Rh7AG380800

Transmembrane protein 87B

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0011281
Physical Location & Seq
Reverse (-)
49759558 .. 49762856
3299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG380800.1

Sequence Viewer

Length: 1542 bp
ATGGATTTCACATTCCAGAGAAGAGGAAGAGGAAGAAGGAGAAGACTCACCGACCTCTCGCTGCTCCTCCTCCTTTTAACATTATTCAATTCCACTCCGGCCAACGCCTCCATCCATATCTACAGCGATGAAATCTTCCGGGAAGTCGGCAATGCTTTCCTCCTCTCCGGCGGCAGCGAAGGCATCTCCGCCTCTCCCTCCTCCCGCGCTTTTATCCGATTCGAGAATATCACCTTCTGGAGGAGCGAGGCTGCTGTTGACAAGAAGCATAGTAATGGGTTGATACAGGTTATCGTTTTTGAAGCCGCGGATCGTAATAATATCGGTGGTTCTGCTTATGGGGGACAGAGATCTATATGTTGCACCCCTGATCTTGCTAAGATGGAAGGTTGTAAGCAAGGTGAAGTCATTAGGAGACCTTCTGCCACAGATGTTAATTGGCCCATTGTTATAAATGTACACTTCAGGAGGAACAGTCTCTCTAAAAATATGGATTATAAAGAGATTTTGATCACGAAAACGGGGATGTATAACTTGTTTTTTGTAGCCTGTGATCCAAAGCTGAAGGAACTAGTAATGAGCGGGAAGACGGTATGGAAAAGCCCCGATGGTTATCTACCTGGTCGAATGGCTCCACTGATGAAATTTTACGTGTATATGGCACTTGCTTATGTGCTGATTGGTGTAATTTGGCTCACTCAGTATGTGAGGTTCTGGAAGGATATTCTGCAACTTCAGCATTGCATCACGGCTGTCATTGCTCTTGGATTGTTTGAGATGATTCTTTGGTATTCCGACTATGTCAATTTTAATAATACAGGGATGAGGCCAGTTTTTCTTACGACATTAGTTGTAACAGTTGGAGCTGTGAGAAAAACAGTTTCCCGTCTCCTTATCCTCACTGTTTCTATGGGCTATGGTGTAGTACGGCCTACTCTTGGGGGTCTTACCTCCAAGGTGCTTCTGCTTGGAATAACATTTTTTCTGGCAACAGAGTTGCTTAACATTACCGAGTTTGTTGGGACAATTAATGATGTATCAGGAAGAGCGAGATTATTTCTAGTTCTTCCTGATGCTTTCTTGGACGCATTTTTAATCTTGTGGATTTTCACCTCTCTCTCCAAAACACTAGAACAGCTACAGACAAAGAGAAGCTCTGTCAAGTTGGATATGTATAGGAAGTTCTCAAATGCATTAGCAGTGACAGTCATTGCCTCAGTTGCATGGATAGCTTATGAGGTGTACTTCAAAGCAACAGATCCCTTCAATGAGAAGTGGCATAGTGCTTGGATCATCACTGCTTTCTGGGATATTCTTGCATTTGCATTGCTGGGCGTTATCTGCTATCTTTGGGCACCATCTCAGAACTCTCAGAGGTATGCATACTCAGAGAAGCTAGGAGAAGAATCTGATGATGAAGAATCTCAGACTCTAACTGGGGGCAAGCCAGAGGGTGATATCAGCTTAGTCAATCAAGAAGAGAAGAGTGGTGGAAGCACCGGAGATTCTGATGAGGACACAGAAGAAGATAAGAGGGAATGA

Protein Analysis

513

Amino Acids

57.73

Weight (kDa)

7.57

Isoelectric Point (pI)

