Rh2BG014400

Trafficking protein particle complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0004024
Physical Location & Seq
Reverse (-)
1077921 .. 1079552
1632 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG014400.1

Sequence Viewer

Length: 384 bp
ATGATCGGAGTCGGGAAGATGAAGCAGTACTCTAACGTCCTCGACAGGCCTCTCAGCAAAGGAAAACAAGAGGTGAGTTTGAGTGCTTTTGCGTTCTTGTTTTCGGAGCTGGTGCAGTACAATCAGACTCAGGTTGACAACATTGCCGAGCTAGAAAGAAGGTTGGAGGATGCAGGCTATGCTGTTGGAGCTCGAGTTCTGGAGCTTCTTTGCCATAGGGATAAGGGAAACAGAAGGGAGACACGACTGTTGGGTATCCTGTCTTTTGTGCATAGCACAGTATGGAAGGTGTTATTCGGAAAGGTAGCTGATTCATTAGAGAAAGGCACTGAACATGAAGACGAGTACATGATTAGCGAGAAGGAACTCCTTGTGAACAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TRAPP

Protein Analysis

127

Amino Acids

14.5

Weight (kDa)

6.31

Isoelectric Point (pI)

33.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAPP PF04051 30 - 127 4.3e-28 Transport protein particle (TRAPP) component
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 3 cut(s) 29, 119, 347
AloI GAACNNNNNNTCC 2 cut(s) 180, 212
AluBI AGCT 5 cut(s) 109, 151, 191, 205, 308
AluI AGCT 5 cut(s) 109, 151, 191, 205, 308
Alw21I GWGCWC 1 cut(s) 193
Alw26I GTCTC 1 cut(s) 233
Ama87I CYCGRG 1 cut(s) 192
AoxI GGCC 1 cut(s) 47
AsuHPI GGTGA 1 cut(s) 85
AvaI CYCGRG 1 cut(s) 192
BanII GRGCYC 1 cut(s) 193
BbsI GAAGAC 1 cut(s) 345
Bbv12I GWGCWC 1 cut(s) 193
BciVI GTATCC 1 cut(s) 266
BcoDI GTCTC 1 cut(s) 233
BfaI CTAG 1 cut(s) 152
BfuI GTATCC 1 cut(s) 266
BmcAI AGTACT 1 cut(s) 29
BmeT110I CYCGRG 1 cut(s) 192
BmsI GCATC 1 cut(s) 160
BpiI GAAGAC 1 cut(s) 345
BpmI CTGGAG 1 cut(s) 221
BsaXI ACNNNNNCTCC 2 cut(s) 180, 210
Bse3DI GCAATG 1 cut(s) 141
BseGI GGATG 1 cut(s) 175
BseMI GCAATG 1 cut(s) 141
BseMII CTCAG 2 cut(s) 67, 143
BsgI GTGCAG 1 cut(s) 134
BshFI GGCC 1 cut(s) 49
BsiHKAI GWGCWC 1 cut(s) 193
BsiHKCI CYCGRG 1 cut(s) 192
BsmAI GTCTC 1 cut(s) 233
BsnI GGCC 1 cut(s) 49
BsoBI CYCGRG 1 cut(s) 192
Bsp1286I GDGCHC 1 cut(s) 193
Bsp143I GATC 1 cut(s) 3
BspANI GGCC 1 cut(s) 49
BspCNI CTCAG 2 cut(s) 66, 142
BsrDI GCAATG 1 cut(s) 141
BssMI GATC 1 cut(s) 3
Bst4CI ACNGT 2 cut(s) 249, 280
BstAPI GCANNNNNTGC 1 cut(s) 179
BstC8I GCNNGC 1 cut(s) 175
BstDEI CTNAG 2 cut(s) 53, 129
BstF5I GGATG 1 cut(s) 175
BstKTI GATC 1 cut(s) 6
BstMAI GTCTC 1 cut(s) 233
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 2 cut(s) 179, 188
BstV2I GAAGAC 1 cut(s) 345
BsuI GTATCC 1 cut(s) 266
BsuRI GGCC 1 cut(s) 49
BtsCI GGATG 1 cut(s) 175
BtsIMutI CAGTG 1 cut(s) 327
Cac8I GCNNGC 1 cut(s) 175
Csp6I GTAC 3 cut(s) 28, 118, 346
CviAII CATG 2 cut(s) 335, 349
CviJI RGCY 7 cut(s) 49, 109, 151, 177, 191, 205, 308
