Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025639.1

Orthogroup ID

OG0011281

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2194

Gene Structure 2194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025639.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 995 bp

atggaaggttgtaagcaaggtgaagtcattaggagaccttctgccacagatgttaattggcccattgttataaatgtacacttcagaaggaacagtctctctaaaagtatggattttaaagagattttgatcacgaaaacggggatgtataacttgttttttgtagcctgtgatccaaagctgaaggaactagtaatgagcgggaagacggtatggaaaagcccccacggttatctacctggtcgaatggctccactgatgaaattttacgtgtatatggcacttgcttatgtgctgattggtgtaatttggctcactcagtatgtgaggttctggaaggatattctgcaacttcagcattgcatcacggctgttattgctcttggattgtttgagatgattctttggtattccgactatgtcaattttaataatacagggatgaggccagtttttcttacgacattagttgtaacagttggagctgtgagaaaaacagtttcccgtctccttatactcactgtttctatgggctatggagtagtacggcctactcttgggggtcttacctccaaggtgcttctgcttggaataacattttttctggcaacagagttgcttaacattaccgagtttgttgggacaattaatgatgtatcaggaagagcgagattatttctagttcttcctgatgctttcttggacgcatttttaatcttgtggattttcacctctctctccaaaacactagaacagctacagacaaagagaagctctgtcaagttggatatgtataggaagttctcaaatgcattagcagtgacagtcattgcctcagttgcatggatagcttatgaggtgtacttcaaagcaacagatcccttcaatgagaagtggcatagtgcttggatcatcactgctttctgggatattcttgcatttgcattgctgggcgttatctgctatctttgggcaccatctcagaactctcagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0012505 GO:0016020 GO:0031090 GO:0031984 GO:0031985 GO:0032580 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lung_7-TM_R

Protein Analysis

331

Amino Acids

37.67

Weight (kDa)

9.46

Isoelectric Point (pI)

