Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0011281

Physical Location & Seq

Genomic Coordinates Forward (+)

21025682 .. 21031612

Gene Structure 5931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g30110.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1539 bp

ATGGATTTCACATTTCAGAAAAGTAGCACAAGAATCACCACCACCCACATTGCCCTCCTCCTCCTCTTGACATCATTCTTCAATTCCAATCCGGCCAACGCCTCCATCCATATCTACCACAAAGACGTCTTCCGCGAAGTTGGCAACGCCTTCCTCCTCTCCGGCGGCAGCGAAGGAATCGCCGCCTCTCCCTCCTCCCGCTCTTATATCCGATTTGAGAATATCACCTTCTGGAGGAATGAGGCTGCAGCTGACAGGAAGCGTAGCAATGGGCTGATACAGGTCATCATTTTCGAAGCTGCGGATCGGAATAATATCGGCGGTTCTGCTTATGGAGGACAGAGATCTATATGTTGCACCCCTGATCTTGCAAAGATGGAAGGTTGTAAGCAAGGGGAGGTCATTAGGAGACCTTCTGCCGCTGATGCTAATTGGCCTGTTGTGTTGAATGTCAAGTTCAGAGGGAAGAGTCTGTCTAAAGAGATGGATTACAAAGAGATTTCGATCACGAAAACGGGGATGTATAACTTGTTTTTTGTGGCATGTGATCCGAAACTGAAGGAATTGGTAATGAGTGGGAAGACGGTGTGGAGAAGTCCTGATGGTTATCTACCTGGTCGAATGGCTCCACTGATGAAGTTTTTCGTGTTCATGGCACTTGCTTATGTGCTGATTGGTGTAATTTGGCTTATTCAGTATGTGAGGTTCTGGGATGATATTCTGCAACTTCAGCATTGCATCACGGCTGTAATTGCTCTTGGATTGTTTGAGATGATTCTTTGGTATGCTGACTATGTCAATTTTAATAATACAGGGATGAGGCCAGTTTTTCTTACGACATTGGTTGTGACGGTTGGAGCTGTGAGAAAAACTGTTTCCCGTCTCCTTATCCTCACTGTTTCTATGGGCTATGGTGTAGTACGGCCTACTCTTGGGGGTCTTACCTCCAAGGTGCTTTTGCTTGGAGTAACATTTTTTCTGGCCACAGAGTTGCTTAATATTACCGAGTATGTTGGGACAATTAATGATGTATCAGGAAGAGCGAGATTATTTCTTGTTCTTCCTGATGCTTTCTTGGATGCATTTTTAATCTTGTGGATTTTCACTTCTCTCTCAAAAACACTAGAACAGCTACAGACAAAGAGAAGCTCTGTCAAGTTGGATATGTATAGGAAGTTCTCAAATGCATTAGCAGTGACAGTCATTGCCTCACTCGCATGGATTGCTTATGAGGTGTACTTCAAAGCAACAGATCCCTTCAACGAGAAGTGGCATAGTGCTTGGATCATCACTGCTTTCTGGGATATTCTTGCATTTGCATTGCTGTGCGTTATCTGCTATCTTTGGGCACCATCTCAGAACTCTCAGCGGTATGCATACTCAGAGAAGCTAGGAGAAGATTCTGATGATGAAGAATCTCAGTCTCTAACTGCGGGCAAGCCAGAGGGTGATATCAGTTTAGTCAATCAAGAAGTGAAGGATGTTGGAAGCACGGGAGATTCTGATGAAGAGGACACAGAAGAAGATAAGAGGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0012505 GO:0016020 GO:0031090 GO:0031984 GO:0031985 GO:0032580 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lung_7-TM_R

Protein Analysis

513

Amino Acids

57.45

Weight (kDa)

6.08

Isoelectric Point (pI)

