Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000352.1

Orthogroup ID

OG0004024

Physical Location & Seq

Genomic Coordinates Forward (+)

1641 .. 3648

Gene Structure 2008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000352.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ctggaagaccaaaggtcaagccctattctttcttccgacgccgcccttttcatctttccgatctccgcctctctcagactagcttggtatagacttacagatttgggctggactttggtgtttatagctgcgatctttctagataagatgcacttctggaagttcatgcaactggtcgaggagaaaaagaggagagctttggagaagaaagaagcccctttgaaatgggagcagaaactagaagctgctgccaaggcaaaagctgatgctgaagccaaagagaggaaattgaaatcttcgaagcacaagagaaggtctgtctcagactccgattcagatagcgacgccaacggcactgatggtaggagaaaatcaagtaaaagagctcacaagaagcacaagaaagaccctcactcggactcgagtgacaacgaaaagaagaaggaaaagagatccaggcggaagccaaagagatattcctcagtgtcaagtgatgacagcagtgatggatatgagagtggctatgaaggagataagaagaggaagaagcgaagccacaaaaggcacaggggtcatgattctagatcagaatctggtgcttctgattcttcaagtgatgacaaggatgagagagtcaagagaagtcatgtgaagtaccacaggcgccataggagggcagattctgatctttctgattctagtgatgatgatcggagaagaatcagaagaagtcatgcaaagcaccctaaacaccaccggcagttgaaatctgtttcttctgattcttctagttatgaggatggtgagattagaaggaaaagtcgtgcaaagcaccataaatgtcataggcgaccaaatagtgttgattcatggtcatcggagtcagattcctatatgcgtgacagaagaagcagatctttagggaagtcatcagatgacaaccgtgatgaggcaagtaaacatttgaaggacaagaaaaatggccacctccatcatcttagacatggtcacaatcattactcaggagaggagaaagatcaccatcatcgggattcagttaagccccatggaaagcacatcaaagaccacagtagaaatggaactgatgacattaatgatggtcctgatgatcggaatgtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

380

Amino Acids

44.25

Weight (kDa)

9.96

Isoelectric Point (pI)

