Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004024

Physical Location & Seq

Genomic Coordinates Reverse (-)

30768981 .. 30771497

Gene Structure 2517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G320900.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGATACCAGGAGGTTCATGCAACTGGTTGAGGAGAAGAAGAAAAGAGCTTTGGAGAAGAAAGAAGCCCCTTTGAAATGGGAGCAGAAACTAGAAGCTGCTGCCAAGGCAAAAGCTGATGCTGAAGCCAAAGAGAGGAAGCTGAAATCTTCAAAGCATAAGAGAAGATCTGTGTCAGTTTCTGATAATGATAGTGACACTGACAGCAGTGATGGTAGAAGAAAGTCAAGTAAAAGAACTCACAAAAAGCACAAGAAGCACGCTCACTCAGATACAAGTGACAGTGAGAAGAGGAAGGAGAAGAAATCCAAGAGAAAGCCAAAGAGACATTCTTCAAGCTCAAGTGATGAAGGCAGTGATGAATATGAGAGTGATTACGAAGGAAATAGGAAGAGGAAGAAGCGAAACCACAAAAGGCACAGACATCATGATTCTAGATCAGACTCTGGTGCTTCCAATTCTTCCAGTGATGATGATATTGAGACAGTCAAGAGAAGTCATTCGAAGCACCACAGGCGCCATCAGAGGTCAGATTCAGATTCTTCTGGTTCTTACAGTGATGAGGATGAGAGAAGAATCCGAAGGGGTCATTCTAAGCACCACAAACGCCACCGACAGTTGAGATCCCTTTCTCCTGATTCTTCAAGTTATGAGGATGGTGATGTTAGAAGGAAAAGGCACGCAAAACACCGTAAACGTCATAGGCGATCAAGATCACCTAGTGTTGATTCTAGGTCAGCAGACTCTGATTCCCACTTACACGACAGAAGGAGCAGATCTTTAGGAAAGTCATCAGATGATAACCATGACGAAGCAGGTAAACAGTTGAGGCACAAGAGAAGTGGCCACCATTGCCATCATCACCACAAACATCGTTACCATCACTTAGATGAGGACAGAGATCCTGAGCCCAATGGAAAGCACATAGAAGATGCTAAAGGAAATGCAACTGATAACAACTACAATGATGCCCACGAGGATAAAATTAGTAGGCTTATCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

335

Amino Acids

39.25

Weight (kDa)

10.07

Isoelectric Point (pI)