44.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GOST_TM	PF06814	210 - 456	2.7e-89	GOST, seven transmembrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011281)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01070 AT2G01070
fragaria_vesca	FvH4_5g30110 FvH4_5g30110
malus_domestica	MD08G1225000.v1.1 MD15G1418500.v1.1
prunus_persica	Prupe.1G562600_v2.0.a1
pyrus_communis	pycom08g19610 pycom08g19620 pycom15g37150
rosa_chinensis	RchiOBHm_Chr7g0224311 RchiOBHm_Chr7g0224371
rosa_laevigata	RLG00000001905
rosa_multiflora	Rmu_sc0025639.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234870
rosa_rugosa	Rorug07G0222600
rosa_samantha	Rh7AG380800 Rh7BG358500 Rh7DG367600
rosa_wichuraiana	Rw7G031110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	129
AccB1I	GGYRCC	1 cut(s)	1348
AccBSI	CCGCTC	1 cut(s)	201
AccII	CGCG	1 cut(s)	135
AciI	CCGC	9 cut(s)	133, 165, 183, 199, 302, 321, 420, 1369, 1433
AclWI	GGATC	4 cut(s)	312, 542, 1247, 1292
AcoI	YGGCCR	2 cut(s)	93, 981
AcuI	CTGAAG	2 cut(s)	578, 713
AcyI	GRCGYC	1 cut(s)	126
AfaI	GTAC	2 cut(s)	921, 1238
AfiI	CCNNNNNNNGG	2 cut(s)	234, 932
AgsI	TTSAA	4 cut(s)	82, 448, 1243, 1261
AjnI	CCWGG	1 cut(s)	613
AluBI	AGCT	6 cut(s)	251, 299, 860, 1132, 1149, 1390
AluI	AGCT	6 cut(s)	251, 299, 860, 1132, 1149, 1390
Alw26I	GTCTC	3 cut(s)	403, 887, 1428
AlwI	GGATC	4 cut(s)	312, 542, 1247, 1292
AoxI	GGCC	5 cut(s)	93, 434, 821, 923, 981
ApeKI	GCWGC	4 cut(s)	168, 245, 248, 299
AseI	ATTAAT	1 cut(s)	1023
Asp700I	GAANNNNTTC	1 cut(s)	641
AsuHPI	GGTGA	3 cut(s)	28, 217, 1460
AsuII	TTCGAA	1 cut(s)	294
BaeGI	GKGCMC	1 cut(s)	1351
BalI	TGGCCA	1 cut(s)	983
BanI	GGYRCC	1 cut(s)	1348
BbsI	GAAGAC	2 cut(s)	121, 587
BbvI	GCAGC	4 cut(s)	180, 232, 260, 286
BccI	CCATC	5 cut(s)	113, 370, 478, 596, 1360
BceAI	ACGGC	2 cut(s)	759, 938
BciT130I	CCWGG	1 cut(s)	615
BcoDI	GTCTC	3 cut(s)	403, 887, 1428
BfaI	CTAG	2 cut(s)	1124, 1391
BfmI	CTRYAG	2 cut(s)	246, 1133
BglII	AGATCT	1 cut(s)	344
BisI	GCNGC	7 cut(s)	166, 169, 183, 246, 249, 300, 420
BlsI	GCNGC	7 cut(s)	167, 170, 184, 247, 250, 301, 421
Bme1390I	CCNGG	1 cut(s)	615
BmiI	GGNNCC	2 cut(s)	627, 1350
BmrFI	CCNGG	1 cut(s)	615
