RLG00000011334

Sarcoplasmic reticulum histidine-rich calcium-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0004024
Physical Location & Seq
Forward (+)
8660740 .. 8661809
1070 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011334

Sequence Viewer

Length: 531 bp
ATGAAACTACTGCCTAACGTCCTCGACAGGCCTCTCAGCAAAGGAAAACAAGAGGTCAGTTTGAGTGCATTTGCGTTCTTGTTTTCAGAGCTTGTGCAATACAGCCAAACACAGAGAAGAATCAGAAGAAGTCATGCAAAGCACCCTAAACACCACCGGCAGTTGAAATCTGTTTCTTCTGATTCTTCTAGTTATGAGGATGGTGAGATCAAAAGGAAAAGTCATGCAAAGCACCATAAATGTCATAGGCGACCAAATAGTGTTGATTCAAGGTCATTGGAGTCAGATTCGTATATGCGTGACAGAAGAAGCAGATCTTTAGGGAAGTCATCAGATGACAACCATGATGAGGCAGGTAAACATTTGAAGGACAAGAAAAATGGCCACCACCATCATCATAGACATGGTCATAATCATTACTCAGGAGAGGAGAAAGATCACCATCATCGGGATTCAGTTAAGCCCCATGGAAAGCACATCAAAGACCACAGTAGAAATGGAACTGATGACATTAATGATGGTAATGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

20.47

Weight (kDa)

9.89

Isoelectric Point (pI)

