Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011281

Physical Location & Seq

Genomic Coordinates Forward (+)

45963986 .. 45970682

Gene Structure 6697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G562600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1557 bp

ATGGATTTCACAATCCAAATGAGAGCAACAAGAACAAGAAGAAGAAACAACGGCATTTTCCTAACGCTCTCTCTGCTTCTCCTTTTATCACTCTTTGCGAATCCCACAAATGCCTCGATCCACATCTACGACAACCAGACCTTCAGAGAAGTCGGCAATGCTTACCTTCTCTCCGGCGGCAGCGAAGGGATCGCCGCTTCTCTCTCTACCGGCTCTTATATTCGATTTGAAAAAATCACCTTCTGGAGGAGCAAGGATGCTGCTGACAAGCATTCTGACATGGAGCATAGTACTGGGTTGATACAAGTTATAATTTTTGAGGCAGCTGATCGTAATAATATTGGTGGTTCTGCTTATGGAGGACAAAGAGCTATATGTTGCACCCCTGATCTTGCTAAGATGGAAGGTTGTAAGCAAGGTGAAGTCATCAGGAGACCTTCTGCAATAGATATTAACTGGCCTATTGTTTTAAATGTCCAGTTCCGTGGGAACTATCTATATGCAAATATGGACTATAAAGAGGTTTCCATCCCAAAAACTGGGATGTATAATTTATTTTTTGTAGCATGTGATCCAAAACTGAAGGGACTAGTTATGAGTGGGAAAACTTTGTGGAAAAATCCTGATGGTTATCTACCTGGTCGAATGGCTCCTCTGATGAAGTTTTATGTGTTTATGTCACTTGCTTACGTGGTTCTTGGTATAATTTGGTTCACTCAGTATGTGAGGTTTTGGAAGGATGTTCTGCAACTTCAGCATTGCATCACGCTTGTTATTGCTCTTGGATTGTTTGAGATGATTCTTTGGTATGTTGATTACGTAAATTTTAATAATACGGGGATGAGACCGATTGTTGTTACAACATTGGTTGTGACAGTTGGAGCTGTGAGAAAAACAGTTTCACGTCTTCTTATCCTCATTGTTTCAATGGGTTATGGTGTAGTGCGGCCCACTCTTGGGGGTCTTACCTCAAAGGTGCTTCTTCTTGGAACAACATTTTTTCTGGCAACAGAGTTGCTTAATATTACTGAGTATGTGGGAACAATTAATGATGTATCAGGAAGAGCCAGATTATTTCTAGTTCTTCCTGATGCTTTCTTGGACGCATTCTTGATATTGTGGATTTTTACCTCTCTCTCAAGAACACTGGAGCAGCTACAGGCAAAGAGAAGCTCTGTCAAGCTGGATATGTATAGGAAGTTCTCAAATGCATTAGCAGTGACAGTCATTGCCTCAGTCGCATGGATAGTTTATGAGGTGTACTTTAAAGCAACTGATCCATTCAATGAAAAGTGGCAGAGTGCTTGGATCATCACTGCTTTCTGGGATATTCTTGCATTTGCGTTGCTCTGTGTTATCTGTTATCTTTGGGCACCATCTCAGAGTTCTCAACGGTATGCTTACTCAGAGGAAGTGGGAGAAGAATCTGATGATGAAGAATCTCAATCTCTTACTAGAGGCAAGCCAGAGGGTGATATTGGCTTAGTCAAGCAAGAGAACGGTGGAAGCACCGAAGATCTTGATGAAGATGATTCAGAAGAAGACAAGAGGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0012505 GO:0016020 GO:0031090 GO:0031984 GO:0031985 GO:0032580 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lung_7-TM_R

Protein Analysis

519

Amino Acids

58.4

Weight (kDa)

5.81

Isoelectric Point (pI)