BmsI	GCATC	4 cut(s)	415, 747, 1057, 1069
BpiI	GAAGAC	2 cut(s)	121, 587
BpmI	CTGGAG	1 cut(s)	253
Bpu14I	TTCGAA	1 cut(s)	294
BsaBI	GATNNNNATC	2 cut(s)	503, 606
BsaHI	GRCGYC	1 cut(s)	126
BsaI	GGTCTC	1 cut(s)	403
BsaJI	CCNNGG	1 cut(s)	948
Bsc4I	CCNNNNNNNGG	2 cut(s)	234, 932
Bse1I	ACTGG	1 cut(s)	824
Bse3DI	GCAATG	5 cut(s)	48, 274, 733, 1203, 1319
Bse8I	GATNNNNATC	2 cut(s)	503, 606
BseBI	CCWGG	1 cut(s)	615
BseDI	CCNNGG	1 cut(s)	948
BseGI	GGATG	6 cut(s)	105, 525, 718, 822, 1084, 1486
BseJI	GATNNNNATC	2 cut(s)	503, 606
BseLI	CCNNNNNNNGG	2 cut(s)	234, 932
BseMI	GCAATG	5 cut(s)	48, 274, 733, 1203, 1319
BseMII	CTCAG	4 cut(s)	1370, 1379, 1395, 1433
BseNI	ACTGG	1 cut(s)	824
BseRI	GAGGAG	5 cut(s)	47, 50, 53, 146, 184
BseSI	GKGCMC	1 cut(s)	1351
BseXI	GCAGC	4 cut(s)	180, 232, 260, 286
Bsh1236I	CGCG	1 cut(s)	135
BshFI	GGCC	5 cut(s)	95, 436, 823, 925, 983
BshNI	GGYRCC	1 cut(s)	1348
BsiSI	CCGG	2 cut(s)	92, 162
BslFI	GGGAC	1 cut(s)	1030
BslI	CCNNNNNNNGG	2 cut(s)	234, 932
BsmAI	GTCTC	3 cut(s)	403, 887, 1428
BsmBI	CGTCTC	1 cut(s)	887
BsmFI	GGGAC	1 cut(s)	1030
BsnI	GGCC	5 cut(s)	95, 436, 823, 925, 983
Bso31I	GGTCTC	1 cut(s)	403
Bsp119I	TTCGAA	1 cut(s)	294
Bsp1286I	GDGCHC	1 cut(s)	1351
Bsp143I	GATC	7 cut(s)	304, 344, 364, 504, 547, 1252, 1284
BspACI	CCGC	9 cut(s)	133, 165, 183, 199, 302, 321, 420, 1369, 1433
BspANI	GGCC	5 cut(s)	95, 436, 823, 925, 983
BspCNI	CTCAG	4 cut(s)	1369, 1378, 1394, 1432
BspFNI	CGCG	1 cut(s)	135
BspLI	GGNNCC	2 cut(s)	627, 1350
BspMAI	CTGCAG	1 cut(s)	250
BspPI	GGATC	4 cut(s)	312, 542, 1247, 1292
BspQI	GCTCTTC	1 cut(s)	1033
BspT104I	TTCGAA	1 cut(s)	294
BspT107I	GGYRCC	1 cut(s)	1348
BspTNI	GGTCTC	1 cut(s)	403
BsrBI	CCGCTC	1 cut(s)	201
BsrDI	GCAATG	5 cut(s)	48, 274, 733, 1203, 1319
BsrI	ACTGG	1 cut(s)	824
BssECI	CCNNGG	1 cut(s)	948
BssMI	GATC	7 cut(s)	304, 344, 364, 504, 547, 1252, 1284
BssNI	GRCGYC	1 cut(s)	126
BssT1I	CCWWGG	1 cut(s)	948
Bst2UI	CCWGG	1 cut(s)	615
Bst4CI	ACNGT	5 cut(s)	586, 853, 874, 898, 1201
Bst6I	CTCTTC	3 cut(s)	461, 1033, 1503
BstACI	GRCGYC	1 cut(s)	126
BstAPI	GCANNNNNTGC	1 cut(s)	1223
BstBI	TTCGAA	1 cut(s)	294
BstC8I	GCNNGC	2 cut(s)	1435, 1439