76.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01100 AT2G01100 AT2G01100
fragaria_vesca	FvH4_4g26261 FvH4_4g26261 FvH4_4g26261 FvH4_4g26263
malus_domestica	MD13G1031200.v1.1 MD16G1033400.v1.1
prunus_persica	Prupe.1G320900_v2.0.a1 Prupe.1G320900_v2.0.a1 Prupe.1G320900_v2.0.a1
pyrus_communis	pycom13g02730 pycom16g02800
rosa_chinensis	RchiOBHm_Chr2g0167881 RchiOBHm_Chr2g0167891 RchiOBHm_Chr4g0433871
rosa_laevigata	RLG00000006721 RLG00000011334 RLG00000017078
rosa_multiflora	Rmu_sc0000352.1_g000002
rosa_roxburghii	Rroxscaffold_5G00375270
rosa_rugosa	Rorug04G0272000 Rorug04G0272000 Rorug04G0272000
rosa_samantha	Rh2BG014400 Rh4AG326700 Rh4DG330900 Rh5DG507000 Rh6AG509600 Rh7BG051000 Rh7CG171900
rosa_wichuraiana	Rw4G028320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	663
AciI	CCGC	3 cut(s)	42, 66, 460
AclWI	GGATC	1 cut(s)	447
AcoI	YGGCCR	1 cut(s)	982
AcuI	CTGAAG	1 cut(s)	291
AcyI	GRCGYC	3 cut(s)	39, 345, 664
AfaI	GTAC	1 cut(s)	656
AfiI	CCNNNNNNNGG	5 cut(s)	282, 415, 673, 949, 1048
AgsI	TTSAA	5 cut(s)	223, 292, 612, 766, 967
AhdI	GACNNNNNGTC	1 cut(s)	13
AjnI	CCWGG	1 cut(s)	455
AjuI	GAANNNNNNNTTGG	2 cut(s)	460, 492
AluBI	AGCT	6 cut(s)	83, 128, 197, 245, 263, 386
AluI	AGCT	6 cut(s)	83, 128, 197, 245, 263, 386
Alw21I	GWGCWC	1 cut(s)	388
Alw26I	GTCTC	1 cut(s)	325
AlwI	GGATC	1 cut(s)	447
AlwNI	CAGNNNCTG	2 cut(s)	593, 683
Ama87I	CYCGRG	1 cut(s)	421
AoxI	GGCC	1 cut(s)	982
ApeKI	GCWGC	3 cut(s)	128, 245, 248
AseI	ATTAAT	1 cut(s)	1113
AspLEI	GCGC	1 cut(s)	666
AspS9I	GGNCC	1 cut(s)	1121
AsuHPI	GGTGA	2 cut(s)	815, 1031
AsuII	TTCGAA	1 cut(s)	299
AvaI	CYCGRG	1 cut(s)	421
AvaII	GGWCC	1 cut(s)	1121
BalI	TGGCCA	1 cut(s)	984
BanI	GGYRCC	1 cut(s)	663
BanII	GRGCYC	1 cut(s)	388
BbsI	GAAGAC	1 cut(s)	12
Bbv12I	GWGCWC	1 cut(s)	388
BbvI	GCAGC	3 cut(s)	115, 232, 235
BccI	CCATC	6 cut(s)	353, 500, 794, 999, 1050, 1112
BceAI	ACGGC	1 cut(s)	367
BciT130I	CCWGG	1 cut(s)	457
BcoDI	GTCTC	1 cut(s)	325
BfaI	CTAG	6 cut(s)	80, 140, 239, 582, 699, 789
BfoI	RGCGCY	1 cut(s)	667
BglII	AGATCT	1 cut(s)	914
BisI	GCNGC	4 cut(s)	42, 129, 246, 249
BlsI	GCNGC	4 cut(s)	43, 130, 247, 250
Bme1390I	CCNGG	1 cut(s)	457
Bme18I	GGWCC	1 cut(s)	1121
BmeRI	GACNNNNNGTC	1 cut(s)	13
BmeT110I	CYCGRG	1 cut(s)	421
BmgT120I	GGNCC	1 cut(s)	1121
BmiI	GGNNCC	1 cut(s)	665
BmrFI	CCNGG	1 cut(s)	457
BmsI	GCATC	2 cut(s)	138, 256
BpiI	GAAGAC	1 cut(s)	12
Bpu14I	TTCGAA	1 cut(s)	299
BsaBI	GATNNNNATC	4 cut(s)	589, 684, 708, 1041
BsaHI	GRCGYC	3 cut(s)	39, 345, 664
BsaJI	CCNNGG	2 cut(s)	252, 1066
