 842
BseRI GAGGAG 6 cut(s) 56, 65, 68, 164, 202, 268
BseSI GKGCMC 1 cut(s) 1369
BseXI GCAGC 3 cut(s) 48, 198, 250
BseYI CCCAGC 1 cut(s) 1342
Bsh1236I CGCG 1 cut(s) 320
BshFI GGCC 3 cut(s) 454, 841, 943
BshNI GGYRCC 1 cut(s) 1366
BsiSI CCGG 2 cut(s) 151, 180
BslFI GGGAC 2 cut(s) 369, 1048
BslI CCNNNNNNNGG 2 cut(s) 252, 950
BsmAI GTCTC 3 cut(s) 421, 494, 905
BsmBI CGTCTC 1 cut(s) 905
BsmFI GGGAC 2 cut(s) 369, 1048
BsnI GGCC 3 cut(s) 454, 841, 943
Bso31I GGTCTC 1 cut(s) 421
Bsp1286I GDGCHC 1 cut(s) 1369
Bsp1407I TGTACA 2 cut(s) 469, 1185
Bsp143I GATC 7 cut(s) 322, 362, 382, 522, 565, 1270, 1302
BspACI CCGC 7 cut(s) 111, 183, 201, 217, 318, 320, 594
BspANI GGCC 3 cut(s) 454, 841, 943
BspCNI CTCAG 5 cut(s) 452, 724, 1241, 1387, 1396
BspFNI CGCG 1 cut(s) 320
BspLI GGNNCC 2 cut(s) 645, 1368
BspPI GGATC 4 cut(s) 330, 560, 1265, 1310
BspQI GCTCTTC 1 cut(s) 1051
BspT107I GGYRCC 1 cut(s) 1366
BspTNI GGTCTC 1 cut(s) 421
BsrBI CCGCTC 2 cut(s) 219, 594
BsrDI GCAATG 5 cut(s) 169, 751, 768, 1221, 1337
BsrGI TGTACA 2 cut(s) 469, 1185
BsrI ACTGG 1 cut(s) 842
BssECI CCNNGG 3 cut(s) 318, 619, 966
BssMI GATC 7 cut(s) 322, 362, 382, 522, 565, 1270, 1302
BssT1I CCWWGG 1 cut(s) 966
Bst2UI CCWGG 1 cut(s) 633
Bst4CI ACNGT 7 cut(s) 488, 604, 623, 871, 892, 916, 1219
Bst6I CTCTTC 4 cut(s) 16, 22, 1051, 1445
BstAUI TGTACA 2 cut(s) 469, 1185
BstBAI YACGTR 1 cut(s) 664
BstC8I GCNNGC 1 cut(s) 407
BstDEI CTNAG 6 cut(s) 390, 439, 711, 1228, 1374, 1383
BstDSI CCRYGG 2 cut(s) 318, 619
BstENI CCTNNNNNAGG 1 cut(s) 250
BstF5I GGATG 4 cut(s) 69, 123, 543, 840
BstFNI CGCG 1 cut(s) 320
BstKTI GATC 7 cut(s) 325, 365, 385, 525, 568, 1273, 1305
BstMAI GTCTC 3 cut(s) 421, 494, 905
BstMBI GATC 7 cut(s) 322, 362, 382, 522, 565, 1270, 1302
BstMWI GCNNNNNNNGC 6 cut(s) 192, 748, 770, 1232, 1241, 1353
BstNI CCWGG 1 cut(s) 633
BstNSI RCATGY 1 cut(s) 1429
BstSCI CCNGG 2 cut(s) 150, 631
BstSFI CTRYAG 2 cut(s) 133, 1151
BstSLI GKGCMC 1 cut(s) 1369
BstUI CGCG 1 cut(s) 320
BstV1I GCAGC 3 cut(s) 48, 198, 250
BstV2I GAAGAC 2 cut(s) 49, 605
BstX2I RGATCY 2 cut(s) 362, 1270
BstYI RGATCY 2 cut(s) 362, 1270
BsuRI GGCC 3 cut(s) 454, 841, 943
BtgI CCRYGG 2 cut(s) 318, 619
BtgZI GCGATG 1 cut(s) 153
BtsCI GGATG 4 cut(s) 69, 123, 543, 840
BtsI GCAGTG 2 cut(s) 1218, 1308
BtsIMutI CAGTG 4 cut(s) 647, 912, 1218, 1308
Cac8I GCNNGC 1 cut(s) 407
Cfr13I GGNCC 1 cut(s) 453
Cfr42I CCGCGG 1 cut(s) 321
CseI GACGC 1 cut(s) 1106
CsiI ACCWGGT 1 cut(s) 631
Csp6I GTAC 4 cut(s) 470, 938, 1186, 1255
CviAII CATG 2 cut(s) 1236, 1426
CviQI GTAC 4 cut(s) 470, 938, 1186, 1255
DdeI CTNAG 6 cut(s) 390, 439, 711, 1228, 1374, 1383