BstDEI	CTNAG	4 cut(s)	1356, 1365, 1381, 1419
BstENI	CCTNNNNNAGG	1 cut(s)	232
BstF5I	GGATG	6 cut(s)	105, 525, 718, 822, 1084, 1486
BstFNI	CGCG	1 cut(s)	135
BstKTI	GATC	7 cut(s)	307, 347, 367, 507, 550, 1255, 1287
BstMAI	GTCTC	3 cut(s)	403, 887, 1428
BstMBI	GATC	7 cut(s)	304, 344, 364, 504, 547, 1252, 1284
BstMWI	GCNNNNNNNGC	7 cut(s)	141, 425, 730, 752, 1214, 1223, 1335
BstNI	CCWGG	1 cut(s)	615
BstNSI	RCATGY	1 cut(s)	546
BstSCI	CCNGG	1 cut(s)	613
BstSFI	CTRYAG	2 cut(s)	246, 1133
BstSLI	GKGCMC	1 cut(s)	1351
BstUI	CGCG	1 cut(s)	135
BstV1I	GCAGC	4 cut(s)	180, 232, 260, 286
BstV2I	GAAGAC	2 cut(s)	121, 587
BstX2I	RGATCY	2 cut(s)	344, 1252
BstYI	RGATCY	2 cut(s)	344, 1252
BsuRI	GGCC	5 cut(s)	95, 436, 823, 925, 983
BtsCI	GGATG	6 cut(s)	105, 525, 718, 822, 1084, 1486
BtsI	GCAGTG	2 cut(s)	1200, 1290
BtsIMutI	CAGTG	4 cut(s)	629, 894, 1200, 1290
Cac8I	GCNNGC	2 cut(s)	1435, 1439
CsiI	ACCWGGT	1 cut(s)	613
Csp6I	GTAC	2 cut(s)	920, 1237
CspCI	CAANNNNNGTGG	2 cut(s)	31, 66
CviAII	CATG	3 cut(s)	543, 652, 1218
CviQI	GTAC	2 cut(s)	920, 1237
DdeI	CTNAG	4 cut(s)	1356, 1365, 1381, 1419
DpnI	GATC	7 cut(s)	306, 346, 366, 506, 549, 1254, 1286
DpnII	GATC	7 cut(s)	304, 344, 364, 504, 547, 1252, 1284
EaeI	YGGCCR	2 cut(s)	93, 981
Eam1104I	CTCTTC	3 cut(s)	461, 1033, 1503
EarI	CTCTTC	3 cut(s)	461, 1033, 1503
Eco130I	CCWWGG	1 cut(s)	948
Eco31I	GGTCTC	1 cut(s)	403
Eco32I	GATATC	1 cut(s)	1453
Eco57I	CTGAAG	2 cut(s)	578, 713
EcoNI	CCTNNNNNAGG	1 cut(s)	232
EcoRII	CCWGG	1 cut(s)	613
EcoRV	GATATC	1 cut(s)	1453
EcoT14I	CCWWGG	1 cut(s)	948
EcoT22I	ATGCAT	3 cut(s)	1084, 1189, 1378
ErhI	CCWWGG	1 cut(s)	948
Esp3I	CGTCTC	1 cut(s)	887
FaeI	CATG	3 cut(s)	546, 655, 1221
FaqI	GGGAC	1 cut(s)	1030
FatI	CATG	3 cut(s)	542, 651, 1217
FauI	CCCGC	2 cut(s)	206, 1426
Fnu4HI	GCNGC	7 cut(s)	166, 169, 183, 246, 249, 300, 420
FokI	GGATG	6 cut(s)	92, 532, 725, 829, 1091, 1493
Fsp4HI	GCNGC	7 cut(s)	166, 169, 183, 246, 249, 300, 420
FspBI	CTAG	2 cut(s)	1124, 1391
GluI	GCNGC	7 cut(s)	166, 169, 183, 246, 249, 300, 420
GsuI	CTGGAG	1 cut(s)	253
HaeIII	GGCC	5 cut(s)	95, 436, 823, 925, 983
HapII	CCGG	2 cut(s)	92, 162
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	3 cut(s)	546, 655, 1221
