Rorug07G0222600

Transmembrane protein 87B

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0011281
Physical Location & Seq
Reverse (-)
20157493 .. 20161630
4138 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0222600.1

Sequence Viewer

Length: 1320 bp
ATGGAGGGTCTGATCAAGGGTCTGATCGACGTGGCACTCGGCCACGGCGATAACAAGGAGGAAGACTCCGCTGCCGGCGACCGCGATCAGCGCTCCAGATCCACTTGGTCGGAGGTGGTGTCTGGGGAGCAGGATAACGACAGTGATCGCCCTCATCATGGGTACAACCAGAGCCACTGGAATAATAGACAGGAAGAGAGTAACTTGGGGCGTCAAGAGTGGGGCAATGTGAGTTCGGAACCTCCGAGGCGACCCCAGAGGAGTACACATGAGAGATATGAGAACAATGAAGATGGTGGGCCAATTGGTTATAACCAAAACTACTCCAGCAGAAAGGAGGAAGGCGAAGAAGGAAATAATGATGGTTGGGAGACTGTCGGAAAGAAGCCTCCAAGGCAATCACACAAGGTTCAGAAGGACCGGTGGCAGGGATATAAACGGCCTGCCAGTGAGCAACAATACTCTGATGAGGTTGAAGGAGGTGCTGGCATAGAACCTTCAGAAGACGAGCTTGCTGATCTGTCACAAGCTTGCAATAGATTCTGGGAACTTGATTCAAACCGTTTAGTGCCTGGAAAGGACTATGAAATTGACTGTGGTGAAGGGAAGAAGGTTTACCATAGGGGAGATTTAGCAGAAGGAAACTTATTTACCTGGCTGAGTGAAGATGTGTTCAGAAGGCCTACTTTTTCTCGTTTCTGTTCTCTTTTAGATAACTACAACCCAAATGAAGGCAGCAGAGAAGTCATCACATCTGAGGAGAAACAGGAGCAAGCTGCATTCATAGAAGAAATCAGCAGAACTGCTCCCATTAAATATCTGCACAGATATCTCTCACGCAAGGGCATTGTATCTGAGAACTATCAAGAGTTTAAAAGAACATTGACTGCTCTTTGGTTTGATCTTTATGGACGTGGTGGCACTTCTGGTTGTTCCTCTGCTTTTGAACATGTTTTTGTGGGAGAAATTAAGCAGCGTGGTGAAGAAGAGGTTTCTGGCTTCCACAATTGGATTCAGTTCTACCTTGAAGAAGCAAAGGGAACGGTTAACTATCAAGGTTATATATTCCCTCGTCGACGTGGGGAAATTCCAGACTCTGAAACCCAGTTGCTTACAATCCAGTTCGGATGGAATGGTGTCCTGAAAGCCGTATCAAGCACTTTAGTTGGGGTGAGCCCAGAATTTGAAGTTGCATTGTATACCTTGTGTTTCTACATGGGTGGAGAGGACAACCACATTCAGCTGGGTCCATACCCAGTTAACATCAAATGCTATCGCTTTGGAGATAGAATTGGATCTGTGTTTCCAATGGGAGAGTGA

Protein Analysis

439

Amino Acids

50.15

Weight (kDa)

5.03

Isoelectric Point (pI)

