Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004024

Physical Location & Seq

Genomic Coordinates Forward (+)

81436 .. 83290

Gene Structure 1855 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G01100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGACTGCAAGAAGTTCATCCAGATGGTCGAGGAGAAGAAACGAAGAGTTCTTGAGAAGCAAGAAGCTCCTTTGAAATGGGAGCAGAAGCTAGAGGCGGCTGCGAATGCCAAAGCAGACACAGAAACTAAAGTGAAGAGATCAAAGGGCCCTAAGAGAAAACAAAGGGCTGCGTCTGAATCTAGCTCAGAAAGTGATAGTAGCTCTGAGGTGAGAAGAAAGTCTAGAAGATCTCACAATAAGCACCGAAGACATGCACACTCTGATTCAGATGACAGTGATAGGAGGAAAGAGAAGAAATCCAGGAGGCAGAAAAGAAGGTCCTTGAGTCCAAGCGATGATAGCACTGGTGATTATGAAAGTGGGTCAGAGGATGAGCTGAGGATGAAGATAAAGCACCATCGGAGGCACAAGTGGCATAGCTCAAGAAAGACTTGCGATGATGACAGTACCGAAGATGTGAGAAGAAAACATTTAAAGCATCACAGGCGCAGTGAGGTGGTCACTTCAAGTGATAGTGAGGAAGAGAGTGGAAGAAGAAGGCGAGGCAAATATCACAGGCACAACAGAGGTTCAGCCTCCTCGAGTGGCTCGGAAGAAGATAGTGGGAAAAGTATGAAGAGAAGGCAACATAAAAGGCATCGTTTGGCTGAGTCTTCAAGTGAGGAAGATGGGGCAATGAGAAGGACTAGGCATCATAAACATGGCAGAGATTCAGCATCTGAGTCTGATGGAAGAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

247

Amino Acids

29.0

Weight (kDa)

10.35

Isoelectric Point (pI)