39.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011281)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01070 AT2G01070
fragaria_vesca	FvH4_5g30110 FvH4_5g30110
malus_domestica	MD08G1225000.v1.1 MD15G1418500.v1.1
prunus_persica	Prupe.1G562600_v2.0.a1
pyrus_communis	pycom08g19610 pycom08g19620 pycom15g37150
rosa_chinensis	RchiOBHm_Chr7g0224311 RchiOBHm_Chr7g0224371
rosa_laevigata	RLG00000001905
rosa_multiflora	Rmu_sc0025639.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234870
rosa_rugosa	Rorug07G0222600
rosa_samantha	Rh7AG380800 Rh7BG358500 Rh7DG367600
rosa_wichuraiana	Rw7G031110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	311
AccB1I	GGYRCC	1 cut(s)	1372
AccB7I	CCANNNNNTGG	1 cut(s)	539
AciI	CCGC	3 cut(s)	177, 195, 946
AclWI	GGATC	5 cut(s)	112, 197, 566, 1271, 1316
AcsI	RAATTY	1 cut(s)	823
AcuI	CTGAAG	3 cut(s)	127, 602, 737
AfaI	GTAC	2 cut(s)	292, 1262
AfiI	CCNNNNNNNGG	4 cut(s)	246, 539, 956, 957
AgsI	TTSAA	3 cut(s)	230, 927, 1285
AhlI	ACTAGT	1 cut(s)	589
AjiI	CACGTC	1 cut(s)	905
AjnI	CCWGG	1 cut(s)	637
AluBI	AGCT	6 cut(s)	326, 371, 884, 1156, 1173, 1183
AluI	AGCT	6 cut(s)	326, 371, 884, 1156, 1173, 1183
Alw26I	GTCTC	2 cut(s)	427, 838
AlwI	GGATC	5 cut(s)	112, 197, 566, 1271, 1316
AoxI	GGCC	2 cut(s)	458, 947
ApeKI	GCWGC	4 cut(s)	180, 260, 323, 1153
ApoI	RAATTY	1 cut(s)	823
AseI	ATTAAT	1 cut(s)	1047
AspS9I	GGNCC	1 cut(s)	948
AsuHPI	GGTGA	3 cut(s)	229, 431, 1484
BaeGI	GKGCMC	1 cut(s)	1375
BanI	GGYRCC	1 cut(s)	1372
BbsI	GAAGAC	2 cut(s)	899, 1548
BbvI	GCAGC	4 cut(s)	192, 247, 335, 1165
BccI	CCATC	4 cut(s)	394, 536, 620, 1384
BceAI	ACGGC	1 cut(s)	67
BciT130I	CCWGG	1 cut(s)	639
BcoDI	GTCTC	2 cut(s)	427, 838
BcuI	ACTAGT	1 cut(s)	589
BfaI	CTAG	3 cut(s)	590, 1079, 1455
BfmI	CTRYAG	1 cut(s)	1157
BglII	AGATCT	1 cut(s)	1516
BisI	GCNGC	7 cut(s)	178, 181, 195, 261, 324, 947, 1154
BlsI	GCNGC	7 cut(s)	179, 182, 196, 262, 325, 948, 1155
BmcAI	AGTACT	1 cut(s)	292
Bme1390I	CCNGG	1 cut(s)	639
BmgBI	CACGTC	1 cut(s)	905
BmgT120I	GGNCC	1 cut(s)	948
BmiI	GGNNCC	2 cut(s)	651, 1374
BmrFI	CCNGG	1 cut(s)	639
BmrI	ACTGGG	2 cut(s)	303, 549
BmsI	GCATC	3 cut(s)	247, 771, 1081
BmuI	ACTGGG	2 cut(s)	303, 549
BpiI	GAAGAC	2 cut(s)	899, 1548
BpmI	CTGGAG	2 cut(s)	265, 1169
BpuEI	CTTGAG	1 cut(s)	1123
BsaAI	YACGTR	2 cut(s)	691, 820
BsaBI	GATNNNNATC	2 cut(s)	122, 630
BsaI	GGTCTC	2 cut(s)	427, 838
BsaJI	CCNNGG	1 cut(s)	484
BsaXI	ACNNNNNCTCC	2 cut(s)	155, 185
Bsc4I	CCNNNNNNNGG	4 cut(s)	246, 539, 956, 957
Bse118I	RCCGGY	1 cut(s)	209
Bse1I	ACTGG	5 cut(s)	298, 461, 478, 544, 1152