47.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GOST_TM PF06814 212 - 458 2.8e-89 GOST, seven transmembrane domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011281)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01070 AT2G01070
fragaria_vesca FvH4_5g30110 FvH4_5g30110
malus_domestica MD08G1225000.v1.1 MD15G1418500.v1.1
prunus_persica Prupe.1G562600_v2.0.a1
pyrus_communis pycom08g19610 pycom08g19620 pycom15g37150
rosa_chinensis RchiOBHm_Chr7g0224311 RchiOBHm_Chr7g0224371
rosa_laevigata RLG00000001905
rosa_multiflora Rmu_sc0025639.1_g000001
rosa_roxburghii Rroxscaffold_3G00234870
rosa_rugosa Rorug07G0222600
rosa_samantha Rh7AG380800 Rh7BG358500 Rh7DG367600
rosa_wichuraiana Rw7G031110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 452, 498
AccB1I GGYRCC 1 cut(s) 1354
AccBSI CCGCTC 1 cut(s) 582
AccII CGCG 2 cut(s) 207, 308
AciI CCGC 6 cut(s) 171, 189, 205, 306, 308, 582
AclWI GGATC 4 cut(s) 318, 548, 1253, 1298
AcoI YGGCCR 1 cut(s) 99
AcsI RAATTY 1 cut(s) 644
AcuI CTGAAG 3 cut(s) 448, 584, 719
AfaI GTAC 3 cut(s) 459, 927, 1244
AfiI CCNNNNNNNGG 2 cut(s) 240, 938
AflIII ACRYGT 1 cut(s) 651
AgsI TTSAA 4 cut(s) 88, 302, 1249, 1267
AhlI ACTAGT 1 cut(s) 571
AjnI CCWGG 1 cut(s) 619
AluBI AGCT 7 cut(s) 562, 866, 1138, 1155, 1232, 1396, 1464
AluI AGCT 7 cut(s) 562, 866, 1138, 1155, 1232, 1396, 1464
Alw26I GTCTC 3 cut(s) 409, 482, 893
AlwI GGATC 4 cut(s) 318, 548, 1253, 1298
AoxI GGCC 4 cut(s) 99, 440, 827, 929
ApeKI GCWGC 3 cut(s) 61, 174, 251
ApoI RAATTY 1 cut(s) 644
AseI ATTAAT 1 cut(s) 1029
AspLEI GCGC 1 cut(s) 209
AspS9I GGNCC 1 cut(s) 441
AsuC2I CCSGG 1 cut(s) 140
AsuHPI GGTGA 5 cut(s) 40, 223, 413, 1102, 1466
BaeGI GKGCMC 1 cut(s) 1357
BanI GGYRCC 1 cut(s) 1354
BbsI GAAGAC 2 cut(s) 49, 593
BbvI GCAGC 3 cut(s) 48, 186, 238
BccI CCATC 4 cut(s) 119, 376, 602, 1366
BceAI ACGGC 2 cut(s) 765, 944
BciT130I CCWGG 1 cut(s) 621
BclI TGATCA 1 cut(s) 510
BcnI CCSGG 1 cut(s) 140
BcoDI GTCTC 3 cut(s) 409, 482, 893
BcuI ACTAGT 1 cut(s) 571
BfaI CTAG 4 cut(s) 572, 1061, 1130, 1397
BfmI CTRYAG 2 cut(s) 121, 1139
BglII AGATCT 1 cut(s) 350
BisI GCNGC 5 cut(s) 62, 172, 175, 252, 306
BlsI GCNGC 5 cut(s) 63, 173, 176, 253, 307
Bme1390I CCNGG 2 cut(s) 140, 621
BmgT120I GGNCC 1 cut(s) 441