89.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01100 AT2G01100 AT2G01100
fragaria_vesca	FvH4_4g26261 FvH4_4g26261 FvH4_4g26261 FvH4_4g26263
malus_domestica	MD13G1031200.v1.1 MD16G1033400.v1.1
prunus_persica	Prupe.1G320900_v2.0.a1 Prupe.1G320900_v2.0.a1 Prupe.1G320900_v2.0.a1
pyrus_communis	pycom13g02730 pycom16g02800
rosa_chinensis	RchiOBHm_Chr2g0167881 RchiOBHm_Chr2g0167891 RchiOBHm_Chr4g0433871
rosa_laevigata	RLG00000006721 RLG00000011334 RLG00000017078
rosa_multiflora	Rmu_sc0000352.1_g000002
rosa_roxburghii	Rroxscaffold_5G00375270
rosa_rugosa	Rorug04G0272000 Rorug04G0272000 Rorug04G0272000
rosa_samantha	Rh2BG014400 Rh4AG326700 Rh4DG330900 Rh5DG507000 Rh6AG509600 Rh7BG051000 Rh7CG171900
rosa_wichuraiana	Rw4G028320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	806
AccB1I	GGYRCC	1 cut(s)	516
AclWI	GGATC	2 cut(s)	618, 896
AcoI	YGGCCR	1 cut(s)	844
AcuI	CTGAAG	1 cut(s)	144
AcyI	GRCGYC	1 cut(s)	517
AdeI	CACNNNGTG	1 cut(s)	722
AfiI	CCNNNNNNNGG	1 cut(s)	135
AgsI	TTSAA	4 cut(s)	76, 153, 336, 645
AjnI	CCWGG	1 cut(s)	8
AjuI	GAANNNNNNNTTGG	4 cut(s)	35, 67, 313, 345
AluBI	AGCT	5 cut(s)	50, 98, 116, 142, 339
AluI	AGCT	5 cut(s)	50, 98, 116, 142, 339
Alw26I	GTCTC	2 cut(s)	319, 476
AlwI	GGATC	2 cut(s)	618, 896
AlwNI	CAGNNNCTG	3 cut(s)	182, 446, 746
AoxI	GGCC	1 cut(s)	844
ApeKI	GCWGC	2 cut(s)	98, 101
Asp700I	GAANNNNTTC	1 cut(s)	499
AspLEI	GCGC	1 cut(s)	519
AsuHPI	GGTGA	3 cut(s)	671, 708, 854
AsuII	TTCGAA	1 cut(s)	503
BalI	TGGCCA	1 cut(s)	846
BanI	GGYRCC	1 cut(s)	516
BanII	GRGCYC	1 cut(s)	912
BauI	CACGAG	1 cut(s)	974
BbvI	GCAGC	2 cut(s)	85, 88
BccI	CCATC	5 cut(s)	206, 528, 650, 864, 888
BciT130I	CCWGG	1 cut(s)	10
BcoDI	GTCTC	2 cut(s)	319, 476
BfaI	CTAG	4 cut(s)	92, 435, 720, 732
BfoI	RGCGCY	1 cut(s)	520
BfuAI	ACCTGC	1 cut(s)	806
BglII	AGATCT	2 cut(s)	167, 776
BisI	GCNGC	2 cut(s)	99, 102
BlsI	GCNGC	2 cut(s)	100, 103
Bme1390I	CCNGG	1 cut(s)	10
BmiI	GGNNCC	1 cut(s)	518
BmrFI	CCNGG	1 cut(s)	10
BmsI	GCATC	3 cut(s)	109, 922, 958
Bpu10I	CCTNAGC	1 cut(s)	906
Bpu14I	TTCGAA	1 cut(s)	503
BpuEI	CTTGAG	1 cut(s)	325
BsaBI	GATNNNNATC	1 cut(s)	712
BsaHI	GRCGYC	1 cut(s)	517
BsaJI	CCNNGG	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	1 cut(s)	135
Bse1I	ACTGG	2 cut(s)	30, 465
Bse3DI	GCAATG	1 cut(s)	850
Bse8I	GATNNNNATC	1 cut(s)	712
BseBI	CCWGG	1 cut(s)	10
BseDI	CCNNGG	1 cut(s)	105
BseGI	GGATG	2 cut(s)	571, 661
BseJI	GATNNNNATC	1 cut(s)	712
BseLI	CCNNNNNNNGG	1 cut(s)	135
BseMI	GCAATG	1 cut(s)	850
BseMII	CTCAG	2 cut(s)	282, 897
BseNI	ACTGG	2 cut(s)	30, 465
BseRI	GAGGAG	1 cut(s)	47
BseXI	GCAGC	2 cut(s)	85, 88
BshFI	GGCC	1 cut(s)	846
BshNI	GGYRCC	1 cut(s)	516
BslI	CCNNNNNNNGG	1 cut(s)	135
BsmAI	GTCTC	2 cut(s)	319, 476
BsnI	GGCC	1 cut(s)	846
Bsp119I	TTCGAA	1 cut(s)	503
Bsp1286I	GDGCHC	1 cut(s)	912
Bsp143I	GATC	7 cut(s)	167, 437, 623, 707, 713, 776, 901
BspANI	GGCC	1 cut(s)	846
BspCNI	CTCAG	2 cut(s)	281, 898
BspHI	TCATGA	1 cut(s)	427