DpnI GATC 7 cut(s) 324, 364, 384, 524, 567, 1272, 1304
DpnII GATC 7 cut(s) 322, 362, 382, 522, 565, 1270, 1302
DraI TTTAAA 1 cut(s) 511
Eam1104I CTCTTC 4 cut(s) 16, 22, 1051, 1445
EarI CTCTTC 4 cut(s) 16, 22, 1051, 1445
EciI GGCGGA 1 cut(s) 190
Eco130I CCWWGG 1 cut(s) 966
Eco31I GGTCTC 1 cut(s) 421
Eco57I CTGAAG 3 cut(s) 460, 596, 731
EcoNI CCTNNNNNAGG 1 cut(s) 250
EcoRII CCWGG 1 cut(s) 631
EcoT14I CCWWGG 1 cut(s) 966
EcoT22I ATGCAT 1 cut(s) 1207
ErhI CCWWGG 1 cut(s) 966
Esp3I CGTCTC 1 cut(s) 905
FaeI CATG 2 cut(s) 1239, 1429
FaqI GGGAC 2 cut(s) 369, 1048
FatI CATG 2 cut(s) 1235, 1425
FauI CCCGC 3 cut(s) 118, 224, 587
FbaI TGATCA 1 cut(s) 522
Fnu4HI GCNGC 5 cut(s) 62, 184, 187, 264, 318
FokI GGATG 4 cut(s) 56, 110, 550, 847
Fsp4HI GCNGC 5 cut(s) 62, 184, 187, 264, 318
FspBI CTAG 3 cut(s) 584, 1073, 1142
GluI GCNGC 5 cut(s) 62, 184, 187, 264, 318
GsaI CCCAGC 1 cut(s) 1346
GsuI CTGGAG 1 cut(s) 271
HaeIII GGCC 3 cut(s) 454, 841, 943
HapII CCGG 2 cut(s) 151, 180
HgaI GACGC 1 cut(s) 1106
Hin1II CATG 2 cut(s) 1239, 1429
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HinfI GANTC 3 cut(s) 45, 231, 793
HpaII CCGG 2 cut(s) 151, 180
HphI GGTGA 4 cut(s) 40, 235, 425, 1114
Hpy166II GTNNAC 3 cut(s) 271, 472, 1255
Hpy188I TCNGA 6 cut(s) 230, 442, 479, 808, 1377, 1386
Hpy188III TCNNGA 7 cut(s) 16, 235, 250, 526, 727, 1053, 1082
Hpy8I GTNNAC 3 cut(s) 271, 472, 1255
HpyAV CCTTC 9 cut(s) 30, 185, 256, 392, 441, 474, 571, 724, 1285
HpyCH4III ACNGT 7 cut(s) 488, 604, 623, 871, 892, 916, 1219
HpyCH4IV ACGT 1 cut(s) 663
HpyF10VI GCNNNNNNNGC 6 cut(s) 192, 748, 770, 1232, 1241, 1353
HpyF3I CTNAG 6 cut(s) 390, 439, 711, 1228, 1374, 1383
HpySE526I ACGT 1 cut(s) 663
Hsp92II CATG 2 cut(s) 1239, 1429
Ksp22I TGATCA 1 cut(s) 522
KspI CCGCGG 1 cut(s) 321
Kzo9I GATC 7 cut(s) 322, 362, 382, 522, 565, 1270, 1302
LguI GCTCTTC 1 cut(s) 1051
LmnI GCTCC 4 cut(s) 69, 255, 649, 875
Lsp1109I GCAGC 3 cut(s) 48, 198, 250
LweI GCATC 3 cut(s) 204, 765, 1075
MabI ACCWGGT 1 cut(s) 631
MaeI CTAG 3 cut(s) 584, 1073, 1142
MaeII ACGT 1 cut(s) 663
MaeIII GTNAC 2 cut(s) 865, 1213
MalI GATC 7 cut(s) 324, 364, 384, 524, 567, 1272, 1304
MbiI CCGCTC 2 cut(s) 219, 594
MboI GATC 7 cut(s) 322, 362, 382, 522, 565, 1270, 1302
MboII GAAGA 9 cut(s) 33, 39, 45, 54, 139, 610, 1068, 1070, 1432
MflI RGATCY 2 cut(s) 362, 1270
MhlI GDGCHC 1 cut(s) 1369
MluCI AATT 8 cut(s) 100, 448, 656, 699, 817, 1038, 1405, 1460
MlyI GAGTC 1 cut(s) 39
MmeI TCCRAC 3 cut(s) 831, 853, 1158
Mph1103I ATGCAT 1 cut(s) 1207
MseI TTAA 7 cut(s) 86, 447, 510, 822, 1014, 1041, 1106
MslI CAYNNNNRTG 2 cut(s) 285, 1430
MspA1I CMGCKG 1 cut(s) 320