56.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XendoU PF09412 173 - 436 7.4e-95 Endoribonuclease XendoU
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011281)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01070 AT2G01070
fragaria_vesca FvH4_5g30110 FvH4_5g30110
malus_domestica MD08G1225000.v1.1 MD15G1418500.v1.1
prunus_persica Prupe.1G562600_v2.0.a1
pyrus_communis pycom08g19610 pycom08g19620 pycom15g37150
rosa_chinensis RchiOBHm_Chr7g0224311 RchiOBHm_Chr7g0224371
rosa_laevigata RLG00000001905
rosa_multiflora Rmu_sc0025639.1_g000001
rosa_roxburghii Rroxscaffold_3G00234870
rosa_rugosa Rorug07G0222600
rosa_samantha Rh7AG380800 Rh7BG358500 Rh7DG367600
rosa_wichuraiana Rw7G031110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 312
AccI GTMKAC 2 cut(s) 1075, 1199
AccII CGCG 1 cut(s) 84
AciI CCGC 2 cut(s) 69, 82
AclWI GGATC 2 cut(s) 93, 1303
AcoI YGGCCR 1 cut(s) 40
AcsI RAATTY 2 cut(s) 1086, 1181
AcuI CTGAAG 1 cut(s) 483
AcyI GRCGYC 1 cut(s) 211
AfaI GTAC 2 cut(s) 164, 265
AfeI AGCGCT 1 cut(s) 92
AfiI CCNNNNNNNGG 3 cut(s) 158, 427, 731
AflIII ACRYGT 1 cut(s) 949
AgeI ACCGGT 1 cut(s) 420
AgsI TTSAA 5 cut(s) 476, 558, 947, 1028, 1187
AjiI CACGTC 3 cut(s) 31, 914, 1079
AjnI CCWGG 2 cut(s) 571, 653
AluBI AGCT 4 cut(s) 511, 530, 776, 1243
AluI AGCT 4 cut(s) 511, 530, 776, 1243
Alw26I GTCTC 1 cut(s) 365
AlwI GGATC 2 cut(s) 93, 1303
AlwNI CAGNNNCTG 1 cut(s) 1097
Aor51HI AGCGCT 1 cut(s) 92
AoxI GGCC 4 cut(s) 40, 299, 440, 680
ApeKI GCWGC 4 cut(s) 71, 735, 776, 973
ApoI RAATTY 2 cut(s) 1086, 1181
AsiGI ACCGGT 1 cut(s) 420
AspLEI GCGC 1 cut(s) 93
AspS9I GGNCC 3 cut(s) 299, 418, 1247
AsuHPI GGTGA 3 cut(s) 611, 992, 1183
AvaII GGWCC 2 cut(s) 418, 1247
BanII GRGCYC 1 cut(s) 1178
BarI GAAGNNNNNNTAC 2 cut(s) 599, 631
BbsI GAAGAC 2 cut(s) 69, 510
BbvI GCAGC 4 cut(s) 58, 747, 763, 985
BccI CCATC 3 cut(s) 287, 356, 1122
BceAI ACGGC 3 cut(s) 61, 455, 1133
BciT130I CCWGG 2 cut(s) 573, 655
BclI TGATCA 1 cut(s) 12
BcoDI GTCTC 1 cut(s) 365
BfoI RGCGCY 1 cut(s) 94
BglI GCCNNNNNGGC 1 cut(s) 394
BisI GCNGC 4 cut(s) 72, 736, 777, 974
BlsI GCNGC 4 cut(s) 73, 737, 778, 975
Bme1390I CCNGG 2 cut(s) 573, 655
Bme18I GGWCC 2 cut(s) 418, 1247
BmgBI CACGTC 3 cut(s) 31, 914, 1079
BmgT120I GGNCC 3 cut(s) 299, 418, 1247
BmiI GGNNCC 2 cut(s) 240, 1248
BmrFI CCNGG 2 cut(s) 573, 655
BmrI ACTGGG 2 cut(s) 1099, 1250
BmuI ACTGGG 2 cut(s) 1099, 1250
BpiI GAAGAC 2 cut(s) 69, 510
BplI GAGNNNNNCTC 2 cut(s) 50, 82
BpmI CTGGAG 2 cut(s) 79, 310
BsaHI GRCGYC 1 cut(s) 211
BsaJI CCNNGG 3 cut(s) 43, 245, 392
BsaWI WCCGGW 1 cut(s) 420
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bsc4I CCNNNNNNNGG 3 cut(s) 158, 427, 731