Bsc4I	CCNNNNNNNGG	5 cut(s)	282, 415, 673, 949, 1048
Bse118I	RCCGGY	1 cut(s)	756
Bse1I	ACTGG	1 cut(s)	177
Bse8I	GATNNNNATC	4 cut(s)	589, 684, 708, 1041
BseBI	CCWGG	1 cut(s)	457
BseDI	CCNNGG	2 cut(s)	252, 1066
BseGI	GGATG	2 cut(s)	631, 805
BseJI	GATNNNNATC	4 cut(s)	589, 684, 708, 1041
BseLI	CCNNNNNNNGG	5 cut(s)	282, 415, 673, 949, 1048
BseMII	CTCAG	4 cut(s)	88, 336, 495, 1035
BseNI	ACTGG	1 cut(s)	177
BseRI	GAGGAG	3 cut(s)	194, 205, 1043
BseXI	GCAGC	3 cut(s)	115, 232, 235
BshFI	GGCC	1 cut(s)	984
BshNI	GGYRCC	1 cut(s)	663
BsiHKAI	GWGCWC	1 cut(s)	388
BsiHKCI	CYCGRG	1 cut(s)	421
BsiSI	CCGG	1 cut(s)	757
BslI	CCNNNNNNNGG	5 cut(s)	282, 415, 673, 949, 1048
BsmAI	GTCTC	1 cut(s)	325
BsnI	GGCC	1 cut(s)	984
BsoBI	CYCGRG	1 cut(s)	421
Bsp119I	TTCGAA	1 cut(s)	299
Bsp1286I	GDGCHC	1 cut(s)	388
Bsp143I	GATC	9 cut(s)	60, 132, 452, 584, 685, 709, 914, 1036, 1129
Bsp19I	CCATGG	1 cut(s)	1066
BspACI	CCGC	3 cut(s)	42, 66, 460
BspANI	GGCC	1 cut(s)	984
BspCNI	CTCAG	4 cut(s)	87, 335, 494, 1034
BspHI	TCATGA	1 cut(s)	574
BspLI	GGNNCC	1 cut(s)	665
BspPI	GGATC	1 cut(s)	447
BspT104I	TTCGAA	1 cut(s)	299
BspT107I	GGYRCC	1 cut(s)	663
BsrFI	RCCGGY	1 cut(s)	756
BsrI	ACTGG	1 cut(s)	177
BssAI	RCCGGY	1 cut(s)	756
BssECI	CCNNGG	2 cut(s)	252, 1066
BssMI	GATC	9 cut(s)	60, 132, 452, 584, 685, 709, 914, 1036, 1129
BssNI	GRCGYC	3 cut(s)	39, 345, 664
BssT1I	CCWWGG	2 cut(s)	252, 1066
Bst2UI	CCWGG	1 cut(s)	457
Bst4CI	ACNGT	2 cut(s)	944, 1091
Bst6I	CTCTTC	1 cut(s)	533
BstACI	GRCGYC	3 cut(s)	39, 345, 664
BstBI	TTCGAA	1 cut(s)	299
BstDEI	CTNAG	5 cut(s)	74, 322, 481, 998, 1021
BstDSI	CCRYGG	1 cut(s)	1066
BstF5I	GGATG	2 cut(s)	631, 805
BstH2I	RGCGCY	1 cut(s)	667
BstHHI	GCGC	1 cut(s)	666
BstKTI	GATC	9 cut(s)	63, 135, 455, 587, 688, 712, 917, 1039, 1132
BstMAI	GTCTC	1 cut(s)	325
BstMBI	GATC	9 cut(s)	60, 132, 452, 584, 685, 709, 914, 1036, 1129
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNI	CCWGG	1 cut(s)	457
BstSCI	CCNGG	1 cut(s)	455
BstV1I	GCAGC	3 cut(s)	115, 232, 235
BstV2I	GAAGAC	1 cut(s)	12
BstX2I	RGATCY	2 cut(s)	452, 914
BstYI	RGATCY	2 cut(s)	452, 914
BsuRI	GGCC	1 cut(s)	984
BtgI	CCRYGG	1 cut(s)	1066
BtsCI	GGATG	2 cut(s)	631, 805
BtsI	GCAGTG	1 cut(s)	508
BtsIMutI	CAGTG	3 cut(s)	354, 489, 508
CaiI	CAGNNNCTG	2 cut(s)	593, 683
CciI	TCATGA	1 cut(s)	574
CfoI	GCGC	1 cut(s)	666
Cfr10I	RCCGGY	1 cut(s)	756
Cfr13I	GGNCC	1 cut(s)	1121
CseI	GACGC	2 cut(s)	47, 353
Csp6I	GTAC	1 cut(s)	655
CviAII	CATG	7 cut(s)	166, 575, 647, 734, 870, 1004, 1067
CviQI	GTAC	1 cut(s)	655
DdeI	CTNAG	5 cut(s)	74, 322, 481, 998, 1021
DinI	GGCGCC	1 cut(s)	665
