Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004024

Physical Location & Seq

Genomic Coordinates Reverse (-)

9926213 .. 9928384

Gene Structure 2172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006721

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGAAAAGGAAAAATAAAAAGACGTTTCTGGACGGTCAAAAGTCGAGCCCTATTTTTTCTTCGGACGCCGCCCTCTTCATCTTTCCGATCTCGGCCTCTCTCAGAGTAGCTTGGTATAGACTTACAGATTTGGGCTGGACTTTGGTGTTTATAGCTGTGATCTTTCTAGATAAGATGCACTTCTGGAAGTTCATGCAACTGGTTGAGGAGAAAAAGAGGAGAGCTTTGGAGAAGAAAGAAGCCCCTTTGAAATGGGAGCAGAAACTAGAAGCTGCTGCCAAGGCAAAAGCTGATGCTGAAGCCAAAGAGAGGAAATTGAAATCTTCGAAGCACAAGAGAAGGTCTGTCTCAGACTCCGATTCAGATAGCGACGCCAACGGCACTGATGGTAGGAGAAAATCAAGTAAAAGAGCTCACAAGAAGCACAAGAAAGACCCTCACTTGGACTCGAGTGACAACGAAAAGAAGAAGGAAAAGAGATCCAGGCGGAAGCTAAAGAGATATTCCTCAGTGTCAAGTGATGACAGTAGTGATGGATATGAGAGTGGCTATGAAGGAGATAAGAAGAGGAAGAAGCAAAGCCACAAAAGGCACAGGGGTCATGATTCTAGATCAGAATCTGGTGCTTCTGATTCTTCAAGTGATGACAAGGATGAGAGAGTCAAGAGAAGTCATGTGAAGTACCACAGGCGCCATAGGAGGGCAGATTCTGATCTTTCTGATTCTAGTGATGATGATCGGAGAAGAATCAGAAGAAGTCATGCAAAGCACCCTAAACACCACCGGCAGTTGAAGTCTGTTTTTTCTGATTCTTCTAGTTATGAGGATGGTGAGATTAGAAGGAAAAGTCGTGCAAAGCACCATAAATGTCATAGGCGACCAAATAGTGTTGATTCAAGGTCATCGGAGTCAGATTCCTATATGCGTGACAGAAGAAGCAGATCTTTAGGGAAGTCATCAGATGACAACCATGATGAGGCAGGTAAACATTTGAAGGACAAGAAAAATGGCCACCACCATCATCATAGACATGGTCACAATCATTACTCAGGAGAGGAGAAAGATCACCATTATCGGGATTCAGTTAAGCCCCATGGAAAGCACATCAAAGACCTCTGTAGAAATGGAACTGATGACATTAATGATGGTCCTGATAATCAGATTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

390

Amino Acids

45.39

Weight (kDa)

9.99

Isoelectric Point (pI)