MspI CCGG 2 cut(s) 151, 180
MspR9I CCNGG 2 cut(s) 152, 633
MvaI CCWGG 1 cut(s) 633
MvnI CGCG 1 cut(s) 320
MwoI GCNNNNNNNGC 6 cut(s) 192, 748, 770, 1232, 1241, 1353
NciI CCSGG 1 cut(s) 152
NdeII GATC 7 cut(s) 322, 362, 382, 522, 565, 1270, 1302
NlaIII CATG 2 cut(s) 1239, 1429
NlaIV GGNNCC 2 cut(s) 645, 1368
NmuCI GTSAC 1 cut(s) 1213
NsiI ATGCAT 1 cut(s) 1207
NspI RCATGY 1 cut(s) 1429
PciSI GCTCTTC 1 cut(s) 1051
PfeI GAWTC 2 cut(s) 231, 793
PflFI GACNNNGTC 1 cut(s) 812
PfoI TCCNGGA 1 cut(s) 150
PkrI GCNGC 5 cut(s) 63, 185, 188, 265, 319
PleI GAGTC 1 cut(s) 39
PpsI GAGTC 1 cut(s) 39
Ppu21I YACGTR 1 cut(s) 664
PshBI ATTAAT 1 cut(s) 1041
PsiI TTATAA 2 cut(s) 464, 1468
Psp6I CCWGG 1 cut(s) 631
PspFI CCCAGC 1 cut(s) 1342
PspGI CCWGG 1 cut(s) 631
PspN4I GGNNCC 2 cut(s) 645, 1368
PspPI GGNCC 1 cut(s) 453
PsrI GAACNNNNNNTAC 4 cut(s) 707, 739, 1178, 1210
PsuI RGATCY 2 cut(s) 362, 1270
PsyI GACNNNGTC 1 cut(s) 812
RsaI GTAC 4 cut(s) 471, 939, 1187, 1256
RsaNI GTAC 4 cut(s) 470, 938, 1186, 1255
RseI CAYNNNNRTG 2 cut(s) 285, 1430
SacII CCGCGG 1 cut(s) 321
SapI GCTCTTC 1 cut(s) 1051
SaqAI TTAA 7 cut(s) 86, 447, 510, 822, 1014, 1041, 1106
SatI GCNGC 5 cut(s) 62, 184, 187, 264, 318
Sau3AI GATC 7 cut(s) 322, 362, 382, 522, 565, 1270, 1302
Sau96I GGNCC 1 cut(s) 453
SchI GAGTC 1 cut(s) 39
ScrFI CCNGG 2 cut(s) 152, 633
SduI GDGCHC 1 cut(s) 1369
SexAI ACCWGGT 1 cut(s) 631
SfaNI GCATC 3 cut(s) 204, 765, 1075
SfcI CTRYAG 2 cut(s) 133, 1151
Sfr303I CCGCGG 1 cut(s) 321
SgrBI CCGCGG 1 cut(s) 321
SmiMI CAYNNNNRTG 2 cut(s) 285, 1430
SpeI ACTAGT 1 cut(s) 583
Sse9I AATT 8 cut(s) 100, 448, 656, 699, 817, 1038, 1405, 1460
SsiI CCGC 7 cut(s) 111, 183, 201, 217, 318, 320, 594
SspMI CTAG 3 cut(s) 584, 1073, 1142
StyD4I CCNGG 2 cut(s) 150, 631
StyI CCWWGG 1 cut(s) 966
TaaI ACNGT 7 cut(s) 488, 604, 623, 871, 892, 916, 1219
TaiI ACGT 1 cut(s) 666
TaqI TCGA 2 cut(s) 234, 637
TasI AATT 8 cut(s) 100, 448, 656, 699, 817, 1038, 1405, 1460
TatI WGTACW 3 cut(s) 469, 1185, 1254
TauI GCSGC 2 cut(s) 186, 320
TfiI GAWTC 2 cut(s) 231, 793
Tru1I TTAA 7 cut(s) 86, 447, 510, 822, 1014, 1041, 1106
Tru9I TTAA 7 cut(s) 86, 447, 510, 822, 1014, 1041, 1106
TscAI CASTG 4 cut(s) 654, 919, 1218, 1315
TseFI GTSAC 1 cut(s) 1213
TseI GCWGC 3 cut(s) 61, 186, 263
Tsp45I GTSAC 1 cut(s) 1213
TspDTI ATGAA 2 cut(s) 156, 668
TspRI CASTG 4 cut(s) 654, 919, 1218, 1315
Tth111I GACNNNGTC 1 cut(s) 812
VspI ATTAAT 1 cut(s) 1041
XagI CCTNNNNNAGG 1 cut(s) 250
XapI RAATTY 1 cut(s) 656
XceI RCATGY 1 cut(s) 1429
XspI CTAG 3 cut(s) 584, 1073, 1142
Zsp2I ATGCAT 1 cut(s) 1207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.