Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011281

Physical Location & Seq

Genomic Coordinates Forward (+)

46348651 .. 46352608

Gene Structure 3958 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20085

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

ATGGGAATTATTACTGGGAATTATTTCACTTTTAATTGCACCTATCTCACTCCCAGTGGTTCGATTACGATATTCGAGAATATCACCTTCTGGAGGAGCGAGGCTGCTGTTGACAAGAAGCATAGTAATGGGTTGATACAGGTTATCATTTTTGAAGCCGCGGATCGTAATAATATCGGTGGTTCTGCTTATGGGGGACAGAGATCTATATGTTGCACCCCTGATCTTGCTAAGATGGAAGGTTGTAAGCAAGGTGAAGTCATTAGGAGACCTTGTGCCACAGATGTTAATTGGCCCATTGTTATAAATGTACACTTCAGAAGGAACAGTCTCTCTAAAAGTATGGATTATAAAGAGATTTTGATCACGAAAACGGGGATGTATAACTTGTTTTTTGTAGCCTGTGATCCAAAGCTGAAGGAAATAGTAATGAGCGGGAAGACGGTATGGAAAAGCCCCGATGGTTATCTACCTGGTCGTATGGCTCCACTGATGAAATTTTACGTGTATATGGCACTTGCTTATGTGCTGATTGGTGTAATTTGGCTCACTCAGTATGTGAGGTTCTGGAAGGATATTCTGCAACTTCAGCATTGCATCACGGCTGTCATTGCTCTTGGATTGTTTGAGATGATTCTTTGGTATTCCGACTATGTCAATTTTAATAATACAGGGATGAGGCAAGTTTTTCTTACGACATTAGTTGTAACAGTTGGAGCTGTGAGAAAAACAGTTTCCCGTCTCCTTATCCTCACTGTTTCTATGGGCTATGGTGTAGTACGGCCTACTCTTGGGGATCTTACCTCCAAGGTGCTTCTGCTTGGAATAACATTTTTTCTGGCAACAGGGTTGCTTAACATTACCGAGTTTGTTGGGACAATTAATGATACAAAGAGAAGCTCTGTCAAGTTGGAAATGTATAGGAAGTTCTCAAATGCATTAGCAGTGACAGTCATTGCCTCAGTTGCATGGATAGCTTATGAGGTATGGTTTGGAAGGGGGGAAGCAGTCAGTTACTATTTCCTACATTACTGTACGTTTGCTGACATTAGAATTCTCATAAAAAGGTTTATGGGACGGTATATTTGCTCACTACTGTTCCTTCATTGTAGATACTGTAAACCTCTGGTCAAGTGGCATAGTGCTTGGATCATCACTGCTTTCTGGGATATTCTTGCATTTGCATTGCTGAGCGTTATCTGCTATCTTTGTGCACCATCTCAGAACTCTCAGAGGTATGCATACTCAGAGAAGCTAGGAGAAGAATCTGATGATGAAGAATCTCAGTCTCTAACTGCGGGCAAGCCAGAGGGTGATATCAGCTTAGTCAATCAAGAAGAGAAGAGTGGTGGAAGCACCGGAGATTCTGATGAAGAGGACACAGAAGAAGATAAGAGGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0012505 GO:0016020 GO:0031090 GO:0031984 GO:0031985 GO:0032580 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lung_7-TM_R

Protein Analysis

467

Amino Acids

52.82

Weight (kDa)

7.86

Isoelectric Point (pI)