BspLI	GGNNCC	1 cut(s)	518
BspMI	ACCTGC	1 cut(s)	806
BspPI	GGATC	2 cut(s)	618, 896
BspT104I	TTCGAA	1 cut(s)	503
BspT107I	GGYRCC	1 cut(s)	516
BsrDI	GCAATG	1 cut(s)	850
BsrI	ACTGG	2 cut(s)	30, 465
BssECI	CCNNGG	1 cut(s)	105
BssMI	GATC	7 cut(s)	167, 437, 623, 707, 713, 776, 901
BssNI	GRCGYC	1 cut(s)	517
BssSI	CACGAG	1 cut(s)	974
BssT1I	CCWWGG	1 cut(s)	105
Bst2BI	CACGAG	1 cut(s)	974
Bst2UI	CCWGG	1 cut(s)	10
Bst4CI	ACNGT	6 cut(s)	284, 487, 557, 618, 692, 825
Bst6I	CTCTTC	2 cut(s)	284, 386
BstACI	GRCGYC	1 cut(s)	517
BstBI	TTCGAA	1 cut(s)	503
BstC8I	GCNNGC	2 cut(s)	261, 681
BstDEI	CTNAG	4 cut(s)	268, 594, 886, 906
BstF5I	GGATG	2 cut(s)	571, 661
BstH2I	RGCGCY	1 cut(s)	520
BstHHI	GCGC	1 cut(s)	519
BstKTI	GATC	7 cut(s)	170, 440, 626, 710, 716, 779, 904
BstMAI	GTCTC	2 cut(s)	319, 476
BstMBI	GATC	7 cut(s)	167, 437, 623, 707, 713, 776, 901
BstMWI	GCNNNNNNNGC	4 cut(s)	107, 256, 514, 852
BstNI	CCWGG	1 cut(s)	10
BstSCI	CCNGG	1 cut(s)	8
BstV1I	GCAGC	2 cut(s)	85, 88
BstX2I	RGATCY	4 cut(s)	167, 623, 776, 901
BstYI	RGATCY	4 cut(s)	167, 623, 776, 901
BsuRI	GGCC	1 cut(s)	846
BtsCI	GGATG	2 cut(s)	571, 661
BtsI	GCAGTG	2 cut(s)	214, 361
BtsIMutI	CAGTG	6 cut(s)	198, 214, 289, 361, 472, 562
BveI	ACCTGC	1 cut(s)	806
Cac8I	GCNNGC	2 cut(s)	261, 681
CaiI	CAGNNNCTG	3 cut(s)	182, 446, 746
CciI	TCATGA	1 cut(s)	427
CfoI	GCGC	1 cut(s)	519
CspCI	CAANNNNNGTGG	2 cut(s)	823, 858
CviAII	CATG	3 cut(s)	19, 428, 806
DdeI	CTNAG	4 cut(s)	268, 594, 886, 906
DinI	GGCGCC	1 cut(s)	518
DpnI	GATC	7 cut(s)	169, 439, 625, 709, 715, 778, 903
DpnII	GATC	7 cut(s)	167, 437, 623, 707, 713, 776, 901
DraIII	CACNNNGTG	1 cut(s)	722
EaeI	YGGCCR	1 cut(s)	844
Eam1104I	CTCTTC	2 cut(s)	284, 386
EarI	CTCTTC	2 cut(s)	284, 386
Eco130I	CCWWGG	1 cut(s)	105
Eco24I	GRGCYC	1 cut(s)	912
Eco57I	CTGAAG	1 cut(s)	144
EcoRII	CCWGG	1 cut(s)	8
EcoT14I	CCWWGG	1 cut(s)	105
EcoT38I	GRGCYC	1 cut(s)	912
EgeI	GGCGCC	1 cut(s)	518
EheI	GGCGCC	1 cut(s)	518
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	3 cut(s)	22, 431, 809
FaiI	YATR	8 cut(s)	20, 159, 366, 429, 651, 702, 807, 926
FatI	CATG	3 cut(s)	18, 427, 805
Fnu4HI	GCNGC	2 cut(s)	99, 102
FokI	GGATG	2 cut(s)	578, 668
FriOI	GRGCYC	1 cut(s)	912
Fsp4HI	GCNGC	2 cut(s)	99, 102
FspBI	CTAG	4 cut(s)	92, 435, 720, 732
GlaI	GCGC	1 cut(s)	518
GluI	GCNGC	2 cut(s)	99, 102
HaeII	RGCGCY	1 cut(s)	520
HaeIII	GGCC	1 cut(s)	846
HhaI	GCGC	1 cut(s)	519
Hin1I	GRCGYC	1 cut(s)	517
Hin1II	CATG	3 cut(s)	22, 431, 809
Hin6I	GCGC	1 cut(s)	517
HinP1I	GCGC	1 cut(s)	517
HinfI	GANTC	9 cut(s)	431, 443, 533, 539, 576, 638, 728, 743, 749
HphI	GGTGA	3 cut(s)	671, 708, 854
Hpy166II	GTNNAC	2 cut(s)	695, 821
Hpy188I	TCNGA	9 cut(s)	184, 271, 442, 525, 532, 538, 581, 748, 796
Hpy188III	TCNNGA	6 cut(s)	428, 435, 490, 635, 711, 905
Hpy8I	GTNNAC	2 cut(s)	695, 821
HpyAV	CCTTC	6 cut(s)	289, 344, 374, 576, 663, 762
HpyCH4III	ACNGT	6 cut(s)	284, 487, 557, 618, 692, 825
HpyCH4IV	ACGT	1 cut(s)	697