Bse118I RCCGGY 2 cut(s) 74, 420
Bse1I ACTGG 5 cut(s) 182, 447, 1105, 1120, 1256
Bse3DI GCAATG 1 cut(s) 232
BseBI CCWGG 2 cut(s) 573, 655
BseDI CCNNGG 3 cut(s) 43, 245, 392
BseGI GGATG 1 cut(s) 1133
BseLI CCNNNNNNNGG 3 cut(s) 158, 427, 731
BseMI GCAATG 1 cut(s) 232
BseMII CTCAG 3 cut(s) 650, 747, 846
BseNI ACTGG 5 cut(s) 182, 447, 1105, 1120, 1256
BseRI GAGGAG 2 cut(s) 274, 773
BseXI GCAGC 4 cut(s) 58, 747, 763, 985
BseYI CCCAGC 1 cut(s) 1243
BsgI GTGCAG 1 cut(s) 806
Bsh1236I CGCG 1 cut(s) 84
Bsh1285I CGRYCG 1 cut(s) 82
BshFI GGCC 4 cut(s) 42, 301, 442, 682
BshTI ACCGGT 1 cut(s) 420
BsiEI CGRYCG 1 cut(s) 82
BsiSI CCGG 2 cut(s) 75, 421
BslI CCNNNNNNNGG 3 cut(s) 158, 427, 731
BsmAI GTCTC 1 cut(s) 365
BsmI GAATGC 1 cut(s) 779
BsnI GGCC 4 cut(s) 42, 301, 442, 682
Bsp1286I GDGCHC 1 cut(s) 1178
Bsp143I GATC 8 cut(s) 12, 24, 85, 98, 145, 517, 901, 1295
BspACI CCGC 2 cut(s) 69, 82
BspANI GGCC 4 cut(s) 42, 301, 442, 682
BspCNI CTCAG 3 cut(s) 651, 748, 847
BspFNI CGCG 1 cut(s) 84
BspLI GGNNCC 2 cut(s) 240, 1248
BspPI GGATC 2 cut(s) 93, 1303
BsrDI GCAATG 1 cut(s) 232
BsrFI RCCGGY 2 cut(s) 74, 420
BsrI ACTGG 5 cut(s) 182, 447, 1105, 1120, 1256
BssAI RCCGGY 2 cut(s) 74, 420
BssECI CCNNGG 3 cut(s) 43, 245, 392
BssMI GATC 8 cut(s) 12, 24, 85, 98, 145, 517, 901, 1295
BssNAI GTATAC 1 cut(s) 1200
BssNI GRCGYC 1 cut(s) 211
BssT1I CCWWGG 1 cut(s) 392
Bst1107I GTATAC 1 cut(s) 1200
Bst2UI CCWGG 2 cut(s) 573, 655
Bst4CI ACNGT 5 cut(s) 143, 376, 563, 596, 1045
Bst6I CTCTTC 2 cut(s) 189, 981
BstACI GRCGYC 1 cut(s) 211
BstC8I GCNNGC 6 cut(s) 76, 444, 487, 513, 532, 774
BstDEI CTNAG 3 cut(s) 659, 756, 855
BstDSI CCRYGG 1 cut(s) 43
BstF5I GGATG 1 cut(s) 1133
BstFNI CGCG 1 cut(s) 84
BstH2I RGCGCY 1 cut(s) 94
BstHHI GCGC 1 cut(s) 93
BstKTI GATC 8 cut(s) 15, 27, 88, 101, 148, 520, 904, 1298
BstMAI GTCTC 1 cut(s) 365
BstMBI GATC 8 cut(s) 12, 24, 85, 98, 145, 517, 901, 1295
BstMCI CGRYCG 1 cut(s) 82
BstMWI GCNNNNNNNGC 2 cut(s) 90, 394
BstNI CCWGG 2 cut(s) 573, 655
BstNSI RCATGY 1 cut(s) 953
BstSCI CCNGG 2 cut(s) 571, 653
BstUI CGCG 1 cut(s) 84
BstV1I GCAGC 4 cut(s) 58, 747, 763, 985
BstV2I GAAGAC 2 cut(s) 69, 510
BstX2I RGATCY 2 cut(s) 98, 1295
BstYI RGATCY 2 cut(s) 98, 1295
BstZ17I GTATAC 1 cut(s) 1200
BsuRI GGCC 4 cut(s) 42, 301, 442, 682
BtgI CCRYGG 1 cut(s) 43
BtrI CACGTC 3 cut(s) 31, 914, 1079
BtsCI GGATG 1 cut(s) 1133
BtsIMutI CAGTG 3 cut(s) 148, 175, 454
Cac8I GCNNGC 6 cut(s) 76, 444, 487, 513, 532, 774
CaiI CAGNNNCTG 1 cut(s) 1097
CfoI GCGC 1 cut(s) 93
Cfr10I RCCGGY 2 cut(s) 74, 420
Cfr13I GGNCC 3 cut(s) 299, 418, 1247
CseI GACGC 1 cut(s) 200
Csp6I GTAC 2 cut(s) 163, 264