42.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GOST_TM	PF06814	163 - 297	9.7e-42	GOST, seven transmembrane domain
GOST_TM	PF06814	297 - 334	3.8e-07	GOST, seven transmembrane domain
GOST_TM	PF06814	376 - 411	1.6e-07	GOST, seven transmembrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011281)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01070 AT2G01070
fragaria_vesca	FvH4_5g30110 FvH4_5g30110
malus_domestica	MD08G1225000.v1.1 MD15G1418500.v1.1
prunus_persica	Prupe.1G562600_v2.0.a1
pyrus_communis	pycom08g19610 pycom08g19620 pycom15g37150
rosa_chinensis	RchiOBHm_Chr7g0224311 RchiOBHm_Chr7g0224371
rosa_laevigata	RLG00000001905
rosa_multiflora	Rmu_sc0025639.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234870
rosa_rugosa	Rorug07G0222600
rosa_samantha	Rh7AG380800 Rh7BG358500 Rh7DG367600
rosa_wichuraiana	Rw7G031110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	305, 351
AccBSI	CCGCTC	1 cut(s)	435
AccII	CGCG	1 cut(s)	161
AciI	CCGC	4 cut(s)	159, 161, 435, 1298
AclWI	GGATC	4 cut(s)	171, 401, 804, 1157
AcsI	RAATTY	2 cut(s)	497, 1053
AcuI	CTGAAG	3 cut(s)	301, 437, 572
AfaI	GTAC	3 cut(s)	312, 780, 1036
AfiI	CCNNNNNNNGG	2 cut(s)	93, 791
AflIII	ACRYGT	1 cut(s)	504
AgsI	TTSAA	1 cut(s)	155
AjnI	CCWGG	1 cut(s)	472
AluBI	AGCT	6 cut(s)	415, 719, 900, 977, 1255, 1323
AluI	AGCT	6 cut(s)	415, 719, 900, 977, 1255, 1323
Alw21I	GWGCWC	1 cut(s)	1216
Alw26I	GTCTC	4 cut(s)	262, 335, 746, 1293
Alw44I	GTGCAC	1 cut(s)	1212
AlwI	GGATC	4 cut(s)	171, 401, 804, 1157
AoxI	GGCC	2 cut(s)	293, 782
ApaLI	GTGCAC	1 cut(s)	1212
ApeKI	GCWGC	1 cut(s)	104
ApoI	RAATTY	2 cut(s)	497, 1053
ArsI	GACNNNNNNTTYG	2 cut(s)	1068, 1100
AseI	ATTAAT	1 cut(s)	882
Asp700I	GAANNNNTTC	1 cut(s)	23
AspS9I	GGNCC	1 cut(s)	294
AsuHPI	GGTGA	3 cut(s)	76, 266, 1325
BaeGI	GKGCMC	1 cut(s)	1216
BbsI	GAAGAC	1 cut(s)	446
Bbv12I	GWGCWC	1 cut(s)	1216
BbvI	GCAGC	1 cut(s)	91
BccI	CCATC	3 cut(s)	229, 455, 1225
BceAI	ACGGC	2 cut(s)	618, 797
BciT130I	CCWGG	1 cut(s)	474
BclI	TGATCA	1 cut(s)	363
BcoDI	GTCTC	4 cut(s)	262, 335, 746, 1293
BfaI	CTAG	1 cut(s)	1256
BglII	AGATCT	1 cut(s)	203
BisI	GCNGC	2 cut(s)	105, 159
BlpI	GCTNAGC	1 cut(s)	1190
BlsI	GCNGC	2 cut(s)	106, 160
Bme1390I	CCNGG	1 cut(s)	474
BmgT120I	GGNCC	1 cut(s)	294
BmiI	GGNNCC	1 cut(s)	486
BmrFI	CCNGG	1 cut(s)	474
BmrI	ACTGGG	2 cut(s)	24, 48
BmsI	GCATC	1 cut(s)	606
BmuI	ACTGGG	2 cut(s)	24, 48
BpiI	GAAGAC	1 cut(s)	446
BpmI	CTGGAG	1 cut(s)	112
Bpu1102I	GCTNAGC	1 cut(s)	1190
BsaAI	YACGTR	1 cut(s)	505
