Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0004024

Physical Location & Seq

Genomic Coordinates Forward (+)

3350721 .. 3351664

Gene Structure 944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG051000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGCGTGACAGAAGAAGCAGATCTTTAGGGAAGTCATCAGATGACAACCATGATGAGGCAGGTAAACATTTGAAGGACAAGAAAAATGGCCACCACCATCATCATAGACATGGTCACAATCATTACTCAGGAGAGGAGAAAGATCACCATCATCGGGATTCAGTTAAGCCCCATGGAAAGCACATCAAAGACCACAGTAGAAATGGAACTGATGACATTAATGATGGGTATCATGAAATTGGTTCTCAGGAGTTTAGACTTTCATTCAACACACAAACGGAAAATGTCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

97

Amino Acids

11.37

Weight (kDa)

8.17

Isoelectric Point (pI)

42.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01100 AT2G01100 AT2G01100
fragaria_vesca	FvH4_4g26261 FvH4_4g26261 FvH4_4g26261 FvH4_4g26263
malus_domestica	MD13G1031200.v1.1 MD16G1033400.v1.1
prunus_persica	Prupe.1G320900_v2.0.a1 Prupe.1G320900_v2.0.a1 Prupe.1G320900_v2.0.a1
pyrus_communis	pycom13g02730 pycom16g02800
rosa_chinensis	RchiOBHm_Chr2g0167881 RchiOBHm_Chr2g0167891 RchiOBHm_Chr4g0433871
rosa_laevigata	RLG00000006721 RLG00000011334 RLG00000017078
rosa_multiflora	Rmu_sc0000352.1_g000002
rosa_roxburghii	Rroxscaffold_5G00375270
rosa_rugosa	Rorug04G0272000 Rorug04G0272000 Rorug04G0272000
rosa_samantha	Rh2BG014400 Rh4AG326700 Rh4DG330900 Rh5DG507000 Rh6AG509600 Rh7BG051000 Rh7CG171900
rosa_wichuraiana	Rw4G028320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	50
AcoI	YGGCCR	1 cut(s)	88
AfiI	CCNNNNNNNGG	2 cut(s)	55, 154
AgsI	TTSAA	2 cut(s)	73, 268
AoxI	GGCC	1 cut(s)	88
AseI	ATTAAT	1 cut(s)	219
AsuHPI	GGTGA	1 cut(s)	137
BalI	TGGCCA	1 cut(s)	90
BccI	CCATC	3 cut(s)	105, 156, 218
BfuAI	ACCTGC	1 cut(s)	50
BglII	AGATCT	1 cut(s)	20
BsaBI	GATNNNNATC	2 cut(s)	147, 228
BsaJI	CCNNGG	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 154
Bse8I	GATNNNNATC	2 cut(s)	147, 228
BseDI	CCNNGG	1 cut(s)	172
BseJI	GATNNNNATC	2 cut(s)	147, 228
BseLI	CCNNNNNNNGG	2 cut(s)	55, 154
BseMII	CTCAG	2 cut(s)	141, 260
BseRI	GAGGAG	1 cut(s)	149
BshFI	GGCC	1 cut(s)	90
BslI	CCNNNNNNNGG	2 cut(s)	55, 154
BsnI	GGCC	1 cut(s)	90
Bsp143I	GATC	2 cut(s)	20, 142
Bsp19I	CCATGG	1 cut(s)	172
BspANI	GGCC	1 cut(s)	90
BspCNI	CTCAG	2 cut(s)	140, 259
BspHI	TCATGA	1 cut(s)	232
BspMI	ACCTGC	1 cut(s)	50
BssECI	CCNNGG	1 cut(s)	172
BssMI	GATC	2 cut(s)	20, 142
BssT1I	CCWWGG	1 cut(s)	172
Bst4CI	ACNGT	1 cut(s)	197