CspAI ACCGGT 1 cut(s) 420
CviAII CATG 4 cut(s) 158, 269, 950, 1216
CviQI GTAC 2 cut(s) 163, 264
DdeI CTNAG 3 cut(s) 659, 756, 855
DpnI GATC 8 cut(s) 14, 26, 87, 100, 147, 519, 903, 1297
DpnII GATC 8 cut(s) 12, 24, 85, 98, 145, 517, 901, 1295
DraI TTTAAA 1 cut(s) 874
EaeI YGGCCR 1 cut(s) 40
Eam1104I CTCTTC 2 cut(s) 189, 981
EarI CTCTTC 2 cut(s) 189, 981
Eco130I CCWWGG 1 cut(s) 392
Eco147I AGGCCT 1 cut(s) 682
Eco24I GRGCYC 1 cut(s) 1178
Eco32I GATATC 1 cut(s) 830
Eco47I GGWCC 2 cut(s) 418, 1247
Eco47III AGCGCT 1 cut(s) 92
Eco57I CTGAAG 1 cut(s) 483
EcoRII CCWGG 2 cut(s) 571, 653
EcoRV GATATC 1 cut(s) 830
EcoT14I CCWWGG 1 cut(s) 392
EcoT38I GRGCYC 1 cut(s) 1178
ErhI CCWWGG 1 cut(s) 392
FaeI CATG 4 cut(s) 161, 272, 953, 1219
FalI AAGNNNNNCTT 4 cut(s) 495, 527, 670, 702
FatI CATG 4 cut(s) 157, 268, 949, 1215
FbaI TGATCA 1 cut(s) 12
FblI GTMKAC 2 cut(s) 1075, 1199
Fnu4HI GCNGC 4 cut(s) 72, 736, 777, 974
FokI GGATG 1 cut(s) 1140
FriOI GRGCYC 1 cut(s) 1178
Fsp4HI GCNGC 4 cut(s) 72, 736, 777, 974
GlaI GCGC 1 cut(s) 92
GluI GCNGC 4 cut(s) 72, 736, 777, 974
GsaI CCCAGC 1 cut(s) 1247
GsuI CTGGAG 2 cut(s) 79, 310
HaeII RGCGCY 1 cut(s) 94
HaeIII GGCC 4 cut(s) 42, 301, 442, 682
HapII CCGG 2 cut(s) 75, 421
HgaI GACGC 1 cut(s) 200
HhaI GCGC 1 cut(s) 93
Hin1I GRCGYC 1 cut(s) 211
Hin1II CATG 4 cut(s) 161, 272, 953, 1219
Hin6I GCGC 1 cut(s) 91
HinP1I GCGC 1 cut(s) 91
HincII GTYRAC 3 cut(s) 1048, 1076, 1261
HindII GTYRAC 3 cut(s) 1048, 1076, 1261
HindIII AAGCTT 1 cut(s) 528
HinfI GANTC 5 cut(s) 65, 540, 554, 1012, 1094
HpaI GTTAAC 2 cut(s) 1048, 1261
HpaII CCGG 2 cut(s) 75, 421
HphI GGTGA 3 cut(s) 611, 992, 1183
Hpy166II GTNNAC 6 cut(s) 266, 616, 1048, 1076, 1200, 1261
Hpy188III TCNNGA 5 cut(s) 96, 215, 866, 1091, 1141
Hpy8I GTNNAC 6 cut(s) 266, 616, 1048, 1076, 1200, 1261
Hpy99I CGWCG 3 cut(s) 32, 1077, 1080
HpyCH4III ACNGT 5 cut(s) 143, 376, 563, 596, 1045
HpyCH4IV ACGT 3 cut(s) 30, 913, 1078
HpyCH4V TGCA 4 cut(s) 534, 779, 823, 1193
HpyF10VI GCNNNNNNNGC 2 cut(s) 90, 394
HpyF3I CTNAG 3 cut(s) 659, 756, 855
HpySE526I ACGT 3 cut(s) 30, 913, 1078
Hsp92I GRCGYC 1 cut(s) 211
Hsp92II CATG 4 cut(s) 161, 272, 953, 1219
HspAI GCGC 1 cut(s) 91
KroI GCCGGC 1 cut(s) 74
KroNI GCCGGC 1 cut(s) 76
Ksp22I TGATCA 1 cut(s) 12
KspAI GTTAAC 2 cut(s) 1048, 1261
Kzo9I GATC 8 cut(s) 12, 24, 85, 98, 145, 517, 901, 1295
LmnI GCTCC 4 cut(s) 98, 127, 769, 811
Lsp1109I GCAGC 4 cut(s) 58, 747, 763, 985
MaeII ACGT 3 cut(s) 30, 913, 1078
MaeIII GTNAC 2 cut(s) 200, 522
MalI GATC 8 cut(s) 14, 26, 87, 100, 147, 519, 903, 1297
MboI GATC 8 cut(s) 12, 24, 85, 98, 145, 517, 901, 1295
MfeI CAATTG 2 cut(s) 303, 1006