BmiI GGNNCC 2 cut(s) 633, 1356
BmrFI CCNGG 2 cut(s) 140, 621
BmrI ACTGGG 1 cut(s) 1446
BmsI GCATC 3 cut(s) 192, 753, 1063
BmuI ACTGGG 1 cut(s) 1446
BpiI GAAGAC 2 cut(s) 49, 593
BpmI CTGGAG 1 cut(s) 259
BpuMI CCSGG 1 cut(s) 140
BsaAI YACGTR 1 cut(s) 652
BsaBI GATNNNNATC 2 cut(s) 509, 612
BsaI GGTCTC 1 cut(s) 409
BsaJI CCNNGG 2 cut(s) 306, 954
BsaWI WCCGGW 1 cut(s) 1499
BsaXI ACNNNNNCTCC 2 cut(s) 460, 490
Bsc4I CCNNNNNNNGG 2 cut(s) 240, 938
Bse1I ACTGG 2 cut(s) 830, 1441
Bse3DI GCAATG 5 cut(s) 157, 739, 756, 1209, 1325
Bse8I GATNNNNATC 2 cut(s) 509, 612
BseBI CCWGG 1 cut(s) 621
BseDI CCNNGG 2 cut(s) 306, 954
BseGI GGATG 3 cut(s) 111, 531, 828
BseJI GATNNNNATC 2 cut(s) 509, 612
BseLI CCNNNNNNNGG 2 cut(s) 240, 938
BseMI GCAATG 5 cut(s) 157, 739, 756, 1209, 1325
BseMII CTCAG 6 cut(s) 713, 1230, 1376, 1385, 1401, 1439
BseNI ACTGG 2 cut(s) 830, 1441
BseRI GAGGAG 5 cut(s) 56, 59, 152, 190, 256
BseSI GKGCMC 1 cut(s) 1357
BseXI GCAGC 3 cut(s) 48, 186, 238
BseYI CCCAGC 1 cut(s) 1330
Bsh1236I CGCG 2 cut(s) 207, 308
BshFI GGCC 4 cut(s) 101, 442, 829, 931
BshNI GGYRCC 1 cut(s) 1354
BsiSI CCGG 4 cut(s) 98, 139, 168, 1500
BslFI GGGAC 2 cut(s) 357, 1036
BslI CCNNNNNNNGG 2 cut(s) 240, 938
BsmAI GTCTC 3 cut(s) 409, 482, 893
BsmBI CGTCTC 1 cut(s) 893
BsmFI GGGAC 2 cut(s) 357, 1036
BsnI GGCC 4 cut(s) 101, 442, 829, 931
Bso31I GGTCTC 1 cut(s) 409
Bsp1286I GDGCHC 1 cut(s) 1357
Bsp1407I TGTACA 1 cut(s) 457
Bsp143I GATC 7 cut(s) 310, 350, 370, 510, 553, 1258, 1290
BspACI CCGC 6 cut(s) 171, 189, 205, 306, 308, 582
BspANI GGCC 4 cut(s) 101, 442, 829, 931
BspCNI CTCAG 6 cut(s) 712, 1229, 1375, 1384, 1400, 1438
BspFNI CGCG 2 cut(s) 207, 308
BspLI GGNNCC 2 cut(s) 633, 1356
BspPI GGATC 4 cut(s) 318, 548, 1253, 1298
BspQI GCTCTTC 1 cut(s) 1039
BspT107I GGYRCC 1 cut(s) 1354
BspTNI GGTCTC 1 cut(s) 409
BsrBI CCGCTC 1 cut(s) 582
BsrDI GCAATG 5 cut(s) 157, 739, 756, 1209, 1325
BsrGI TGTACA 1 cut(s) 457
BsrI ACTGG 2 cut(s) 830, 1441
BssECI CCNNGG 2 cut(s) 306, 954
BssMI GATC 7 cut(s) 310, 350, 370, 510, 553, 1258, 1290
BssT1I CCWWGG 1 cut(s) 954
Bst2UI CCWGG 1 cut(s) 621
Bst4CI ACNGT 6 cut(s) 476, 592, 859, 880, 904, 1207
Bst6I CTCTTC 5 cut(s) 16, 22, 1039, 1473, 1478
BstAUI TGTACA 1 cut(s) 457