HinfI	GANTC	7 cut(s)	33, 177, 469, 775, 1400, 1415, 1499
HpaII	CCGG	2 cut(s)	92, 162
HphI	GGTGA	3 cut(s)	28, 217, 1460
Hpy166II	GTNNAC	1 cut(s)	1237
Hpy188I	TCNGA	9 cut(s)	18, 212, 309, 461, 552, 1359, 1384, 1405, 1504
Hpy188III	TCNNGA	7 cut(s)	67, 232, 508, 599, 1035, 1064, 1469
Hpy8I	GTNNAC	1 cut(s)	1237
HpyAV	CCTTC	8 cut(s)	160, 167, 238, 374, 423, 553, 1267, 1471
HpyCH4III	ACNGT	5 cut(s)	586, 853, 874, 898, 1201
HpyCH4IV	ACGT	1 cut(s)	126
HpyF10VI	GCNNNNNNNGC	7 cut(s)	141, 425, 730, 752, 1214, 1223, 1335
HpyF3I	CTNAG	4 cut(s)	1356, 1365, 1381, 1419
HpySE526I	ACGT	1 cut(s)	126
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	3 cut(s)	546, 655, 1221
Kzo9I	GATC	7 cut(s)	304, 344, 364, 504, 547, 1252, 1284
LguI	GCTCTTC	1 cut(s)	1033
LmnI	GCTCC	2 cut(s)	631, 857
Lsp1109I	GCAGC	4 cut(s)	180, 232, 260, 286
LweI	GCATC	4 cut(s)	415, 747, 1057, 1069
MabI	ACCWGGT	1 cut(s)	613
MaeI	CTAG	2 cut(s)	1124, 1391
MaeII	ACGT	1 cut(s)	126
MaeIII	GTNAC	3 cut(s)	847, 967, 1195
MalI	GATC	7 cut(s)	306, 346, 366, 506, 549, 1254, 1286
MbiI	CCGCTC	1 cut(s)	201
MboI	GATC	7 cut(s)	304, 344, 364, 504, 547, 1252, 1284
MflI	RGATCY	2 cut(s)	344, 1252
MhlI	GDGCHC	1 cut(s)	1351
MlsI	TGGCCA	1 cut(s)	983
MluCI	AATT	7 cut(s)	82, 430, 563, 681, 750, 799, 1020
MluNI	TGGCCA	1 cut(s)	983
MlyI	GAGTC	1 cut(s)	478
MmeI	TCCRAC	3 cut(s)	835, 1140, 1465
Mox20I	TGGCCA	1 cut(s)	983
Mph1103I	ATGCAT	3 cut(s)	1084, 1189, 1378
MroXI	GAANNNNTTC	1 cut(s)	641
MscI	TGGCCA	1 cut(s)	983
MseI	TTAA	4 cut(s)	804, 996, 1023, 1088
MslI	CAYNNNNRTG	2 cut(s)	1216, 1324
Msp20I	TGGCCA	1 cut(s)	983
MspA1I	CMGCKG	3 cut(s)	251, 422, 1369
MspI	CCGG	2 cut(s)	92, 162
MspR9I	CCNGG	1 cut(s)	615
MvaI	CCWGG	1 cut(s)	615
MvnI	CGCG	1 cut(s)	135
MwoI	GCNNNNNNNGC	7 cut(s)	141, 425, 730, 752, 1214, 1223, 1335
NdeII	GATC	7 cut(s)	304, 344, 364, 504, 547, 1252, 1284
NlaIII	CATG	3 cut(s)	546, 655, 1221
NlaIV	GGNNCC	2 cut(s)	627, 1350
NmuCI	GTSAC	2 cut(s)	847, 1195
NsiI	ATGCAT	3 cut(s)	1084, 1189, 1378
NspI	RCATGY	1 cut(s)	546
NspV	TTCGAA	1 cut(s)	294
PciSI	GCTCTTC	1 cut(s)	1033
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PdmI	GAANNNNTTC	1 cut(s)	641