BstDEI	CTNAG	2 cut(s)	127, 246
BstDSI	CCRYGG	1 cut(s)	172
BstKTI	GATC	2 cut(s)	23, 145
BstMBI	GATC	2 cut(s)	20, 142
BstX2I	RGATCY	1 cut(s)	20
BstYI	RGATCY	1 cut(s)	20
BsuRI	GGCC	1 cut(s)	90
BtgI	CCRYGG	1 cut(s)	172
BveI	ACCTGC	1 cut(s)	50
CciI	TCATGA	1 cut(s)	232
CviAII	CATG	4 cut(s)	50, 110, 173, 233
CviJI	RGCY	2 cut(s)	90, 169
CviKI_1	RGCY	2 cut(s)	90, 169
DdeI	CTNAG	2 cut(s)	127, 246
DpnI	GATC	2 cut(s)	22, 144
DpnII	GATC	2 cut(s)	20, 142
EaeI	YGGCCR	1 cut(s)	88
Eco130I	CCWWGG	1 cut(s)	172
EcoT14I	CCWWGG	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	172
FaeI	CATG	4 cut(s)	53, 113, 176, 236
FaiI	YATR	5 cut(s)	51, 105, 111, 174, 234
FalI	AAGNNNNNCTT	2 cut(s)	7, 39
FatI	CATG	4 cut(s)	49, 109, 172, 232
HaeIII	GGCC	1 cut(s)	90
Hin1II	CATG	4 cut(s)	53, 113, 176, 236
HinfI	GANTC	1 cut(s)	158
HphI	GGTGA	1 cut(s)	137
Hpy166II	GTNNAC	1 cut(s)	65
Hpy188I	TCNGA	1 cut(s)	40
Hpy188III	TCNNGA	4 cut(s)	129, 155, 233, 248
Hpy8I	GTNNAC	1 cut(s)	65
HpyAV	CCTTC	1 cut(s)	67
HpyCH4III	ACNGT	1 cut(s)	197
HpyF3I	CTNAG	2 cut(s)	127, 246
Hsp92II	CATG	4 cut(s)	53, 113, 176, 236
Kzo9I	GATC	2 cut(s)	20, 142
LpnPI	CCDG	3 cut(s)	45, 114, 233
MaeIII	GTNAC	2 cut(s)	5, 113
MalI	GATC	2 cut(s)	22, 144
MboI	GATC	2 cut(s)	20, 142
MboII	GAAGA	1 cut(s)	24
MflI	RGATCY	1 cut(s)	20
MlsI	TGGCCA	1 cut(s)	90
MluCI	AATT	1 cut(s)	237
MluNI	TGGCCA	1 cut(s)	90
MnlI	CCTC	2 cut(s)	49, 127
Mox20I	TGGCCA	1 cut(s)	90
MscI	TGGCCA	1 cut(s)	90
MseI	TTAA	2 cut(s)	165, 219
MslI	CAYNNNNRTG	1 cut(s)	108
Msp20I	TGGCCA	1 cut(s)	90
NcoI	CCATGG	1 cut(s)	172
NdeII	GATC	2 cut(s)	20, 142
NlaIII	CATG	4 cut(s)	53, 113, 176, 236
NmuCI	GTSAC	2 cut(s)	5, 113
PagI	TCATGA	1 cut(s)	232
PfeI	GAWTC	1 cut(s)	158
PflFI	GACNNNGTC	1 cut(s)	111
PshBI	ATTAAT	1 cut(s)	219
PsuI	RGATCY	1 cut(s)	20
PsyI	GACNNNGTC	1 cut(s)	111
RseI	CAYNNNNRTG	1 cut(s)	108
SaqAI	TTAA	2 cut(s)	165, 219
Sau3AI	GATC	2 cut(s)	20, 142
SetI	ASST	1 cut(s)	64
SmiMI	CAYNNNNRTG	1 cut(s)	108
Sse9I	AATT	1 cut(s)	237
StyI	CCWWGG	1 cut(s)	172
TaaI	ACNGT	1 cut(s)	197
TasI	AATT	1 cut(s)	237
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	2 cut(s)	165, 219
Tru9I	TTAA	2 cut(s)	165, 219
TseFI	GTSAC	2 cut(s)	5, 113
Tsp45I	GTSAC	2 cut(s)	5, 113
TspDTI	ATGAA	2 cut(s)	249, 252
TspGWI	ACGGA	1 cut(s)	293
Tth111I	GACNNNGTC	1 cut(s)	111
VspI	ATTAAT	1 cut(s)	219
XcmI	CCANNNNNNNNNTGG	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.