38.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011281)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01070 AT2G01070
fragaria_vesca	FvH4_5g30110 FvH4_5g30110
malus_domestica	MD08G1225000.v1.1 MD15G1418500.v1.1
prunus_persica	Prupe.1G562600_v2.0.a1
pyrus_communis	pycom08g19610 pycom08g19620 pycom15g37150
rosa_chinensis	RchiOBHm_Chr7g0224311 RchiOBHm_Chr7g0224371
rosa_laevigata	RLG00000001905
rosa_multiflora	Rmu_sc0025639.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234870
rosa_rugosa	Rorug07G0222600
rosa_samantha	Rh7AG380800 Rh7BG358500 Rh7DG367600
rosa_wichuraiana	Rw7G031110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	71
AccB1I	GGYRCC	1 cut(s)	973
AccBSI	CCGCTC	1 cut(s)	201
AciI	CCGC	1 cut(s)	201
AclWI	GGATC	3 cut(s)	167, 872, 917
AcsI	RAATTY	1 cut(s)	263
AcuI	CTGAAG	3 cut(s)	67, 203, 338
AfaI	GTAC	3 cut(s)	78, 546, 863
AfiI	CCNNNNNNNGG	1 cut(s)	557
AflIII	ACRYGT	1 cut(s)	270
AgsI	TTSAA	2 cut(s)	868, 886
AhlI	ACTAGT	1 cut(s)	190
AjnI	CCWGG	1 cut(s)	238
AluBI	AGCT	5 cut(s)	181, 485, 757, 774, 851
AluI	AGCT	5 cut(s)	181, 485, 757, 774, 851
Alw26I	GTCTC	3 cut(s)	28, 101, 512
AlwI	GGATC	3 cut(s)	167, 872, 917
AoxI	GGCC	3 cut(s)	59, 446, 548
ApoI	RAATTY	1 cut(s)	263
AseI	ATTAAT	1 cut(s)	648
AspS9I	GGNCC	1 cut(s)	60
AsuHPI	GGTGA	2 cut(s)	32, 721
BaeGI	GKGCMC	1 cut(s)	976
BanI	GGYRCC	1 cut(s)	973
BbsI	GAAGAC	1 cut(s)	212
BccI	CCATC	1 cut(s)	985
BceAI	ACGGC	2 cut(s)	384, 563
BciT130I	CCWGG	1 cut(s)	240
BclI	TGATCA	1 cut(s)	129
BcoDI	GTCTC	3 cut(s)	28, 101, 512
BcuI	ACTAGT	1 cut(s)	190
BfaI	CTAG	3 cut(s)	191, 680, 749
BfmI	CTRYAG	1 cut(s)	758
Bme1390I	CCNGG	1 cut(s)	240
BmgT120I	GGNCC	1 cut(s)	60
BmiI	GGNNCC	2 cut(s)	252, 975
BmrFI	CCNGG	1 cut(s)	240
BmsI	GCATC	2 cut(s)	372, 682
BpiI	GAAGAC	1 cut(s)	212
BsaAI	YACGTR	1 cut(s)	271
BsaBI	GATNNNNATC	1 cut(s)	128
BsaI	GGTCTC	1 cut(s)	28
BsaJI	CCNNGG	2 cut(s)	226, 573
Bsc4I	CCNNNNNNNGG	1 cut(s)	557
Bse1I	ACTGG	1 cut(s)	449
Bse3DI	GCAATG	3 cut(s)	358, 828, 944
Bse8I	GATNNNNATC	1 cut(s)	128
BseBI	CCWGG	1 cut(s)	240
BseDI	CCNNGG	2 cut(s)	226, 573
BseGI	GGATG	2 cut(s)	150, 447
BseJI	GATNNNNATC	1 cut(s)	128
BseLI	CCNNNNNNNGG	1 cut(s)	557
BseMI	GCAATG	3 cut(s)	358, 828, 944
BseMII	CTCAG	3 cut(s)	332, 849, 995
BseNI	ACTGG	1 cut(s)	449
BseSI	GKGCMC	1 cut(s)	976
BseYI	CCCAGC	1 cut(s)	949
BshFI	GGCC	3 cut(s)	61, 448, 550
BshNI	GGYRCC	1 cut(s)	973
BslFI	GGGAC	1 cut(s)	655
BslI	CCNNNNNNNGG	1 cut(s)	557
BsmAI	GTCTC	3 cut(s)	28, 101, 512
BsmBI	CGTCTC	1 cut(s)	512
BsmFI	GGGAC	1 cut(s)	655
BsnI	GGCC	3 cut(s)	61, 448, 550
Bso31I	GGTCTC	1 cut(s)	28
Bsp1286I	GDGCHC	1 cut(s)	976
Bsp1407I	TGTACA	1 cut(s)	76