MflI RGATCY 2 cut(s) 98, 1295
MhlI GDGCHC 1 cut(s) 1178
MluCI AATT 7 cut(s) 303, 588, 966, 1006, 1086, 1181, 1290
MlyI GAGTC 2 cut(s) 59, 1088
MmeI TCCRAC 2 cut(s) 90, 358
MroNI GCCGGC 1 cut(s) 74
MseI TTAA 5 cut(s) 813, 873, 969, 1047, 1260
MspA1I CMGCKG 2 cut(s) 71, 1243
MspI CCGG 2 cut(s) 75, 421
MspR9I CCNGG 2 cut(s) 573, 655
MunI CAATTG 2 cut(s) 303, 1006
Mva1269I GAATGC 1 cut(s) 779
MvaI CCWGG 2 cut(s) 573, 655
MvnI CGCG 1 cut(s) 84
MwoI GCNNNNNNNGC 2 cut(s) 90, 394
NaeI GCCGGC 1 cut(s) 76
NdeII GATC 8 cut(s) 12, 24, 85, 98, 145, 517, 901, 1295
NgoMIV GCCGGC 1 cut(s) 74
NlaIII CATG 4 cut(s) 161, 272, 953, 1219
NlaIV GGNNCC 2 cut(s) 240, 1248
NmeAIII GCCGAG 1 cut(s) 18
NmuCI GTSAC 1 cut(s) 522
NspI RCATGY 1 cut(s) 953
PceI AGGCCT 1 cut(s) 682
PciI ACATGT 1 cut(s) 949
PcsI WCGNNNNNNNCGW 2 cut(s) 45, 242
PctI GAATGC 1 cut(s) 779
PdiI GCCGGC 1 cut(s) 76
PfeI GAWTC 3 cut(s) 540, 554, 1012
PinAI ACCGGT 1 cut(s) 420
PkrI GCNGC 4 cut(s) 73, 737, 778, 975
PleI GAGTC 2 cut(s) 59, 1088
PpsI GAGTC 2 cut(s) 59, 1088
PscI ACATGT 1 cut(s) 949
PsiI TTATAA 1 cut(s) 312
Psp6I CCWGG 2 cut(s) 571, 653
PspFI CCCAGC 1 cut(s) 1243
PspGI CCWGG 2 cut(s) 571, 653
PspN4I GGNNCC 2 cut(s) 240, 1248
PspPI GGNCC 3 cut(s) 299, 418, 1247
PstNI CAGNNNCTG 1 cut(s) 1097
PsuI RGATCY 2 cut(s) 98, 1295
PvuII CAGCTG 1 cut(s) 1243
RsaI GTAC 2 cut(s) 164, 265
RsaNI GTAC 2 cut(s) 163, 264
SalI GTCGAC 1 cut(s) 1074
SaqAI TTAA 5 cut(s) 813, 873, 969, 1047, 1260
SatI GCNGC 4 cut(s) 72, 736, 777, 974
Sau3AI GATC 8 cut(s) 12, 24, 85, 98, 145, 517, 901, 1295
Sau96I GGNCC 3 cut(s) 299, 418, 1247
SchI GAGTC 2 cut(s) 59, 1088
ScrFI CCNGG 2 cut(s) 573, 655
SduI GDGCHC 1 cut(s) 1178
SgrDI CGTCGACG 1 cut(s) 1074
SinI GGWCC 2 cut(s) 418, 1247
Sse9I AATT 7 cut(s) 303, 588, 966, 1006, 1086, 1181, 1290
SseBI AGGCCT 1 cut(s) 682
SsiI CCGC 2 cut(s) 69, 82
StuI AGGCCT 1 cut(s) 682
StyD4I CCNGG 2 cut(s) 571, 653
StyI CCWWGG 1 cut(s) 392
TaaI ACNGT 5 cut(s) 143, 376, 563, 596, 1045
TaiI ACGT 3 cut(s) 33, 916, 1081
TaqI TCGA 2 cut(s) 27, 1075
TasI AATT 7 cut(s) 303, 588, 966, 1006, 1086, 1181, 1290
TatI WGTACW 1 cut(s) 263
TfiI GAWTC 3 cut(s) 540, 554, 1012
Tru1I TTAA 5 cut(s) 813, 873, 969, 1047, 1260
Tru9I TTAA 5 cut(s) 813, 873, 969, 1047, 1260
TscAI CASTG 3 cut(s) 148, 182, 454
TseFI GTSAC 1 cut(s) 522
TseI GCWGC 4 cut(s) 71, 735, 776, 973
Tsp45I GTSAC 1 cut(s) 522
TspDTI ATGAA 4 cut(s) 303, 600, 744, 772
TspRI CASTG 3 cut(s) 148, 182, 454
VpaK11BI GGWCC 2 cut(s) 418, 1247
XapI RAATTY 2 cut(s) 1086, 1181
XceI RCATGY 1 cut(s) 953
XmiI GTMKAC 2 cut(s) 1075, 1199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.