Bse3DI	GCAATG	3 cut(s)	163, 757, 1227
Bse8I	GATNNNNATC	2 cut(s)	122, 630
BseBI	CCWGG	1 cut(s)	639
BseDI	CCNNGG	1 cut(s)	484
BseGI	GGATG	5 cut(s)	262, 528, 549, 745, 846
BseJI	GATNNNNATC	2 cut(s)	122, 630
BseLI	CCNNNNNNNGG	4 cut(s)	246, 539, 956, 957
BseMI	GCAATG	3 cut(s)	163, 757, 1227
BseMII	CTCAG	5 cut(s)	731, 1020, 1248, 1394, 1419
BseNI	ACTGG	5 cut(s)	298, 461, 478, 544, 1152
BseRI	GAGGAG	2 cut(s)	262, 642
BseSI	GKGCMC	1 cut(s)	1375
BseXI	GCAGC	4 cut(s)	192, 247, 335, 1165
BshFI	GGCC	2 cut(s)	460, 949
BshNI	GGYRCC	1 cut(s)	1372
BsiSI	CCGG	2 cut(s)	174, 210
BslFI	GGGAC	1 cut(s)	600
BslI	CCNNNNNNNGG	4 cut(s)	246, 539, 956, 957
BsmAI	GTCTC	2 cut(s)	427, 838
BsmFI	GGGAC	1 cut(s)	600
BsmI	GAATGC	2 cut(s)	271, 1106
BsnI	GGCC	2 cut(s)	460, 949
Bso31I	GGTCTC	2 cut(s)	427, 838
Bsp1286I	GDGCHC	1 cut(s)	1375
Bsp143I	GATC	8 cut(s)	117, 189, 328, 388, 571, 1276, 1308, 1516
BspACI	CCGC	3 cut(s)	177, 195, 946
BspANI	GGCC	2 cut(s)	460, 949
BspCNI	CTCAG	5 cut(s)	730, 1021, 1247, 1393, 1418
BspLI	GGNNCC	2 cut(s)	651, 1374
BspPI	GGATC	5 cut(s)	112, 197, 566, 1271, 1316
BspQI	GCTCTTC	1 cut(s)	1057
BspT107I	GGYRCC	1 cut(s)	1372
BspTNI	GGTCTC	2 cut(s)	427, 838
BsrDI	GCAATG	3 cut(s)	163, 757, 1227
BsrFI	RCCGGY	1 cut(s)	209
BsrI	ACTGG	5 cut(s)	298, 461, 478, 544, 1152
BssAI	RCCGGY	1 cut(s)	209
BssECI	CCNNGG	1 cut(s)	484
BssMI	GATC	8 cut(s)	117, 189, 328, 388, 571, 1276, 1308, 1516
Bst2UI	CCWGG	1 cut(s)	639
Bst4CI	ACNGT	5 cut(s)	877, 898, 1225, 1395, 1502
Bst6I	CTCTTC	1 cut(s)	1057
BstBAI	YACGTR	2 cut(s)	691, 820
BstC8I	GCNNGC	1 cut(s)	1463
BstDEI	CTNAG	7 cut(s)	396, 717, 1029, 1234, 1380, 1405, 1483
BstDSI	CCRYGG	1 cut(s)	484
BstENI	CCTNNNNNAGG	1 cut(s)	244
BstF5I	GGATG	5 cut(s)	262, 528, 549, 745, 846
BstKTI	GATC	8 cut(s)	120, 192, 331, 391, 574, 1279, 1311, 1519
BstMAI	GTCTC	2 cut(s)	427, 838
BstMBI	GATC	8 cut(s)	117, 189, 328, 388, 571, 1276, 1308, 1516
BstMWI	GCNNNNNNNGC	3 cut(s)	73, 754, 1238
BstNI	CCWGG	1 cut(s)	639
BstNSI	RCATGY	1 cut(s)	570
BstSCI	CCNGG	1 cut(s)	637
BstSFI	CTRYAG	1 cut(s)	1157
BstSLI	GKGCMC	1 cut(s)	1375
BstSNI	TACGTA	1 cut(s)	820
BstV1I	GCAGC	4 cut(s)	192, 247, 335, 1165
BstV2I	GAAGAC	2 cut(s)	899, 1548
BstX2I	RGATCY	1 cut(s)	1516
BstXI	CCANNNNNNTGG	1 cut(s)	485
BstYI	RGATCY	1 cut(s)	1516
BsuRI	GGCC	2 cut(s)	460, 949
BtgI	CCRYGG	1 cut(s)	484
BtrI	CACGTC	1 cut(s)	905
BtsCI	GGATG	5 cut(s)	262, 528, 549, 745, 846
BtsI	GCAGTG	2 cut(s)	1224, 1314
BtsIMutI	CAGTG	3 cut(s)	1145, 1224, 1314
Cac8I	GCNNGC	1 cut(s)	1463
Cfr10I	RCCGGY	1 cut(s)	209
Cfr13I	GGNCC	1 cut(s)	948