Bsp143I	GATC	4 cut(s)	129, 172, 877, 909
BspACI	CCGC	1 cut(s)	201
BspANI	GGCC	3 cut(s)	61, 448, 550
BspCNI	CTCAG	3 cut(s)	331, 848, 994
BspLI	GGNNCC	2 cut(s)	252, 975
BspPI	GGATC	3 cut(s)	167, 872, 917
BspQI	GCTCTTC	1 cut(s)	658
BspT107I	GGYRCC	1 cut(s)	973
BspTNI	GGTCTC	1 cut(s)	28
BsrBI	CCGCTC	1 cut(s)	201
BsrDI	GCAATG	3 cut(s)	358, 828, 944
BsrGI	TGTACA	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	449
BssECI	CCNNGG	2 cut(s)	226, 573
BssMI	GATC	4 cut(s)	129, 172, 877, 909
BssT1I	CCWWGG	1 cut(s)	573
Bst2UI	CCWGG	1 cut(s)	240
Bst4CI	ACNGT	7 cut(s)	95, 211, 230, 478, 499, 523, 826
Bst6I	CTCTTC	1 cut(s)	658
BstAUI	TGTACA	1 cut(s)	76
BstBAI	YACGTR	1 cut(s)	271
BstDEI	CTNAG	4 cut(s)	318, 835, 981, 990
BstDSI	CCRYGG	1 cut(s)	226
BstF5I	GGATG	2 cut(s)	150, 447
BstKTI	GATC	4 cut(s)	132, 175, 880, 912
BstMAI	GTCTC	3 cut(s)	28, 101, 512
BstMBI	GATC	4 cut(s)	129, 172, 877, 909
BstMWI	GCNNNNNNNGC	5 cut(s)	355, 377, 839, 848, 960
BstNI	CCWGG	1 cut(s)	240
BstSCI	CCNGG	1 cut(s)	238
BstSFI	CTRYAG	1 cut(s)	758
BstSLI	GKGCMC	1 cut(s)	976
BstV2I	GAAGAC	1 cut(s)	212
BstX2I	RGATCY	1 cut(s)	877
BstYI	RGATCY	1 cut(s)	877
BsuRI	GGCC	3 cut(s)	61, 448, 550
BtgI	CCRYGG	1 cut(s)	226
BtsCI	GGATG	2 cut(s)	150, 447
BtsI	GCAGTG	2 cut(s)	825, 915
BtsIMutI	CAGTG	4 cut(s)	254, 519, 825, 915
Cfr13I	GGNCC	1 cut(s)	60
CseI	GACGC	1 cut(s)	713
CsiI	ACCWGGT	1 cut(s)	238
Csp6I	GTAC	3 cut(s)	77, 545, 862
CviAII	CATG	1 cut(s)	843
CviQI	GTAC	3 cut(s)	77, 545, 862
DdeI	CTNAG	4 cut(s)	318, 835, 981, 990
DpnI	GATC	4 cut(s)	131, 174, 879, 911
DpnII	GATC	4 cut(s)	129, 172, 877, 909
DraI	TTTAAA	1 cut(s)	118
Eam1104I	CTCTTC	1 cut(s)	658
EarI	CTCTTC	1 cut(s)	658
Eco130I	CCWWGG	1 cut(s)	573
Eco31I	GGTCTC	1 cut(s)	28
Eco57I	CTGAAG	3 cut(s)	67, 203, 338
EcoRII	CCWGG	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	573
EcoT22I	ATGCAT	1 cut(s)	814
ErhI	CCWWGG	1 cut(s)	573
Esp3I	CGTCTC	1 cut(s)	512
FaeI	CATG	1 cut(s)	846
FaqI	GGGAC	1 cut(s)	655
FatI	CATG	1 cut(s)	842
FauI	CCCGC	1 cut(s)	194
FbaI	TGATCA	1 cut(s)	129
FokI	GGATG	2 cut(s)	157, 454
FspBI	CTAG	3 cut(s)	191, 680, 749
GsaI	CCCAGC	1 cut(s)	953
HaeIII	GGCC	3 cut(s)	61, 448, 550
HgaI	GACGC	1 cut(s)	713
Hin1II	CATG	1 cut(s)	846
HinfI	GANTC	1 cut(s)	400
HphI	GGTGA	2 cut(s)	32, 721
Hpy166II	GTNNAC	2 cut(s)	79, 862
Hpy188I	TCNGA	4 cut(s)	86, 415, 984, 993
Hpy188III	TCNNGA	4 cut(s)	133, 334, 660, 689
Hpy8I	GTNNAC	2 cut(s)	79, 862
HpyAV	CCTTC	5 cut(s)	48, 81, 178, 331, 892
HpyCH4III	ACNGT	7 cut(s)	95, 211, 230, 478, 499, 523, 826
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	6 cut(s)	349, 363, 812, 842, 938, 944