BstBAI YACGTR 1 cut(s) 652
BstC8I GCNNGC 1 cut(s) 1445
BstDEI CTNAG 8 cut(s) 378, 699, 1216, 1362, 1371, 1387, 1425, 1465
BstDSI CCRYGG 1 cut(s) 306
BstENI CCTNNNNNAGG 1 cut(s) 238
BstF5I GGATG 3 cut(s) 111, 531, 828
BstFNI CGCG 2 cut(s) 207, 308
BstHHI GCGC 1 cut(s) 209
BstKTI GATC 7 cut(s) 313, 353, 373, 513, 556, 1261, 1293
BstMAI GTCTC 3 cut(s) 409, 482, 893
BstMBI GATC 7 cut(s) 310, 350, 370, 510, 553, 1258, 1290
BstMWI GCNNNNNNNGC 6 cut(s) 180, 736, 758, 1220, 1229, 1341
BstNI CCWGG 1 cut(s) 621
BstSCI CCNGG 2 cut(s) 138, 619
BstSFI CTRYAG 2 cut(s) 121, 1139
BstSLI GKGCMC 1 cut(s) 1357
BstUI CGCG 2 cut(s) 207, 308
BstV1I GCAGC 3 cut(s) 48, 186, 238
BstV2I GAAGAC 2 cut(s) 49, 593
BstX2I RGATCY 2 cut(s) 350, 1258
BstYI RGATCY 2 cut(s) 350, 1258
BsuRI GGCC 4 cut(s) 101, 442, 829, 931
BtgI CCRYGG 1 cut(s) 306
BtgZI GCGATG 1 cut(s) 141
BtsCI GGATG 3 cut(s) 111, 531, 828
BtsI GCAGTG 2 cut(s) 1206, 1296
BtsIMutI CAGTG 4 cut(s) 635, 900, 1206, 1296
Cac8I GCNNGC 1 cut(s) 1445
CfoI GCGC 1 cut(s) 209
Cfr13I GGNCC 1 cut(s) 441
Cfr42I CCGCGG 1 cut(s) 309
CseI GACGC 1 cut(s) 1094
CsiI ACCWGGT 1 cut(s) 619
Csp6I GTAC 3 cut(s) 458, 926, 1243
CviAII CATG 1 cut(s) 1224
CviQI GTAC 3 cut(s) 458, 926, 1243
DdeI CTNAG 8 cut(s) 378, 699, 1216, 1362, 1371, 1387, 1425, 1465
DpnI GATC 7 cut(s) 312, 352, 372, 512, 555, 1260, 1292
DpnII GATC 7 cut(s) 310, 350, 370, 510, 553, 1258, 1290
EaeI YGGCCR 1 cut(s) 99
Eam1104I CTCTTC 5 cut(s) 16, 22, 1039, 1473, 1478
EarI CTCTTC 5 cut(s) 16, 22, 1039, 1473, 1478
EciI GGCGGA 1 cut(s) 178
Eco130I CCWWGG 1 cut(s) 954
Eco31I GGTCTC 1 cut(s) 409
Eco32I GATATC 1 cut(s) 1459
Eco57I CTGAAG 3 cut(s) 448, 584, 719
EcoNI CCTNNNNNAGG 1 cut(s) 238
EcoRII CCWGG 1 cut(s) 619
EcoRV GATATC 1 cut(s) 1459
EcoT14I CCWWGG 1 cut(s) 954
EcoT22I ATGCAT 2 cut(s) 1195, 1384
ErhI CCWWGG 1 cut(s) 954
Esp3I CGTCTC 1 cut(s) 893
FaeI CATG 1 cut(s) 1227
FaqI GGGAC 2 cut(s) 357, 1036
FatI CATG 1 cut(s) 1223
FauI CCCGC 2 cut(s) 212, 575
FbaI TGATCA 1 cut(s) 510
Fnu4HI GCNGC 5 cut(s) 62, 172, 175, 252, 306
FokI GGATG 3 cut(s) 98, 538, 835
Fsp4HI GCNGC 5 cut(s) 62, 172, 175, 252, 306
FspBI CTAG 4 cut(s) 572, 1061, 1130, 1397
GlaI GCGC 1 cut(s) 208
GluI GCNGC 5 cut(s) 62, 172, 175, 252, 306
GsaI CCCAGC 1 cut(s) 1334