CseI	GACGC	1 cut(s)	1112
CsiI	ACCWGGT	1 cut(s)	637
Csp6I	GTAC	2 cut(s)	291, 1261
CviAII	CATG	3 cut(s)	280, 567, 1242
CviQI	GTAC	2 cut(s)	291, 1261
DdeI	CTNAG	7 cut(s)	396, 717, 1029, 1234, 1380, 1405, 1483
DpnI	GATC	8 cut(s)	119, 191, 330, 390, 573, 1278, 1310, 1518
DpnII	GATC	8 cut(s)	117, 189, 328, 388, 571, 1276, 1308, 1516
DraI	TTTAAA	2 cut(s)	471, 1267
Eam1104I	CTCTTC	1 cut(s)	1057
EarI	CTCTTC	1 cut(s)	1057
Eco105I	TACGTA	1 cut(s)	820
Eco31I	GGTCTC	2 cut(s)	427, 838
Eco57I	CTGAAG	3 cut(s)	127, 602, 737
EcoNI	CCTNNNNNAGG	1 cut(s)	244
EcoRII	CCWGG	1 cut(s)	637
EcoT22I	ATGCAT	1 cut(s)	1213
FaeI	CATG	3 cut(s)	283, 570, 1245
FaqI	GGGAC	1 cut(s)	600
FatI	CATG	3 cut(s)	279, 566, 1241
Fnu4HI	GCNGC	7 cut(s)	178, 181, 195, 261, 324, 947, 1154
FokI	GGATG	5 cut(s)	269, 515, 556, 752, 853
Fsp4HI	GCNGC	7 cut(s)	178, 181, 195, 261, 324, 947, 1154
FspBI	CTAG	3 cut(s)	590, 1079, 1455
GluI	GCNGC	7 cut(s)	178, 181, 195, 261, 324, 947, 1154
GsuI	CTGGAG	2 cut(s)	265, 1169
HaeIII	GGCC	2 cut(s)	460, 949
HapII	CCGG	2 cut(s)	174, 210
HgaI	GACGC	1 cut(s)	1112
Hin1II	CATG	3 cut(s)	283, 570, 1245
HinfI	GANTC	5 cut(s)	100, 799, 1424, 1439, 1532
HpaII	CCGG	2 cut(s)	174, 210
HphI	GGTGA	3 cut(s)	229, 431, 1484
Hpy166II	GTNNAC	2 cut(s)	714, 1261
Hpy188I	TCNGA	7 cut(s)	146, 277, 657, 1383, 1408, 1429, 1537
Hpy188III	TCNNGA	8 cut(s)	244, 430, 623, 1059, 1088, 1111, 1140, 1520
Hpy8I	GTNNAC	2 cut(s)	714, 1261
HpyAV	CCTTC	8 cut(s)	151, 176, 179, 250, 398, 447, 577, 730
HpyCH4III	ACNGT	5 cut(s)	877, 898, 1225, 1395, 1502
HpyCH4IV	ACGT	3 cut(s)	690, 819, 904
HpyCH4V	TGCA	7 cut(s)	381, 443, 503, 748, 762, 1211, 1337
HpyF10VI	GCNNNNNNNGC	3 cut(s)	73, 754, 1238
HpyF3I	CTNAG	7 cut(s)	396, 717, 1029, 1234, 1380, 1405, 1483
HpySE526I	ACGT	3 cut(s)	690, 819, 904
Hsp92II	CATG	3 cut(s)	283, 570, 1245
Kzo9I	GATC	8 cut(s)	117, 189, 328, 388, 571, 1276, 1308, 1516
LguI	GCTCTTC	1 cut(s)	1057
LmnI	GCTCC	5 cut(s)	249, 283, 655, 881, 1150
Lsp1109I	GCAGC	4 cut(s)	192, 247, 335, 1165
LweI	GCATC	3 cut(s)	247, 771, 1081
MabI	ACCWGGT	1 cut(s)	637
MaeI	CTAG	3 cut(s)	590, 1079, 1455
MaeII	ACGT	3 cut(s)	690, 819, 904
MaeIII	GTNAC	4 cut(s)	678, 856, 871, 1219
MalI	GATC	8 cut(s)	119, 191, 330, 390, 573, 1278, 1310, 1518
MboI	GATC	8 cut(s)	117, 189, 328, 388, 571, 1276, 1308, 1516
MflI	RGATCY	1 cut(s)	1516
MhlI	GDGCHC	1 cut(s)	1375
MluCI	AATT	5 cut(s)	312, 550, 705, 823, 1044
MmeI	TCCRAC	1 cut(s)	859
Mph1103I	ATGCAT	1 cut(s)	1213
MseI	TTAA	6 cut(s)	453, 470, 828, 1020, 1047, 1266
MspA1I	CMGCKG	1 cut(s)	326