DpnI	GATC	9 cut(s)	62, 134, 454, 586, 687, 711, 916, 1038, 1131
DpnII	GATC	9 cut(s)	60, 132, 452, 584, 685, 709, 914, 1036, 1129
DriI	GACNNNNNGTC	1 cut(s)	13
EaeI	YGGCCR	1 cut(s)	982
Eam1104I	CTCTTC	1 cut(s)	533
Eam1105I	GACNNNNNGTC	1 cut(s)	13
EarI	CTCTTC	1 cut(s)	533
EciI	GGCGGA	2 cut(s)	55, 475
Ecl136II	GAGCTC	1 cut(s)	386
Eco130I	CCWWGG	2 cut(s)	252, 1066
Eco24I	GRGCYC	1 cut(s)	388
Eco47I	GGWCC	1 cut(s)	1121
Eco53kI	GAGCTC	1 cut(s)	386
Eco57I	CTGAAG	1 cut(s)	291
Eco88I	CYCGRG	1 cut(s)	421
EcoICRI	GAGCTC	1 cut(s)	386
EcoRII	CCWGG	1 cut(s)	455
EcoT14I	CCWWGG	2 cut(s)	252, 1066
EcoT38I	GRGCYC	1 cut(s)	388
EgeI	GGCGCC	1 cut(s)	665
EheI	GGCGCC	1 cut(s)	665
ErhI	CCWWGG	2 cut(s)	252, 1066
FaeI	CATG	7 cut(s)	169, 578, 650, 737, 873, 1007, 1070
FalI	AAGNNNNNCTT	4 cut(s)	137, 169, 901, 933
FatI	CATG	7 cut(s)	165, 574, 646, 733, 869, 1003, 1066
Fnu4HI	GCNGC	4 cut(s)	42, 129, 246, 249
FokI	GGATG	2 cut(s)	638, 812
FriOI	GRGCYC	1 cut(s)	388
Fsp4HI	GCNGC	4 cut(s)	42, 129, 246, 249
FspBI	CTAG	6 cut(s)	80, 140, 239, 582, 699, 789
GlaI	GCGC	1 cut(s)	665
GluI	GCNGC	4 cut(s)	42, 129, 246, 249
HaeII	RGCGCY	1 cut(s)	667
HaeIII	GGCC	1 cut(s)	984
HapII	CCGG	1 cut(s)	757
HgaI	GACGC	2 cut(s)	47, 353
HhaI	GCGC	1 cut(s)	666
Hin1I	GRCGYC	3 cut(s)	39, 345, 664
Hin1II	CATG	7 cut(s)	169, 578, 650, 737, 873, 1007, 1070
Hin6I	GCGC	1 cut(s)	664
HinP1I	GCGC	1 cut(s)	664
HpaII	CCGG	1 cut(s)	757
HphI	GGTGA	2 cut(s)	815, 1031
Hpy166II	GTNNAC	1 cut(s)	959
Hpy188III	TCNNGA	8 cut(s)	140, 157, 575, 582, 637, 1023, 1049, 1124
Hpy8I	GTNNAC	1 cut(s)	959
Hpy99I	CGWCG	2 cut(s)	41, 347
HpyAV	CCTTC	5 cut(s)	306, 436, 521, 807, 961
HpyCH4III	ACNGT	2 cut(s)	944, 1091
HpyCH4V	TGCA	4 cut(s)	151, 169, 737, 827
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	5 cut(s)	74, 322, 481, 998, 1021
Hsp92I	GRCGYC	3 cut(s)	39, 345, 664
Hsp92II	CATG	7 cut(s)	169, 578, 650, 737, 873, 1007, 1070
HspAI	GCGC	1 cut(s)	664
KasI	GGCGCC	1 cut(s)	663
Kzo9I	GATC	9 cut(s)	60, 132, 452, 584, 685, 709, 914, 1036, 1129
LmnI	GCTCC	1 cut(s)	229
Lsp1109I	GCAGC	3 cut(s)	115, 232, 235
LweI	GCATC	2 cut(s)	138, 256
MaeI	CTAG	6 cut(s)	80, 140, 239, 582, 699, 789
MaeIII	GTNAC	3 cut(s)	425, 899, 1007
MalI	GATC	9 cut(s)	62, 134, 454, 586, 687, 711, 916, 1038, 1131
MboI	GATC	9 cut(s)	60, 132, 452, 584, 685, 709, 914, 1036, 1129
MflI	RGATCY	2 cut(s)	452, 914
MhlI	GDGCHC	1 cut(s)	388
MlsI	TGGCCA	1 cut(s)	984
MluCI	AATT	1 cut(s)	287
MluNI	TGGCCA	1 cut(s)	984
Mly113I	GGCGCC	1 cut(s)	664
MlyI	GAGTC	4 cut(s)	320, 413, 642, 890