GsuI CTGGAG 1 cut(s) 259
HaeIII GGCC 4 cut(s) 101, 442, 829, 931
HapII CCGG 4 cut(s) 98, 139, 168, 1500
HgaI GACGC 1 cut(s) 1094
HhaI GCGC 1 cut(s) 209
Hin1II CATG 1 cut(s) 1227
Hin6I GCGC 1 cut(s) 207
HinP1I GCGC 1 cut(s) 207
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HinfI GANTC 7 cut(s) 45, 219, 781, 1406, 1421, 1429, 1505
HpaII CCGG 4 cut(s) 98, 139, 168, 1500
HphI GGTGA 5 cut(s) 40, 223, 413, 1102, 1466
Hpy166II GTNNAC 3 cut(s) 259, 460, 1243
Hpy188I TCNGA 8 cut(s) 218, 796, 1365, 1374, 1390, 1411, 1428, 1510
Hpy188III TCNNGA 9 cut(s) 16, 223, 238, 466, 514, 715, 1041, 1070, 1475
Hpy8I GTNNAC 3 cut(s) 259, 460, 1243
HpyAV CCTTC 8 cut(s) 30, 173, 244, 380, 429, 559, 712, 1273
HpyCH4III ACNGT 6 cut(s) 476, 592, 859, 880, 904, 1207
HpyCH4IV ACGT 1 cut(s) 651
HpyCH4V TGCA 8 cut(s) 363, 730, 744, 1193, 1223, 1319, 1325, 1382
HpyF10VI GCNNNNNNNGC 6 cut(s) 180, 736, 758, 1220, 1229, 1341
HpyF3I CTNAG 8 cut(s) 378, 699, 1216, 1362, 1371, 1387, 1425, 1465
HpySE526I ACGT 1 cut(s) 651
Hsp92II CATG 1 cut(s) 1227
HspAI GCGC 1 cut(s) 207
Ksp22I TGATCA 1 cut(s) 510
KspI CCGCGG 1 cut(s) 309
Kzo9I GATC 7 cut(s) 310, 350, 370, 510, 553, 1258, 1290
LguI GCTCTTC 1 cut(s) 1039
LmnI GCTCC 4 cut(s) 69, 243, 637, 863
Lsp1109I GCAGC 3 cut(s) 48, 186, 238
LweI GCATC 3 cut(s) 192, 753, 1063
MabI ACCWGGT 1 cut(s) 619
MaeI CTAG 4 cut(s) 572, 1061, 1130, 1397
MaeII ACGT 1 cut(s) 651
MaeIII GTNAC 2 cut(s) 853, 1201
MalI GATC 7 cut(s) 312, 352, 372, 512, 555, 1260, 1292
MbiI CCGCTC 1 cut(s) 582
MboI GATC 7 cut(s) 310, 350, 370, 510, 553, 1258, 1290
MflI RGATCY 2 cut(s) 350, 1258
MhlI GDGCHC 1 cut(s) 1357
MluCI AATT 6 cut(s) 88, 436, 644, 687, 805, 1026
MlyI GAGTC 2 cut(s) 39, 1423
MmeI TCCRAC 3 cut(s) 819, 841, 1146
Mph1103I ATGCAT 2 cut(s) 1195, 1384
MseI TTAA 6 cut(s) 77, 435, 810, 1002, 1029, 1094
MslI CAYNNNNRTG 1 cut(s) 273
MspA1I CMGCKG 1 cut(s) 308
MspI CCGG 4 cut(s) 98, 139, 168, 1500
MspR9I CCNGG 2 cut(s) 140, 621
MvaI CCWGG 1 cut(s) 621
MvnI CGCG 2 cut(s) 207, 308
MwoI GCNNNNNNNGC 6 cut(s) 180, 736, 758, 1220, 1229, 1341
NciI CCSGG 1 cut(s) 140
NdeII GATC 7 cut(s) 310, 350, 370, 510, 553, 1258, 1290
NlaIII CATG 1 cut(s) 1227
NlaIV GGNNCC 2 cut(s) 633, 1356
NmuCI GTSAC 1 cut(s) 1201