MspI	CCGG	2 cut(s)	174, 210
MspR9I	CCNGG	1 cut(s)	639
Mva1269I	GAATGC	2 cut(s)	271, 1106
MvaI	CCWGG	1 cut(s)	639
MwoI	GCNNNNNNNGC	3 cut(s)	73, 754, 1238
NdeII	GATC	8 cut(s)	117, 189, 328, 388, 571, 1276, 1308, 1516
NlaIII	CATG	3 cut(s)	283, 570, 1245
NlaIV	GGNNCC	2 cut(s)	651, 1374
NmuCI	GTSAC	3 cut(s)	678, 871, 1219
NsiI	ATGCAT	1 cut(s)	1213
NspI	RCATGY	1 cut(s)	570
PciSI	GCTCTTC	1 cut(s)	1057
PctI	GAATGC	2 cut(s)	271, 1106
PfeI	GAWTC	5 cut(s)	100, 799, 1424, 1439, 1532
PflMI	CCANNNNNTGG	1 cut(s)	539
PkrI	GCNGC	7 cut(s)	179, 182, 196, 262, 325, 948, 1155
Ppu21I	YACGTR	2 cut(s)	691, 820
PshBI	ATTAAT	1 cut(s)	1047
PsiI	TTATAA	1 cut(s)	311
Psp6I	CCWGG	1 cut(s)	637
PspGI	CCWGG	1 cut(s)	637
PspN4I	GGNNCC	2 cut(s)	651, 1374
PspPI	GGNCC	1 cut(s)	948
PsrI	GAACNNNNNNTAC	2 cut(s)	1184, 1216
PsuI	RGATCY	1 cut(s)	1516
PvuII	CAGCTG	1 cut(s)	326
RsaI	GTAC	2 cut(s)	292, 1262
RsaNI	GTAC	2 cut(s)	291, 1261
SapI	GCTCTTC	1 cut(s)	1057
SaqAI	TTAA	6 cut(s)	453, 470, 828, 1020, 1047, 1266
SatI	GCNGC	7 cut(s)	178, 181, 195, 261, 324, 947, 1154
Sau3AI	GATC	8 cut(s)	117, 189, 328, 388, 571, 1276, 1308, 1516
Sau96I	GGNCC	1 cut(s)	948
ScaI	AGTACT	1 cut(s)	292
ScrFI	CCNGG	1 cut(s)	639
SduI	GDGCHC	1 cut(s)	1375
SexAI	ACCWGGT	1 cut(s)	637
SfaNI	GCATC	3 cut(s)	247, 771, 1081
SfcI	CTRYAG	1 cut(s)	1157
SmlI	CTYRAG	1 cut(s)	1138
SmoI	CTYRAG	1 cut(s)	1138
SnaBI	TACGTA	1 cut(s)	820
SpeI	ACTAGT	1 cut(s)	589
Sse9I	AATT	5 cut(s)	312, 550, 705, 823, 1044
SsiI	CCGC	3 cut(s)	177, 195, 946
SspI	AATATT	2 cut(s)	340, 1024
SspMI	CTAG	3 cut(s)	590, 1079, 1455
StyD4I	CCNGG	1 cut(s)	637
TaaI	ACNGT	5 cut(s)	877, 898, 1225, 1395, 1502
TaiI	ACGT	3 cut(s)	693, 822, 907
TaqI	TCGA	3 cut(s)	116, 223, 643
TaqII	GACCGA	1 cut(s)	862
TasI	AATT	5 cut(s)	312, 550, 705, 823, 1044
TatI	WGTACW	2 cut(s)	290, 1260
TauI	GCSGC	3 cut(s)	180, 197, 949
TfiI	GAWTC	5 cut(s)	100, 799, 1424, 1439, 1532
Tru1I	TTAA	6 cut(s)	453, 470, 828, 1020, 1047, 1266
Tru9I	TTAA	6 cut(s)	453, 470, 828, 1020, 1047, 1266
TscAI	CASTG	3 cut(s)	1152, 1224, 1321
TseFI	GTSAC	3 cut(s)	678, 871, 1219
TseI	GCWGC	4 cut(s)	180, 260, 323, 1153
Tsp45I	GTSAC	3 cut(s)	678, 871, 1219
TspDTI	ATGAA	4 cut(s)	674, 1302, 1449, 1539
TspGWI	ACGGA	1 cut(s)	473
TspRI	CASTG	3 cut(s)	1152, 1224, 1321
Van91I	CCANNNNNTGG	1 cut(s)	539
VspI	ATTAAT	1 cut(s)	1047
XagI	CCTNNNNNAGG	1 cut(s)	244
XapI	RAATTY	1 cut(s)	823
XceI	RCATGY	1 cut(s)	570
XspI	CTAG	3 cut(s)	590, 1079, 1455
ZrmI	AGTACT	1 cut(s)	292
Zsp2I	ATGCAT	1 cut(s)	1213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.