PfeI	GAWTC	6 cut(s)	33, 177, 775, 1400, 1415, 1499
PflFI	GACNNNGTC	1 cut(s)	794
PkrI	GCNGC	7 cut(s)	167, 170, 184, 247, 250, 301, 421
PleI	GAGTC	1 cut(s)	477
PpsI	GAGTC	1 cut(s)	477
PshBI	ATTAAT	1 cut(s)	1023
Psp6I	CCWGG	1 cut(s)	613
PspGI	CCWGG	1 cut(s)	613
PspN4I	GGNNCC	2 cut(s)	627, 1350
PsrI	GAACNNNNNNTAC	4 cut(s)	689, 721, 1160, 1192
PstI	CTGCAG	1 cut(s)	250
PsuI	RGATCY	2 cut(s)	344, 1252
PsyI	GACNNNGTC	1 cut(s)	794
PvuII	CAGCTG	1 cut(s)	251
RsaI	GTAC	2 cut(s)	921, 1238
RsaNI	GTAC	2 cut(s)	920, 1237
RseI	CAYNNNNRTG	2 cut(s)	1216, 1324
SapI	GCTCTTC	1 cut(s)	1033
SaqAI	TTAA	4 cut(s)	804, 996, 1023, 1088
SatI	GCNGC	7 cut(s)	166, 169, 183, 246, 249, 300, 420
Sau3AI	GATC	7 cut(s)	304, 344, 364, 504, 547, 1252, 1284
SchI	GAGTC	1 cut(s)	478
ScrFI	CCNGG	1 cut(s)	615
SduI	GDGCHC	1 cut(s)	1351
SexAI	ACCWGGT	1 cut(s)	613
SfaNI	GCATC	4 cut(s)	415, 747, 1057, 1069
SfcI	CTRYAG	2 cut(s)	246, 1133
SfuI	TTCGAA	1 cut(s)	294
SmiMI	CAYNNNNRTG	2 cut(s)	1216, 1324
Sse9I	AATT	7 cut(s)	82, 430, 563, 681, 750, 799, 1020
SsiI	CCGC	9 cut(s)	133, 165, 183, 199, 302, 321, 420, 1369, 1433
SspI	AATATT	1 cut(s)	1000
SspMI	CTAG	2 cut(s)	1124, 1391
StyD4I	CCNGG	1 cut(s)	613
StyI	CCWWGG	1 cut(s)	948
TaaI	ACNGT	5 cut(s)	586, 853, 874, 898, 1201
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	3 cut(s)	294, 503, 619
TasI	AATT	7 cut(s)	82, 430, 563, 681, 750, 799, 1020
TatI	WGTACW	1 cut(s)	1236
TauI	GCSGC	3 cut(s)	168, 185, 422
TfiI	GAWTC	6 cut(s)	33, 177, 775, 1400, 1415, 1499
Tru1I	TTAA	4 cut(s)	804, 996, 1023, 1088
Tru9I	TTAA	4 cut(s)	804, 996, 1023, 1088
TscAI	CASTG	4 cut(s)	636, 901, 1200, 1297
TseFI	GTSAC	2 cut(s)	847, 1195
TseI	GCWGC	4 cut(s)	168, 245, 248, 299
Tsp45I	GTSAC	2 cut(s)	847, 1195
TspDTI	ATGAA	4 cut(s)	640, 650, 1425, 1521
TspRI	CASTG	4 cut(s)	636, 901, 1200, 1297
Tth111I	GACNNNGTC	1 cut(s)	794
VspI	ATTAAT	1 cut(s)	1023
XagI	CCTNNNNNAGG	1 cut(s)	232
XceI	RCATGY	1 cut(s)	546
XmnI	GAANNNNTTC	1 cut(s)	641
XspI	CTAG	2 cut(s)	1124, 1391
ZraI	GACGTC	1 cut(s)	127
Zsp2I	ATGCAT	3 cut(s)	1084, 1189, 1378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.