74.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01100 AT2G01100 AT2G01100
fragaria_vesca	FvH4_4g26261 FvH4_4g26261 FvH4_4g26261 FvH4_4g26263
malus_domestica	MD13G1031200.v1.1 MD16G1033400.v1.1
prunus_persica	Prupe.1G320900_v2.0.a1 Prupe.1G320900_v2.0.a1 Prupe.1G320900_v2.0.a1
pyrus_communis	pycom13g02730 pycom16g02800
rosa_chinensis	RchiOBHm_Chr2g0167881 RchiOBHm_Chr2g0167891 RchiOBHm_Chr4g0433871
rosa_laevigata	RLG00000006721 RLG00000011334 RLG00000017078
rosa_multiflora	Rmu_sc0000352.1_g000002
rosa_roxburghii	Rroxscaffold_5G00375270
rosa_rugosa	Rorug04G0272000 Rorug04G0272000 Rorug04G0272000
rosa_samantha	Rh2BG014400 Rh4AG326700 Rh4DG330900 Rh5DG507000 Rh6AG509600 Rh7BG051000 Rh7CG171900
rosa_wichuraiana	Rw4G028320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	971
AccB1I	GGYRCC	1 cut(s)	690
AciI	CCGC	2 cut(s)	69, 487
AclWI	GGATC	1 cut(s)	474
AcoI	YGGCCR	1 cut(s)	1009
AcuI	CTGAAG	1 cut(s)	318
AcyI	GRCGYC	3 cut(s)	66, 372, 691
AfaI	GTAC	1 cut(s)	683
AfiI	CCNNNNNNNGG	5 cut(s)	309, 442, 700, 976, 1075
AgsI	TTSAA	6 cut(s)	250, 319, 639, 793, 897, 994
AjnI	CCWGG	1 cut(s)	482
AluBI	AGCT	7 cut(s)	110, 155, 224, 272, 290, 413, 493
AluI	AGCT	7 cut(s)	110, 155, 224, 272, 290, 413, 493
Alw21I	GWGCWC	1 cut(s)	415
Alw26I	GTCTC	1 cut(s)	352
AlwI	GGATC	1 cut(s)	474
AlwNI	CAGNNNCTG	2 cut(s)	620, 710
Ama87I	CYCGRG	1 cut(s)	448
AoxI	GGCC	2 cut(s)	93, 1009
ApeKI	GCWGC	2 cut(s)	272, 275
AseI	ATTAAT	1 cut(s)	1140
AspLEI	GCGC	1 cut(s)	693
AspS9I	GGNCC	1 cut(s)	1148
AsuHPI	GGTGA	2 cut(s)	842, 1058
AsuII	TTCGAA	1 cut(s)	326
AvaI	CYCGRG	1 cut(s)	448
AvaII	GGWCC	1 cut(s)	1148
BalI	TGGCCA	1 cut(s)	1011
BanI	GGYRCC	1 cut(s)	690
BanII	GRGCYC	2 cut(s)	50, 415
Bbv12I	GWGCWC	1 cut(s)	415
BbvI	GCAGC	2 cut(s)	259, 262
BccI	CCATC	5 cut(s)	380, 527, 821, 1026, 1139
BceAI	ACGGC	1 cut(s)	394
BciT130I	CCWGG	1 cut(s)	484
BcoDI	GTCTC	1 cut(s)	352
BfaI	CTAG	5 cut(s)	167, 266, 609, 726, 816
BfmI	CTRYAG	1 cut(s)	1117
BfoI	RGCGCY	1 cut(s)	694
BfuAI	ACCTGC	1 cut(s)	971
BglII	AGATCT	1 cut(s)	941
BisI	GCNGC	3 cut(s)	69, 273, 276
BlsI	GCNGC	3 cut(s)	70, 274, 277
Bme1390I	CCNGG	1 cut(s)	484
Bme18I	GGWCC	1 cut(s)	1148
BmeT110I	CYCGRG	1 cut(s)	448
BmgT120I	GGNCC	1 cut(s)	1148
BmiI	GGNNCC	1 cut(s)	692
BmrFI	CCNGG	1 cut(s)	484
BmsI	GCATC	2 cut(s)	165, 283
Bpu14I	TTCGAA	1 cut(s)	326
BsaBI	GATNNNNATC	3 cut(s)	616, 711, 735
BsaHI	GRCGYC	3 cut(s)	66, 372, 691
BsaJI	CCNNGG	2 cut(s)	279, 1093
Bsc4I	CCNNNNNNNGG	5 cut(s)	309, 442, 700, 976, 1075