CviKI_1 RGCY 7 cut(s) 49, 109, 151, 177, 191, 205, 308
CviQI GTAC 3 cut(s) 28, 118, 346
DdeI CTNAG 2 cut(s) 53, 129
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 191
Eco147I AGGCCT 1 cut(s) 49
Eco24I GRGCYC 1 cut(s) 193
Eco53kI GAGCTC 1 cut(s) 191
Eco88I CYCGRG 1 cut(s) 192
EcoICRI GAGCTC 1 cut(s) 191
EcoT38I GRGCYC 1 cut(s) 193
FaeI CATG 2 cut(s) 338, 352
FaiI YATR 6 cut(s) 180, 216, 273, 283, 336, 350
FatI CATG 2 cut(s) 334, 348
FokI GGATG 1 cut(s) 182
FriOI GRGCYC 1 cut(s) 193
FspBI CTAG 1 cut(s) 152
GsuI CTGGAG 1 cut(s) 221
HaeIII GGCC 1 cut(s) 49
Hin1II CATG 2 cut(s) 338, 352
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 3 cut(s) 9, 127, 311
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 2 cut(s) 136, 376
Hpy188I TCNGA 4 cut(s) 8, 106, 126, 299
Hpy188III TCNNGA 2 cut(s) 13, 200
Hpy8I GTNNAC 2 cut(s) 136, 376
HpyAV CCTTC 4 cut(s) 153, 228, 280, 355
HpyCH4III ACNGT 2 cut(s) 249, 280
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 3 cut(s) 115, 173, 271
HpyF10VI GCNNNNNNNGC 2 cut(s) 179, 188
HpyF3I CTNAG 2 cut(s) 53, 129
HpySE526I ACGT 1 cut(s) 36
Hsp92II CATG 2 cut(s) 338, 352
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 3 cut(s) 106, 188, 202
LpnPI CCDG 7 cut(s) 31, 95, 116, 159, 185, 272, 364
LweI GCATC 1 cut(s) 160
MaeI CTAG 1 cut(s) 152
MaeII ACGT 1 cut(s) 36
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 2 cut(s) 28, 350
MhlI GDGCHC 1 cut(s) 193
MlyI GAGTC 2 cut(s) 18, 121
MmeI TCCRAC 2 cut(s) 144, 166
MnlI CCTC 4 cut(s) 50, 60, 64, 160
MwoI GCNNNNNNNGC 2 cut(s) 179, 188
NdeII GATC 1 cut(s) 3
NlaIII CATG 2 cut(s) 338, 352
NmeAIII GCCGAG 1 cut(s) 172
PaeR7I CTCGAG 1 cut(s) 192
PceI AGGCCT 1 cut(s) 49
PfeI GAWTC 1 cut(s) 311
PleI GAGTC 2 cut(s) 17, 121
PpsI GAGTC 2 cut(s) 17, 121
Psp124BI GAGCTC 1 cut(s) 193
PspXI VCTCGAGB 1 cut(s) 192
RsaI GTAC 3 cut(s) 29, 119, 347
RsaNI GTAC 3 cut(s) 28, 118, 346
SacI GAGCTC 1 cut(s) 193
Sau3AI GATC 1 cut(s) 3
ScaI AGTACT 1 cut(s) 29
SchI GAGTC 2 cut(s) 18, 121
SduI GDGCHC 1 cut(s) 193
SfaNI GCATC 1 cut(s) 160
Sfr274I CTCGAG 1 cut(s) 192
SlaI CTCGAG 1 cut(s) 192
SmlI CTYRAG 1 cut(s) 192
SmoI CTYRAG 1 cut(s) 192
SseBI AGGCCT 1 cut(s) 49
SspMI CTAG 1 cut(s) 152
SstI GAGCTC 1 cut(s) 193
StuI AGGCCT 1 cut(s) 49
TaaI ACNGT 2 cut(s) 249, 280
TaiI ACGT 1 cut(s) 39
TaqI TCGA 2 cut(s) 42, 193
TatI WGTACW 3 cut(s) 27, 117, 345
TfiI GAWTC 1 cut(s) 311
TscAI CASTG 1 cut(s) 334
TspDTI ATGAA 3 cut(s) 35, 303, 351
TspRI CASTG 1 cut(s) 334
XhoI CTCGAG 1 cut(s) 192
XspI CTAG 1 cut(s) 152
ZrmI AGTACT 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.