114.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01100 AT2G01100 AT2G01100
fragaria_vesca	FvH4_4g26261 FvH4_4g26261 FvH4_4g26261 FvH4_4g26263
malus_domestica	MD13G1031200.v1.1 MD16G1033400.v1.1
prunus_persica	Prupe.1G320900_v2.0.a1 Prupe.1G320900_v2.0.a1 Prupe.1G320900_v2.0.a1
pyrus_communis	pycom13g02730 pycom16g02800
rosa_chinensis	RchiOBHm_Chr2g0167881 RchiOBHm_Chr2g0167891 RchiOBHm_Chr4g0433871
rosa_laevigata	RLG00000006721 RLG00000011334 RLG00000017078
rosa_multiflora	Rmu_sc0000352.1_g000002
rosa_roxburghii	Rroxscaffold_5G00375270
rosa_rugosa	Rorug04G0272000 Rorug04G0272000 Rorug04G0272000
rosa_samantha	Rh2BG014400 Rh4AG326700 Rh4DG330900 Rh5DG507000 Rh6AG509600 Rh7BG051000 Rh7CG171900
rosa_wichuraiana	Rw4G028320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	98
AfaI	GTAC	1 cut(s)	451
AgsI	TTSAA	3 cut(s)	76, 510, 660
AjnI	CCWGG	1 cut(s)	302
AluBI	AGCT	6 cut(s)	68, 91, 186, 204, 379, 423
AluI	AGCT	6 cut(s)	68, 91, 186, 204, 379, 423
AlwNI	CAGNNNCTG	1 cut(s)	722
Ama87I	CYCGRG	1 cut(s)	583
AoxI	GGCC	1 cut(s)	148
ApaI	GGGCCC	1 cut(s)	152
ApeKI	GCWGC	2 cut(s)	101, 170
AspLEI	GCGC	1 cut(s)	492
AspS9I	GGNCC	3 cut(s)	148, 149, 321
AsuHPI	GGTGA	2 cut(s)	223, 362
AvaI	CYCGRG	1 cut(s)	583
AvaII	GGWCC	1 cut(s)	321
BaeGI	GKGCMC	1 cut(s)	152
BanII	GRGCYC	1 cut(s)	152
BbsI	GAAGAC	2 cut(s)	256, 648
BbvCI	CCTCAGC	1 cut(s)	380
BbvI	GCAGC	2 cut(s)	88, 157
BccI	CCATC	4 cut(s)	19, 408, 665, 725
BciT130I	CCWGG	1 cut(s)	304
BfaI	CTAG	4 cut(s)	92, 183, 225, 690
BglII	AGATCT	1 cut(s)	230
BisI	GCNGC	3 cut(s)	99, 102, 171
BlsI	GCNGC	3 cut(s)	100, 103, 172
Bme1390I	CCNGG	1 cut(s)	304
Bme18I	GGWCC	1 cut(s)	321
BmeT110I	CYCGRG	1 cut(s)	583
BmgT120I	GGNCC	3 cut(s)	148, 149, 321
BmiI	GGNNCC	1 cut(s)	150
BmrFI	CCNGG	1 cut(s)	304
BmsI	GCATC	4 cut(s)	490, 649, 703, 728
BpiI	GAAGAC	2 cut(s)	256, 648
Bpu10I	CCTNAGC	1 cut(s)	380
BpuEI	CTTGAG	3 cut(s)	74, 346, 409
Bse1I	ACTGG	1 cut(s)	352
Bse3DI	GCAATG	1 cut(s)	684
BseBI	CCWGG	1 cut(s)	304
BseGI	GGATG	3 cut(s)	18, 379, 390
BseMI	GCAATG	1 cut(s)	684
BseMII	CTCAG	5 cut(s)	198, 201, 371, 642, 714
BseNI	ACTGG	1 cut(s)	352
BseRI	GAGGAG	2 cut(s)	47, 571
BseSI	GKGCMC	1 cut(s)	152
BseXI	GCAGC	2 cut(s)	88, 157
BshFI	GGCC	1 cut(s)	150
BsiHKCI	CYCGRG	1 cut(s)	583
BsmI	GAATGC	1 cut(s)	112
BsnI	GGCC	1 cut(s)	150
BsoBI	CYCGRG	1 cut(s)	583
Bsp120I	GGGCCC	1 cut(s)	148
Bsp1286I	GDGCHC	1 cut(s)	152
Bsp143I	GATC	2 cut(s)	140, 230