BsaBI	GATNNNNATC	2 cut(s)	362, 465
BsaI	GGTCTC	1 cut(s)	262
BsaJI	CCNNGG	2 cut(s)	159, 807
BsaWI	WCCGGW	1 cut(s)	1358
BsaXI	ACNNNNNCTCC	2 cut(s)	259, 289
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 791
Bse1I	ACTGG	2 cut(s)	19, 54
Bse3DI	GCAATG	4 cut(s)	592, 609, 954, 1184
Bse8I	GATNNNNATC	2 cut(s)	362, 465
BseBI	CCWGG	1 cut(s)	474
BseDI	CCNNGG	2 cut(s)	159, 807
BseGI	GGATG	2 cut(s)	384, 681
BseJI	GATNNNNATC	2 cut(s)	362, 465
BseLI	CCNNNNNNNGG	2 cut(s)	93, 791
BseMI	GCAATG	4 cut(s)	592, 609, 954, 1184
BseMII	CTCAG	7 cut(s)	566, 975, 1181, 1235, 1244, 1260, 1298
BseNI	ACTGG	2 cut(s)	19, 54
BseRI	GAGGAG	1 cut(s)	109
BseSI	GKGCMC	1 cut(s)	1216
BseXI	GCAGC	1 cut(s)	91
Bsh1236I	CGCG	1 cut(s)	161
BshFI	GGCC	2 cut(s)	295, 784
BsiHKAI	GWGCWC	1 cut(s)	1216
BsiSI	CCGG	1 cut(s)	1359
BslFI	GGGAC	3 cut(s)	210, 889, 1089
BslI	CCNNNNNNNGG	2 cut(s)	93, 791
BsmAI	GTCTC	4 cut(s)	262, 335, 746, 1293
BsmBI	CGTCTC	1 cut(s)	746
BsmFI	GGGAC	3 cut(s)	210, 889, 1089
BsnI	GGCC	2 cut(s)	295, 784
Bso31I	GGTCTC	1 cut(s)	262
Bsp1286I	GDGCHC	1 cut(s)	1216
Bsp1407I	TGTACA	1 cut(s)	310
Bsp143I	GATC	7 cut(s)	163, 203, 223, 363, 406, 796, 1149
Bsp1720I	GCTNAGC	1 cut(s)	1190
BspACI	CCGC	4 cut(s)	159, 161, 435, 1298
BspANI	GGCC	2 cut(s)	295, 784
BspCNI	CTCAG	7 cut(s)	565, 974, 1182, 1234, 1243, 1259, 1297
BspFNI	CGCG	1 cut(s)	161
BspLI	GGNNCC	1 cut(s)	486
BspPI	GGATC	4 cut(s)	171, 401, 804, 1157
BspTNI	GGTCTC	1 cut(s)	262
BsrBI	CCGCTC	1 cut(s)	435
BsrDI	GCAATG	4 cut(s)	592, 609, 954, 1184
BsrGI	TGTACA	1 cut(s)	310
BsrI	ACTGG	2 cut(s)	19, 54
BssECI	CCNNGG	2 cut(s)	159, 807
BssMI	GATC	7 cut(s)	163, 203, 223, 363, 406, 796, 1149
BssT1I	CCWWGG	1 cut(s)	807
Bst2UI	CCWGG	1 cut(s)	474
Bst6I	CTCTTC	3 cut(s)	1332, 1337, 1368
BstAUI	TGTACA	1 cut(s)	310
BstBAI	YACGTR	1 cut(s)	505
BstC8I	GCNNGC	2 cut(s)	1300, 1304
BstDEI	CTNAG	9 cut(s)	231, 552, 961, 1190, 1221, 1230, 1246, 1284, 1324
BstDSI	CCRYGG	1 cut(s)	159
BstENI	CCTNNNNNAGG	1 cut(s)	91
BstF5I	GGATG	2 cut(s)	384, 681
BstFNI	CGCG	1 cut(s)	161
BstKTI	GATC	7 cut(s)	166, 206, 226, 366, 409, 799, 1152
BstMAI	GTCTC	4 cut(s)	262, 335, 746, 1293
BstMBI	GATC	7 cut(s)	163, 203, 223, 363, 406, 796, 1149
BstMWI	GCNNNNNNNGC	5 cut(s)	589, 611, 965, 974, 1200
BstNI	CCWGG	1 cut(s)	474
BstSCI	CCNGG	1 cut(s)	472
BstSLI	GKGCMC	1 cut(s)	1216
BstUI	CGCG	1 cut(s)	161
BstV1I	GCAGC	1 cut(s)	91
BstV2I	GAAGAC	1 cut(s)	446
BstX2I	RGATCY	2 cut(s)	203, 796
BstYI	RGATCY	2 cut(s)	203, 796
BsuRI	GGCC	2 cut(s)	295, 784
BtgI	CCRYGG	1 cut(s)	159