MmeI	TCCRAC	1 cut(s)	60
Mox20I	TGGCCA	1 cut(s)	984
MscI	TGGCCA	1 cut(s)	984
MseI	TTAA	2 cut(s)	1059, 1113
Msp20I	TGGCCA	1 cut(s)	984
MspI	CCGG	1 cut(s)	757
MspR9I	CCNGG	1 cut(s)	457
MvaI	CCWGG	1 cut(s)	457
MwoI	GCNNNNNNNGC	1 cut(s)	254
NarI	GGCGCC	1 cut(s)	664
NcoI	CCATGG	1 cut(s)	1066
NdeII	GATC	9 cut(s)	60, 132, 452, 584, 685, 709, 914, 1036, 1129
NlaIII	CATG	7 cut(s)	169, 578, 650, 737, 873, 1007, 1070
NlaIV	GGNNCC	1 cut(s)	665
NmuCI	GTSAC	3 cut(s)	425, 899, 1007
NspV	TTCGAA	1 cut(s)	299
PaeR7I	CTCGAG	1 cut(s)	421
PagI	TCATGA	1 cut(s)	574
PflFI	GACNNNGTC	1 cut(s)	1005
PkrI	GCNGC	4 cut(s)	43, 130, 247, 250
PleI	GAGTC	4 cut(s)	320, 413, 641, 889
PluTI	GGCGCC	1 cut(s)	667
PpsI	GAGTC	4 cut(s)	320, 413, 641, 889
PshBI	ATTAAT	1 cut(s)	1113
Psp124BI	GAGCTC	1 cut(s)	388
Psp6I	CCWGG	1 cut(s)	455
PspGI	CCWGG	1 cut(s)	455
PspN4I	GGNNCC	1 cut(s)	665
PspPI	GGNCC	1 cut(s)	1121
PspXI	VCTCGAGB	1 cut(s)	421
PstNI	CAGNNNCTG	2 cut(s)	593, 683
PsuI	RGATCY	2 cut(s)	452, 914
PsyI	GACNNNGTC	1 cut(s)	1005
RsaI	GTAC	1 cut(s)	656
RsaNI	GTAC	1 cut(s)	655
SacI	GAGCTC	1 cut(s)	388
SaqAI	TTAA	2 cut(s)	1059, 1113
SatI	GCNGC	4 cut(s)	42, 129, 246, 249
Sau3AI	GATC	9 cut(s)	60, 132, 452, 584, 685, 709, 914, 1036, 1129
Sau96I	GGNCC	1 cut(s)	1121
SchI	GAGTC	4 cut(s)	320, 413, 642, 890
ScrFI	CCNGG	1 cut(s)	457
SduI	GDGCHC	1 cut(s)	388
SetI	ASST	9 cut(s)	17, 85, 130, 199, 247, 265, 317, 388, 990
SfaNI	GCATC	2 cut(s)	138, 256
SfoI	GGCGCC	1 cut(s)	665
Sfr274I	CTCGAG	1 cut(s)	421
SfuI	TTCGAA	1 cut(s)	299
SinI	GGWCC	1 cut(s)	1121
SlaI	CTCGAG	1 cut(s)	421
SmlI	CTYRAG	1 cut(s)	421
SmoI	CTYRAG	1 cut(s)	421
Sse9I	AATT	1 cut(s)	287
SsiI	CCGC	3 cut(s)	42, 66, 460
SspDI	GGCGCC	1 cut(s)	663
SspMI	CTAG	6 cut(s)	80, 140, 239, 582, 699, 789
SstI	GAGCTC	1 cut(s)	388
StyD4I	CCNGG	1 cut(s)	455
StyI	CCWWGG	2 cut(s)	252, 1066
TaaI	ACNGT	2 cut(s)	944, 1091
TaqI	TCGA	3 cut(s)	177, 299, 422
TasI	AATT	1 cut(s)	287
TauI	GCSGC	1 cut(s)	44
Tru1I	TTAA	2 cut(s)	1059, 1113
Tru9I	TTAA	2 cut(s)	1059, 1113
TscAI	CASTG	3 cut(s)	361, 489, 508
TseFI	GTSAC	3 cut(s)	425, 899, 1007
TseI	GCWGC	3 cut(s)	128, 245, 248
Tsp45I	GTSAC	3 cut(s)	425, 899, 1007
TspDTI	ATGAA	4 cut(s)	40, 154, 540, 858
TspRI	CASTG	3 cut(s)	361, 489, 508
Tth111I	GACNNNGTC	1 cut(s)	1005
VpaK11BI	GGWCC	1 cut(s)	1121
VspI	ATTAAT	1 cut(s)	1113
XbaI	TCTAGA	2 cut(s)	139, 581
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1094
XhoI	CTCGAG	1 cut(s)	421
XspI	CTAG	6 cut(s)	80, 140, 239, 582, 699, 789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.