BspACI	CCGC	1 cut(s)	98
BspANI	GGCC	1 cut(s)	150
BspCNI	CTCAG	5 cut(s)	199, 200, 372, 643, 715
BspLI	GGNNCC	1 cut(s)	150
BsrDI	GCAATG	1 cut(s)	684
BsrI	ACTGG	1 cut(s)	352
BssMI	GATC	2 cut(s)	140, 230
Bst2UI	CCWGG	1 cut(s)	304
Bst4CI	ACNGT	2 cut(s)	278, 449
Bst6I	CTCTTC	4 cut(s)	40, 131, 519, 614
BstDEI	CTNAG	6 cut(s)	153, 187, 207, 380, 651, 723
BstF5I	GGATG	3 cut(s)	18, 379, 390
BstHHI	GCGC	1 cut(s)	492
BstKTI	GATC	2 cut(s)	143, 233
BstMBI	GATC	2 cut(s)	140, 230
BstMWI	GCNNNNNNNGC	4 cut(s)	107, 342, 415, 487
BstNI	CCWGG	1 cut(s)	304
BstNSI	RCATGY	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	302
BstSLI	GKGCMC	1 cut(s)	152
BstV1I	GCAGC	2 cut(s)	88, 157
BstV2I	GAAGAC	2 cut(s)	256, 648
BstX2I	RGATCY	1 cut(s)	230
BstYI	RGATCY	1 cut(s)	230
BsuRI	GGCC	1 cut(s)	150
BtgZI	GCGATG	2 cut(s)	351, 453
BtsCI	GGATG	3 cut(s)	18, 379, 390
BtsI	GCAGTG	1 cut(s)	499
BtsIMutI	CAGTG	3 cut(s)	283, 345, 499
CaiI	CAGNNNCTG	1 cut(s)	722
CfoI	GCGC	1 cut(s)	492
Cfr13I	GGNCC	3 cut(s)	148, 149, 321
CseI	GACGC	1 cut(s)	162
Csp6I	GTAC	1 cut(s)	450
CviAII	CATG	2 cut(s)	254, 704
CviQI	GTAC	1 cut(s)	450
DdeI	CTNAG	6 cut(s)	153, 187, 207, 380, 651, 723
DpnI	GATC	2 cut(s)	142, 232
DpnII	GATC	2 cut(s)	140, 230
DraI	TTTAAA	1 cut(s)	477
Eam1104I	CTCTTC	4 cut(s)	40, 131, 519, 614
EarI	CTCTTC	4 cut(s)	40, 131, 519, 614
Eco24I	GRGCYC	1 cut(s)	152
Eco47I	GGWCC	1 cut(s)	321
Eco88I	CYCGRG	1 cut(s)	583
EcoO109I	RGGNCCY	3 cut(s)	148, 149, 321
EcoRII	CCWGG	1 cut(s)	302
EcoT38I	GRGCYC	1 cut(s)	152
FaeI	CATG	2 cut(s)	257, 707
FaiI	YATR	7 cut(s)	255, 357, 420, 617, 633, 699, 705
FalI	AAGNNNNNCTT	2 cut(s)	418, 450
FatI	CATG	2 cut(s)	253, 703
Fnu4HI	GCNGC	3 cut(s)	99, 102, 171
FokI	GGATG	3 cut(s)	5, 386, 397
FriOI	GRGCYC	1 cut(s)	152
Fsp4HI	GCNGC	3 cut(s)	99, 102, 171
FspBI	CTAG	4 cut(s)	92, 183, 225, 690
GlaI	GCGC	1 cut(s)	491
GluI	GCNGC	3 cut(s)	99, 102, 171
HaeIII	GGCC	1 cut(s)	150
HgaI	GACGC	1 cut(s)	162
HhaI	GCGC	1 cut(s)	492
Hin1II	CATG	2 cut(s)	257, 707
Hin6I	GCGC	1 cut(s)	490
HinP1I	GCGC	1 cut(s)	490
HinfI	GANTC	6 cut(s)	179, 266, 328, 653, 713, 725
HphI	GGTGA	2 cut(s)	223, 362
Hpy188III	TCNNGA	4 cut(s)	22, 53, 225, 426
HpyAV	CCTTC	5 cut(s)	312, 534, 618, 678, 732
HpyCH4III	ACNGT	2 cut(s)	278, 449
HpyCH4V	TGCA	2 cut(s)	9, 257
HpyF10VI	GCNNNNNNNGC	4 cut(s)	107, 342, 415, 487
HpyF3I	CTNAG	6 cut(s)	153, 187, 207, 380, 651, 723
Hsp92II	CATG	2 cut(s)	257, 707
HspAI	GCGC	1 cut(s)	490