HpyCH4V	TGCA	2 cut(s)	22, 947
HpyF10VI	GCNNNNNNNGC	4 cut(s)	107, 256, 514, 852
HpyF3I	CTNAG	4 cut(s)	268, 594, 886, 906
HpySE526I	ACGT	1 cut(s)	697
Hsp92I	GRCGYC	1 cut(s)	517
Hsp92II	CATG	3 cut(s)	22, 431, 809
HspAI	GCGC	1 cut(s)	517
KasI	GGCGCC	1 cut(s)	516
Kzo9I	GATC	7 cut(s)	167, 437, 623, 707, 713, 776, 901
LmnI	GCTCC	2 cut(s)	82, 771
LpnPI	CCDG	9 cut(s)	11, 22, 432, 478, 499, 531, 648, 801, 918
Lsp1109I	GCAGC	2 cut(s)	85, 88
LweI	GCATC	3 cut(s)	109, 922, 958
MaeI	CTAG	4 cut(s)	92, 435, 720, 732
MaeII	ACGT	1 cut(s)	697
MaeIII	GTNAC	3 cut(s)	194, 278, 875
MalI	GATC	7 cut(s)	169, 439, 625, 709, 715, 778, 903
MboI	GATC	7 cut(s)	167, 437, 623, 707, 713, 776, 901
MflI	RGATCY	4 cut(s)	167, 623, 776, 901
MhlI	GDGCHC	1 cut(s)	912
MlsI	TGGCCA	1 cut(s)	846
MluCI	AATT	2 cut(s)	457, 984
MluNI	TGGCCA	1 cut(s)	846
Mly113I	GGCGCC	1 cut(s)	517
MlyI	GAGTC	2 cut(s)	437, 737
Mox20I	TGGCCA	1 cut(s)	846
MroXI	GAANNNNTTC	1 cut(s)	499
MscI	TGGCCA	1 cut(s)	846
MseI	TTAA	1 cut(s)	1003
MslI	CAYNNNNRTG	1 cut(s)	888
Msp20I	TGGCCA	1 cut(s)	846
MspR9I	CCNGG	1 cut(s)	10
MvaI	CCWGG	1 cut(s)	10
MwoI	GCNNNNNNNGC	4 cut(s)	107, 256, 514, 852
NarI	GGCGCC	1 cut(s)	517
NdeII	GATC	7 cut(s)	167, 437, 623, 707, 713, 776, 901
NlaIII	CATG	3 cut(s)	22, 431, 809
NlaIV	GGNNCC	1 cut(s)	518
NmuCI	GTSAC	2 cut(s)	194, 278
NspV	TTCGAA	1 cut(s)	503
PagI	TCATGA	1 cut(s)	427
PcsI	WCGNNNNNNNCGW	1 cut(s)	703
PdmI	GAANNNNTTC	1 cut(s)	499
PfeI	GAWTC	7 cut(s)	431, 533, 539, 576, 638, 728, 749
PkrI	GCNGC	2 cut(s)	100, 103
PleI	GAGTC	2 cut(s)	437, 737
PluTI	GGCGCC	1 cut(s)	520
PpsI	GAGTC	2 cut(s)	437, 737
Psp6I	CCWGG	1 cut(s)	8
PspGI	CCWGG	1 cut(s)	8
PspN4I	GGNNCC	1 cut(s)	518
PstNI	CAGNNNCTG	3 cut(s)	182, 446, 746
PsuI	RGATCY	4 cut(s)	167, 623, 776, 901
RseI	CAYNNNNRTG	1 cut(s)	888
SaqAI	TTAA	1 cut(s)	1003
SatI	GCNGC	2 cut(s)	99, 102
Sau3AI	GATC	7 cut(s)	167, 437, 623, 707, 713, 776, 901
SchI	GAGTC	2 cut(s)	437, 737
ScrFI	CCNGG	1 cut(s)	10
SduI	GDGCHC	1 cut(s)	912
SfaNI	GCATC	3 cut(s)	109, 922, 958
SfoI	GGCGCC	1 cut(s)	518
SfuI	TTCGAA	1 cut(s)	503
SmiMI	CAYNNNNRTG	1 cut(s)	888
SmlI	CTYRAG	1 cut(s)	340
SmoI	CTYRAG	1 cut(s)	340
Sse9I	AATT	2 cut(s)	457, 984
SspDI	GGCGCC	1 cut(s)	516
SspMI	CTAG	4 cut(s)	92, 435, 720, 732
StyD4I	CCNGG	1 cut(s)	8
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	6 cut(s)	284, 487, 557, 618, 692, 825
TaiI	ACGT	1 cut(s)	700
TaqI	TCGA	1 cut(s)	503
TasI	AATT	2 cut(s)	457, 984
TfiI	GAWTC	7 cut(s)	431, 533, 539, 576, 638, 728, 749
Tru1I	TTAA	1 cut(s)	1003
Tru9I	TTAA	1 cut(s)	1003
TscAI	CASTG	6 cut(s)	205, 214, 289, 361, 472, 562
TseFI	GTSAC	2 cut(s)	194, 278
TseI	GCWGC	2 cut(s)	98, 101
Tsp45I	GTSAC	2 cut(s)	194, 278
TspDTI	ATGAA	3 cut(s)	7, 363, 375
TspRI	CASTG	6 cut(s)	205, 214, 289, 361, 472, 562
XbaI	TCTAGA	1 cut(s)	434
XmnI	GAANNNNTTC	1 cut(s)	499
XspI	CTAG	4 cut(s)	92, 435, 720, 732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.