NsiI ATGCAT 2 cut(s) 1195, 1384
PciSI GCTCTTC 1 cut(s) 1039
PfeI GAWTC 5 cut(s) 219, 781, 1406, 1421, 1505
PflFI GACNNNGTC 1 cut(s) 800
PfoI TCCNGGA 1 cut(s) 138
PkrI GCNGC 5 cut(s) 63, 173, 176, 253, 307
PleI GAGTC 2 cut(s) 39, 1423
PpsI GAGTC 2 cut(s) 39, 1423
Ppu21I YACGTR 1 cut(s) 652
PshBI ATTAAT 1 cut(s) 1029
PsiI TTATAA 2 cut(s) 452, 498
Psp6I CCWGG 1 cut(s) 619
PspFI CCCAGC 1 cut(s) 1330
PspGI CCWGG 1 cut(s) 619
PspN4I GGNNCC 2 cut(s) 633, 1356
PspPI GGNCC 1 cut(s) 441
PsrI GAACNNNNNNTAC 4 cut(s) 695, 727, 1166, 1198
PsuI RGATCY 2 cut(s) 350, 1258
PsyI GACNNNGTC 1 cut(s) 800
RsaI GTAC 3 cut(s) 459, 927, 1244
RsaNI GTAC 3 cut(s) 458, 926, 1243
RseI CAYNNNNRTG 1 cut(s) 273
SacII CCGCGG 1 cut(s) 309
SapI GCTCTTC 1 cut(s) 1039
SaqAI TTAA 6 cut(s) 77, 435, 810, 1002, 1029, 1094
SatI GCNGC 5 cut(s) 62, 172, 175, 252, 306
Sau3AI GATC 7 cut(s) 310, 350, 370, 510, 553, 1258, 1290
Sau96I GGNCC 1 cut(s) 441
SchI GAGTC 2 cut(s) 39, 1423
ScrFI CCNGG 2 cut(s) 140, 621
SduI GDGCHC 1 cut(s) 1357
SexAI ACCWGGT 1 cut(s) 619
SfaNI GCATC 3 cut(s) 192, 753, 1063
SfcI CTRYAG 2 cut(s) 121, 1139
Sfr303I CCGCGG 1 cut(s) 309
SgrBI CCGCGG 1 cut(s) 309
SmiMI CAYNNNNRTG 1 cut(s) 273
SpeI ACTAGT 1 cut(s) 571
Sse9I AATT 6 cut(s) 88, 436, 644, 687, 805, 1026
SsiI CCGC 6 cut(s) 171, 189, 205, 306, 308, 582
SspMI CTAG 4 cut(s) 572, 1061, 1130, 1397
StyD4I CCNGG 2 cut(s) 138, 619
StyI CCWWGG 1 cut(s) 954
TaaI ACNGT 6 cut(s) 476, 592, 859, 880, 904, 1207
TaiI ACGT 1 cut(s) 654
TaqI TCGA 2 cut(s) 222, 625
TasI AATT 6 cut(s) 88, 436, 644, 687, 805, 1026
TatI WGTACW 2 cut(s) 457, 1242
TauI GCSGC 2 cut(s) 174, 308
TfiI GAWTC 5 cut(s) 219, 781, 1406, 1421, 1505
Tru1I TTAA 6 cut(s) 77, 435, 810, 1002, 1029, 1094
Tru9I TTAA 6 cut(s) 77, 435, 810, 1002, 1029, 1094
TscAI CASTG 4 cut(s) 642, 907, 1206, 1303
TseFI GTSAC 1 cut(s) 1201
TseI GCWGC 3 cut(s) 61, 174, 251
Tsp45I GTSAC 1 cut(s) 1201
TspDTI ATGAA 3 cut(s) 144, 656, 1431
TspRI CASTG 4 cut(s) 642, 907, 1206, 1303
Tth111I GACNNNGTC 1 cut(s) 800
VspI ATTAAT 1 cut(s) 1029
XagI CCTNNNNNAGG 1 cut(s) 238
XapI RAATTY 1 cut(s) 644
XspI CTAG 4 cut(s) 572, 1061, 1130, 1397
Zsp2I ATGCAT 2 cut(s) 1195, 1384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.