Kzo9I	GATC	2 cut(s)	140, 230
LmnI	GCTCC	2 cut(s)	73, 82
LpnPI	CCDG	6 cut(s)	35, 289, 316, 333, 472, 544
Lsp1109I	GCAGC	2 cut(s)	88, 157
LweI	GCATC	4 cut(s)	490, 649, 703, 728
MaeI	CTAG	4 cut(s)	92, 183, 225, 690
MaeIII	GTNAC	1 cut(s)	502
MalI	GATC	2 cut(s)	142, 232
MboI	GATC	2 cut(s)	140, 230
MflI	RGATCY	1 cut(s)	230
MhlI	GDGCHC	1 cut(s)	152
MlyI	GAGTC	3 cut(s)	337, 662, 734
MseI	TTAA	1 cut(s)	476
MslI	CAYNNNNRTG	2 cut(s)	23, 702
MspR9I	CCNGG	1 cut(s)	304
Mva1269I	GAATGC	1 cut(s)	112
MvaI	CCWGG	1 cut(s)	304
MwoI	GCNNNNNNNGC	4 cut(s)	107, 342, 415, 487
NdeII	GATC	2 cut(s)	140, 230
NlaIII	CATG	2 cut(s)	257, 707
NlaIV	GGNNCC	1 cut(s)	150
NmuCI	GTSAC	1 cut(s)	502
NspI	RCATGY	1 cut(s)	257
PaeR7I	CTCGAG	1 cut(s)	583
PctI	GAATGC	1 cut(s)	112
PfeI	GAWTC	3 cut(s)	179, 266, 713
PfoI	TCCNGGA	1 cut(s)	302
PkrI	GCNGC	3 cut(s)	100, 103, 172
PleI	GAGTC	3 cut(s)	336, 661, 733
PpsI	GAGTC	3 cut(s)	336, 661, 733
PpuMI	RGGWCCY	1 cut(s)	321
Psp5II	RGGWCCY	1 cut(s)	321
Psp6I	CCWGG	1 cut(s)	302
PspGI	CCWGG	1 cut(s)	302
PspN4I	GGNNCC	1 cut(s)	150
PspOMI	GGGCCC	1 cut(s)	148
PspPI	GGNCC	3 cut(s)	148, 149, 321
PspPPI	RGGWCCY	1 cut(s)	321
PspXI	VCTCGAGB	1 cut(s)	583
PstNI	CAGNNNCTG	1 cut(s)	722
PsuI	RGATCY	1 cut(s)	230
RsaI	GTAC	1 cut(s)	451
RsaNI	GTAC	1 cut(s)	450
RseI	CAYNNNNRTG	2 cut(s)	23, 702
SaqAI	TTAA	1 cut(s)	476
SatI	GCNGC	3 cut(s)	99, 102, 171
Sau3AI	GATC	2 cut(s)	140, 230
Sau96I	GGNCC	3 cut(s)	148, 149, 321
SchI	GAGTC	3 cut(s)	337, 662, 734
ScrFI	CCNGG	1 cut(s)	304
SduI	GDGCHC	1 cut(s)	152
SfaNI	GCATC	4 cut(s)	490, 649, 703, 728
Sfr274I	CTCGAG	1 cut(s)	583
SinI	GGWCC	1 cut(s)	321
SlaI	CTCGAG	1 cut(s)	583
SmiMI	CAYNNNNRTG	2 cut(s)	23, 702
SmlI	CTYRAG	4 cut(s)	53, 325, 424, 583
SmoI	CTYRAG	4 cut(s)	53, 325, 424, 583
SsiI	CCGC	1 cut(s)	98
SspMI	CTAG	4 cut(s)	92, 183, 225, 690
StyD4I	CCNGG	1 cut(s)	302
TaaI	ACNGT	2 cut(s)	278, 449
TaqI	TCGA	2 cut(s)	30, 584
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	3 cut(s)	179, 266, 713
Tru1I	TTAA	1 cut(s)	476
Tru9I	TTAA	1 cut(s)	476
TscAI	CASTG	3 cut(s)	283, 352, 499
TseFI	GTSAC	1 cut(s)	502
TseI	GCWGC	2 cut(s)	101, 170
Tsp45I	GTSAC	1 cut(s)	502
TspDTI	ATGAA	4 cut(s)	7, 372, 401, 632
TspRI	CASTG	3 cut(s)	283, 352, 499
VpaK11BI	GGWCC	1 cut(s)	321
XbaI	TCTAGA	1 cut(s)	224
XceI	RCATGY	1 cut(s)	257
XhoI	CTCGAG	1 cut(s)	583
XspI	CTAG	4 cut(s)	92, 183, 225, 690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.