60.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 344
AcoI YGGCCR 1 cut(s) 382
AfiI CCNNNNNNNGG 2 cut(s) 349, 448
AgsI TTSAA 3 cut(s) 166, 270, 367
AluBI AGCT 1 cut(s) 91
AluI AGCT 1 cut(s) 91
AoxI GGCC 2 cut(s) 29, 382
AseI ATTAAT 1 cut(s) 513
AsuHPI GGTGA 2 cut(s) 215, 431
BalI TGGCCA 1 cut(s) 384
BccI CCATC 4 cut(s) 194, 399, 450, 512
BfaI CTAG 1 cut(s) 189
BfuAI ACCTGC 1 cut(s) 344
BglII AGATCT 1 cut(s) 314
BsaBI GATNNNNATC 1 cut(s) 441
BsaJI CCNNGG 1 cut(s) 466
Bsc4I CCNNNNNNNGG 2 cut(s) 349, 448
Bse118I RCCGGY 1 cut(s) 156
Bse8I GATNNNNATC 1 cut(s) 441
BseDI CCNNGG 1 cut(s) 466
BseGI GGATG 1 cut(s) 205
BseJI GATNNNNATC 1 cut(s) 441
BseLI CCNNNNNNNGG 2 cut(s) 349, 448
BseMII CTCAG 2 cut(s) 49, 435
BseRI GAGGAG 1 cut(s) 443
BshFI GGCC 2 cut(s) 31, 384
BsiSI CCGG 1 cut(s) 157
BslI CCNNNNNNNGG 2 cut(s) 349, 448
BsnI GGCC 2 cut(s) 31, 384
Bsp143I GATC 3 cut(s) 207, 314, 436
Bsp19I CCATGG 1 cut(s) 466
BspANI GGCC 2 cut(s) 31, 384
BspCNI CTCAG 2 cut(s) 48, 434
BspMI ACCTGC 1 cut(s) 344
BsrFI RCCGGY 1 cut(s) 156
BssAI RCCGGY 1 cut(s) 156
BssECI CCNNGG 1 cut(s) 466
BssMI GATC 3 cut(s) 207, 314, 436
BssT1I CCWWGG 1 cut(s) 466
Bst4CI ACNGT 1 cut(s) 491
BstDEI CTNAG 2 cut(s) 35, 421
BstDSI CCRYGG 1 cut(s) 466
BstF5I GGATG 1 cut(s) 205
BstKTI GATC 3 cut(s) 210, 317, 439
BstMBI GATC 3 cut(s) 207, 314, 436
BstX2I RGATCY 1 cut(s) 314
BstYI RGATCY 1 cut(s) 314
BsuRI GGCC 2 cut(s) 31, 384
BtgI CCRYGG 1 cut(s) 466
BtsCI GGATG 1 cut(s) 205
BveI ACCTGC 1 cut(s) 344
Cfr10I RCCGGY 1 cut(s) 156
CviAII CATG 5 cut(s) 134, 224, 344, 404, 467
CviJI RGCY 5 cut(s) 31, 91, 105, 384, 463
CviKI_1 RGCY 5 cut(s) 31, 91, 105, 384, 463
DdeI CTNAG 2 cut(s) 35, 421
DpnI GATC 3 cut(s) 209, 316, 438
DpnII GATC 3 cut(s) 207, 314, 436
EaeI YGGCCR 1 cut(s) 382
Eco130I CCWWGG 1 cut(s) 466
Eco147I AGGCCT 1 cut(s) 31
EcoT14I CCWWGG 1 cut(s) 466
ErhI CCWWGG 1 cut(s) 466
FaeI CATG 5 cut(s) 137, 227, 347, 407, 470
FalI AAGNNNNNCTT 2 cut(s) 301, 333
FatI CATG 5 cut(s) 133, 223, 343, 403, 466
FokI GGATG 1 cut(s) 212
FspBI CTAG 1 cut(s) 189
HaeIII GGCC 2 cut(s) 31, 384
HapII CCGG 1 cut(s) 157
Hin1II CATG 5 cut(s) 137, 227, 347, 407, 470
HinfI GANTC 6 cut(s) 120, 182, 266, 281, 287, 452
HpaII CCGG 1 cut(s) 157
HphI GGTGA 2 cut(s) 215, 431
Hpy166II GTNNAC 1 cut(s) 359
Hpy188I TCNGA 5 cut(s) 88, 125, 181, 286, 334
Hpy188III TCNNGA 2 cut(s) 423, 449
Hpy8I GTNNAC 1 cut(s) 359
HpyAV CCTTC 1 cut(s) 361
HpyCH4III ACNGT 1 cut(s) 491
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 4 cut(s) 68, 97, 137, 227
HpyF3I CTNAG 2 cut(s) 35, 421
HpySE526I ACGT 1 cut(s) 18
Hsp92II CATG 5 cut(s) 137, 227, 347, 407, 470
Kzo9I GATC 3 cut(s) 207, 314, 436
LpnPI CCDG 4 cut(s) 13, 170, 339, 408
MaeI CTAG 1 cut(s) 189
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 1 cut(s) 299
MalI GATC 3 cut(s) 209, 316, 438
MboI GATC 3 cut(s) 207, 314, 436
MboII GAAGA 5 cut(s) 129, 138, 168, 177, 318
MflI RGATCY 1 cut(s) 314
MlsI TGGCCA 1 cut(s) 384
MluNI TGGCCA 1 cut(s) 384
MlyI GAGTC 1 cut(s) 290
MnlI CCTC 6 cut(s) 32, 42, 46, 190, 343, 421
Mox20I TGGCCA 1 cut(s) 384
MscI TGGCCA 1 cut(s) 384
MseI TTAA 2 cut(s) 459, 513
MslI CAYNNNNRTG 1 cut(s) 402
Msp20I TGGCCA 1 cut(s) 384
MspI CCGG 1 cut(s) 157
NcoI CCATGG 1 cut(s) 466
NdeII GATC 3 cut(s) 207, 314, 436
NlaIII CATG 5 cut(s) 137, 227, 347, 407, 470
NmuCI GTSAC 1 cut(s) 299
PceI AGGCCT 1 cut(s) 31
PfeI GAWTC 5 cut(s) 120, 182, 266, 287, 452
PflFI GACNNNGTC 1 cut(s) 405
PleI GAGTC 1 cut(s) 289
PpsI GAGTC 1 cut(s) 289
PshBI ATTAAT 1 cut(s) 513
PsuI RGATCY 1 cut(s) 314
PsyI GACNNNGTC 1 cut(s) 405
RseI CAYNNNNRTG 1 cut(s) 402
SaqAI TTAA 2 cut(s) 459, 513
Sau3AI GATC 3 cut(s) 207, 314, 436
SchI GAGTC 1 cut(s) 290
SetI ASST 5 cut(s) 21, 57, 93, 275, 358
SmiMI CAYNNNNRTG 1 cut(s) 402
SseBI AGGCCT 1 cut(s) 31
SspMI CTAG 1 cut(s) 189
StuI AGGCCT 1 cut(s) 31
StyI CCWWGG 1 cut(s) 466
TaaI ACNGT 1 cut(s) 491
TaiI ACGT 1 cut(s) 21
TaqI TCGA 1 cut(s) 24
TfiI GAWTC 5 cut(s) 120, 182, 266, 287, 452
Tru1I TTAA 2 cut(s) 459, 513
Tru9I TTAA 2 cut(s) 459, 513
TseFI GTSAC 1 cut(s) 299
Tsp45I GTSAC 1 cut(s) 299
TspDTI ATGAA 1 cut(s) 17
Tth111I GACNNNGTC 1 cut(s) 405
VspI ATTAAT 1 cut(s) 513
XcmI CCANNNNNNNNNTGG 1 cut(s) 494
XspI CTAG 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.