BtsCI	GGATG	2 cut(s)	384, 681
BtsI	GCAGTG	2 cut(s)	951, 1155
BtsIMutI	CAGTG	5 cut(s)	61, 488, 753, 951, 1155
Cac8I	GCNNGC	2 cut(s)	1300, 1304
Cfr13I	GGNCC	1 cut(s)	294
Cfr42I	CCGCGG	1 cut(s)	162
CsiI	ACCWGGT	1 cut(s)	472
Csp6I	GTAC	3 cut(s)	311, 779, 1035
CviAII	CATG	1 cut(s)	969
CviQI	GTAC	3 cut(s)	311, 779, 1035
DdeI	CTNAG	9 cut(s)	231, 552, 961, 1190, 1221, 1230, 1246, 1284, 1324
DpnI	GATC	7 cut(s)	165, 205, 225, 365, 408, 798, 1151
DpnII	GATC	7 cut(s)	163, 203, 223, 363, 406, 796, 1149
Eam1104I	CTCTTC	3 cut(s)	1332, 1337, 1368
EarI	CTCTTC	3 cut(s)	1332, 1337, 1368
Eco130I	CCWWGG	1 cut(s)	807
Eco31I	GGTCTC	1 cut(s)	262
Eco32I	GATATC	1 cut(s)	1318
Eco57I	CTGAAG	3 cut(s)	301, 437, 572
EcoNI	CCTNNNNNAGG	1 cut(s)	91
EcoRI	GAATTC	1 cut(s)	1053
EcoRII	CCWGG	1 cut(s)	472
EcoRV	GATATC	1 cut(s)	1318
EcoT14I	CCWWGG	1 cut(s)	807
EcoT22I	ATGCAT	2 cut(s)	940, 1243
ErhI	CCWWGG	1 cut(s)	807
Esp3I	CGTCTC	1 cut(s)	746
FaeI	CATG	1 cut(s)	972
FalI	AAGNNNNNCTT	2 cut(s)	675, 707
FaqI	GGGAC	3 cut(s)	210, 889, 1089
FatI	CATG	1 cut(s)	968
FauI	CCCGC	2 cut(s)	428, 1291
FbaI	TGATCA	1 cut(s)	363
Fnu4HI	GCNGC	2 cut(s)	105, 159
FokI	GGATG	2 cut(s)	391, 688
Fsp4HI	GCNGC	2 cut(s)	105, 159
FspBI	CTAG	1 cut(s)	1256
GluI	GCNGC	2 cut(s)	105, 159
GsuI	CTGGAG	1 cut(s)	112
HaeIII	GGCC	2 cut(s)	295, 784
HapII	CCGG	1 cut(s)	1359
Hin1II	CATG	1 cut(s)	972
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HinfI	GANTC	4 cut(s)	634, 1265, 1280, 1364
HpaII	CCGG	1 cut(s)	1359
HphI	GGTGA	3 cut(s)	76, 266, 1325
Hpy166II	GTNNAC	4 cut(s)	112, 313, 1121, 1214
Hpy188I	TCNGA	7 cut(s)	320, 649, 1224, 1233, 1249, 1270, 1369
Hpy188III	TCNNGA	5 cut(s)	76, 91, 367, 568, 1334
Hpy8I	GTNNAC	4 cut(s)	112, 313, 1121, 1214
HpyAV	CCTTC	7 cut(s)	97, 233, 315, 412, 565, 990, 1112
HpyCH4IV	ACGT	2 cut(s)	504, 1037
HpyF10VI	GCNNNNNNNGC	5 cut(s)	589, 611, 965, 974, 1200
HpyF3I	CTNAG	9 cut(s)	231, 552, 961, 1190, 1221, 1230, 1246, 1284, 1324
HpySE526I	ACGT	2 cut(s)	504, 1037
Hsp92II	CATG	1 cut(s)	972
Ksp22I	TGATCA	1 cut(s)	363
KspI	CCGCGG	1 cut(s)	162
Kzo9I	GATC	7 cut(s)	163, 203, 223, 363, 406, 796, 1149
LmnI	GCTCC	3 cut(s)	96, 490, 716
Lsp1109I	GCAGC	1 cut(s)	91
LweI	GCATC	1 cut(s)	606
MabI	ACCWGGT	1 cut(s)	472
MaeI	CTAG	1 cut(s)	1256
MaeII	ACGT	2 cut(s)	504, 1037
MaeIII	GTNAC	3 cut(s)	706, 946, 1013
MalI	GATC	7 cut(s)	165, 205, 225, 365, 408, 798, 1151
MbiI	CCGCTC	1 cut(s)	435
MboI	GATC	7 cut(s)	163, 203, 223, 363, 406, 796, 1149
MboII	GAAGA	8 cut(s)	451, 1274, 1289, 1349, 1354, 1385, 1397, 1400