HpyF10VI	GCNNNNNNNGC	5 cut(s)	355, 377, 839, 848, 960
HpyF3I	CTNAG	4 cut(s)	318, 835, 981, 990
HpySE526I	ACGT	1 cut(s)	270
Hsp92II	CATG	1 cut(s)	846
Ksp22I	TGATCA	1 cut(s)	129
Kzo9I	GATC	4 cut(s)	129, 172, 877, 909
LguI	GCTCTTC	1 cut(s)	658
LmnI	GCTCC	2 cut(s)	256, 482
LweI	GCATC	2 cut(s)	372, 682
MabI	ACCWGGT	1 cut(s)	238
MaeI	CTAG	3 cut(s)	191, 680, 749
MaeII	ACGT	1 cut(s)	270
MaeIII	GTNAC	2 cut(s)	472, 820
MalI	GATC	4 cut(s)	131, 174, 879, 911
MbiI	CCGCTC	1 cut(s)	201
MboI	GATC	4 cut(s)	129, 172, 877, 909
MboII	GAAGA	3 cut(s)	217, 675, 677
MflI	RGATCY	1 cut(s)	877
MhlI	GDGCHC	1 cut(s)	976
MluCI	AATT	5 cut(s)	55, 263, 306, 424, 645
MmeI	TCCRAC	3 cut(s)	438, 460, 765
MnlI	CCTC	6 cut(s)	321, 438, 580, 742, 844, 850
Mph1103I	ATGCAT	1 cut(s)	814
MseI	TTAA	6 cut(s)	54, 117, 429, 621, 648, 713
MspR9I	CCNGG	1 cut(s)	240
MvaI	CCWGG	1 cut(s)	240
MwoI	GCNNNNNNNGC	5 cut(s)	355, 377, 839, 848, 960
NdeII	GATC	4 cut(s)	129, 172, 877, 909
NlaIII	CATG	1 cut(s)	846
NlaIV	GGNNCC	2 cut(s)	252, 975
NmuCI	GTSAC	1 cut(s)	820
NsiI	ATGCAT	1 cut(s)	814
PciSI	GCTCTTC	1 cut(s)	658
PfeI	GAWTC	1 cut(s)	400
PflFI	GACNNNGTC	1 cut(s)	419
Ppu21I	YACGTR	1 cut(s)	271
PshBI	ATTAAT	1 cut(s)	648
PsiI	TTATAA	1 cut(s)	71
Psp6I	CCWGG	1 cut(s)	238
PspFI	CCCAGC	1 cut(s)	949
PspGI	CCWGG	1 cut(s)	238
PspN4I	GGNNCC	2 cut(s)	252, 975
PspPI	GGNCC	1 cut(s)	60
PsrI	GAACNNNNNNTAC	4 cut(s)	314, 346, 785, 817
PsuI	RGATCY	1 cut(s)	877
PsyI	GACNNNGTC	1 cut(s)	419
RsaI	GTAC	3 cut(s)	78, 546, 863
RsaNI	GTAC	3 cut(s)	77, 545, 862
SapI	GCTCTTC	1 cut(s)	658
SaqAI	TTAA	6 cut(s)	54, 117, 429, 621, 648, 713
Sau3AI	GATC	4 cut(s)	129, 172, 877, 909
Sau96I	GGNCC	1 cut(s)	60
ScrFI	CCNGG	1 cut(s)	240
SduI	GDGCHC	1 cut(s)	976
SexAI	ACCWGGT	1 cut(s)	238
SfaNI	GCATC	2 cut(s)	372, 682
SfcI	CTRYAG	1 cut(s)	758
SpeI	ACTAGT	1 cut(s)	190
Sse9I	AATT	5 cut(s)	55, 263, 306, 424, 645
SsiI	CCGC	1 cut(s)	201
SspMI	CTAG	3 cut(s)	191, 680, 749
StyD4I	CCNGG	1 cut(s)	238
StyI	CCWWGG	1 cut(s)	573
TaaI	ACNGT	7 cut(s)	95, 211, 230, 478, 499, 523, 826
TaiI	ACGT	1 cut(s)	273
TaqI	TCGA	1 cut(s)	244
TasI	AATT	5 cut(s)	55, 263, 306, 424, 645
TatI	WGTACW	2 cut(s)	76, 861
TfiI	GAWTC	1 cut(s)	400
Tru1I	TTAA	6 cut(s)	54, 117, 429, 621, 648, 713
Tru9I	TTAA	6 cut(s)	54, 117, 429, 621, 648, 713
TscAI	CASTG	4 cut(s)	261, 526, 825, 922
TseFI	GTSAC	1 cut(s)	820
Tsp45I	GTSAC	1 cut(s)	820
TspDTI	ATGAA	1 cut(s)	275
TspRI	CASTG	4 cut(s)	261, 526, 825, 922
Tth111I	GACNNNGTC	1 cut(s)	419
VspI	ATTAAT	1 cut(s)	648
XapI	RAATTY	1 cut(s)	263
XspI	CTAG	3 cut(s)	191, 680, 749
Zsp2I	ATGCAT	1 cut(s)	814

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.