MflI	RGATCY	2 cut(s)	203, 796
MhlI	GDGCHC	1 cut(s)	1216
MluCI	AATT	9 cut(s)	6, 19, 34, 289, 497, 540, 658, 879, 1053
MmeI	TCCRAC	3 cut(s)	672, 694, 891
Mph1103I	ATGCAT	2 cut(s)	940, 1243
MroXI	GAANNNNTTC	1 cut(s)	23
MseI	TTAA	5 cut(s)	33, 288, 663, 855, 882
MslI	CAYNNNNRTG	1 cut(s)	126
MspA1I	CMGCKG	1 cut(s)	161
MspI	CCGG	1 cut(s)	1359
MspR9I	CCNGG	1 cut(s)	474
MvaI	CCWGG	1 cut(s)	474
MvnI	CGCG	1 cut(s)	161
MwoI	GCNNNNNNNGC	5 cut(s)	589, 611, 965, 974, 1200
NdeII	GATC	7 cut(s)	163, 203, 223, 363, 406, 796, 1149
NlaIII	CATG	1 cut(s)	972
NlaIV	GGNNCC	1 cut(s)	486
NmuCI	GTSAC	1 cut(s)	946
NsiI	ATGCAT	2 cut(s)	940, 1243
PdmI	GAANNNNTTC	1 cut(s)	23
PfeI	GAWTC	4 cut(s)	634, 1265, 1280, 1364
PflFI	GACNNNGTC	1 cut(s)	653
PkrI	GCNGC	2 cut(s)	106, 160
Ppu21I	YACGTR	1 cut(s)	505
PshBI	ATTAAT	1 cut(s)	882
PsiI	TTATAA	2 cut(s)	305, 351
Psp6I	CCWGG	1 cut(s)	472
PspGI	CCWGG	1 cut(s)	472
PspN4I	GGNNCC	1 cut(s)	486
PspPI	GGNCC	1 cut(s)	294
PsrI	GAACNNNNNNTAC	4 cut(s)	548, 580, 911, 943
PsuI	RGATCY	2 cut(s)	203, 796
PsyI	GACNNNGTC	1 cut(s)	653
RsaI	GTAC	3 cut(s)	312, 780, 1036
RsaNI	GTAC	3 cut(s)	311, 779, 1035
RseI	CAYNNNNRTG	1 cut(s)	126
SacII	CCGCGG	1 cut(s)	162
SaqAI	TTAA	5 cut(s)	33, 288, 663, 855, 882
SatI	GCNGC	2 cut(s)	105, 159
Sau3AI	GATC	7 cut(s)	163, 203, 223, 363, 406, 796, 1149
Sau96I	GGNCC	1 cut(s)	294
ScrFI	CCNGG	1 cut(s)	474
SduI	GDGCHC	1 cut(s)	1216
SexAI	ACCWGGT	1 cut(s)	472
SfaNI	GCATC	1 cut(s)	606
Sfr303I	CCGCGG	1 cut(s)	162
SgrBI	CCGCGG	1 cut(s)	162
SmiMI	CAYNNNNRTG	1 cut(s)	126
Sse9I	AATT	9 cut(s)	6, 19, 34, 289, 497, 540, 658, 879, 1053
SsiI	CCGC	4 cut(s)	159, 161, 435, 1298
SspMI	CTAG	1 cut(s)	1256
StyD4I	CCNGG	1 cut(s)	472
StyI	CCWWGG	1 cut(s)	807
TaiI	ACGT	2 cut(s)	507, 1040
TaqI	TCGA	2 cut(s)	62, 75
TasI	AATT	9 cut(s)	6, 19, 34, 289, 497, 540, 658, 879, 1053
TatI	WGTACW	1 cut(s)	310
TauI	GCSGC	1 cut(s)	161
TfiI	GAWTC	4 cut(s)	634, 1265, 1280, 1364
Tru1I	TTAA	5 cut(s)	33, 288, 663, 855, 882
Tru9I	TTAA	5 cut(s)	33, 288, 663, 855, 882
TscAI	CASTG	5 cut(s)	61, 495, 760, 951, 1162
TseFI	GTSAC	1 cut(s)	946
TseI	GCWGC	1 cut(s)	104
Tsp45I	GTSAC	1 cut(s)	946
TspDTI	ATGAA	4 cut(s)	509, 1094, 1290, 1386
TspRI	CASTG	5 cut(s)	61, 495, 760, 951, 1162
Tth111I	GACNNNGTC	1 cut(s)	653
VneI	GTGCAC	1 cut(s)	1212
VspI	ATTAAT	1 cut(s)	882
XagI	CCTNNNNNAGG	1 cut(s)	91
XapI	RAATTY	2 cut(s)	497, 1053
XmnI	GAANNNNTTC	1 cut(s)	23
XspI	CTAG	1 cut(s)	1256
Zsp2I	ATGCAT	2 cut(s)	940, 1243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.