Bse118I	RCCGGY	1 cut(s)	783
Bse1I	ACTGG	1 cut(s)	204
Bse8I	GATNNNNATC	3 cut(s)	616, 711, 735
BseBI	CCWGG	1 cut(s)	484
BseDI	CCNNGG	2 cut(s)	279, 1093
BseGI	GGATG	2 cut(s)	658, 832
BseJI	GATNNNNATC	3 cut(s)	616, 711, 735
BseLI	CCNNNNNNNGG	5 cut(s)	309, 442, 700, 976, 1075
BseMII	CTCAG	4 cut(s)	115, 363, 522, 1062
BseNI	ACTGG	1 cut(s)	204
BseRI	GAGGAG	3 cut(s)	221, 232, 1070
BseXI	GCAGC	2 cut(s)	259, 262
BshFI	GGCC	2 cut(s)	95, 1011
BshNI	GGYRCC	1 cut(s)	690
BsiHKAI	GWGCWC	1 cut(s)	415
BsiHKCI	CYCGRG	1 cut(s)	448
BsiSI	CCGG	1 cut(s)	784
BslI	CCNNNNNNNGG	5 cut(s)	309, 442, 700, 976, 1075
BsmAI	GTCTC	1 cut(s)	352
BsnI	GGCC	2 cut(s)	95, 1011
BsoBI	CYCGRG	1 cut(s)	448
Bsp119I	TTCGAA	1 cut(s)	326
Bsp1286I	GDGCHC	2 cut(s)	50, 415
Bsp143I	GATC	8 cut(s)	87, 159, 479, 611, 712, 736, 941, 1063
Bsp19I	CCATGG	1 cut(s)	1093
BspACI	CCGC	2 cut(s)	69, 487
BspANI	GGCC	2 cut(s)	95, 1011
BspCNI	CTCAG	4 cut(s)	114, 362, 521, 1061
BspHI	TCATGA	1 cut(s)	601
BspLI	GGNNCC	1 cut(s)	692
BspMI	ACCTGC	1 cut(s)	971
BspPI	GGATC	1 cut(s)	474
BspT104I	TTCGAA	1 cut(s)	326
BspT107I	GGYRCC	1 cut(s)	690
BsrFI	RCCGGY	1 cut(s)	783
BsrI	ACTGG	1 cut(s)	204
BssAI	RCCGGY	1 cut(s)	783
BssECI	CCNNGG	2 cut(s)	279, 1093
BssMI	GATC	8 cut(s)	87, 159, 479, 611, 712, 736, 941, 1063
BssNI	GRCGYC	3 cut(s)	66, 372, 691
BssT1I	CCWWGG	2 cut(s)	279, 1093
Bst2UI	CCWGG	1 cut(s)	484
Bst4CI	ACNGT	2 cut(s)	35, 527
Bst6I	CTCTTC	2 cut(s)	80, 560
BstACI	GRCGYC	3 cut(s)	66, 372, 691
BstBI	TTCGAA	1 cut(s)	326
BstDEI	CTNAG	4 cut(s)	101, 349, 508, 1048
BstDSI	CCRYGG	1 cut(s)	1093
BstF5I	GGATG	2 cut(s)	658, 832
BstH2I	RGCGCY	1 cut(s)	694
BstHHI	GCGC	1 cut(s)	693
BstKTI	GATC	8 cut(s)	90, 162, 482, 614, 715, 739, 944, 1066
BstMAI	GTCTC	1 cut(s)	352
BstMBI	GATC	8 cut(s)	87, 159, 479, 611, 712, 736, 941, 1063
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstNI	CCWGG	1 cut(s)	484
BstSCI	CCNGG	1 cut(s)	482
BstSFI	CTRYAG	1 cut(s)	1117
BstV1I	GCAGC	2 cut(s)	259, 262
BstX2I	RGATCY	2 cut(s)	479, 941
BstYI	RGATCY	2 cut(s)	479, 941
BsuRI	GGCC	2 cut(s)	95, 1011
BtgI	CCRYGG	1 cut(s)	1093
BtsCI	GGATG	2 cut(s)	658, 832
BtsIMutI	CAGTG	2 cut(s)	381, 516
BveI	ACCTGC	1 cut(s)	971
CaiI	CAGNNNCTG	2 cut(s)	620, 710
CciI	TCATGA	1 cut(s)	601
CfoI	GCGC	1 cut(s)	693
Cfr10I	RCCGGY	1 cut(s)	783
Cfr13I	GGNCC	1 cut(s)	1148
CseI	GACGC	2 cut(s)	74, 380
Csp6I	GTAC	1 cut(s)	682
CviAII	CATG	7 cut(s)	193, 602, 674, 761, 971, 1031, 1094
CviQI	GTAC	1 cut(s)	682
DdeI	CTNAG	4 cut(s)	101, 349, 508, 1048
DinI	GGCGCC	1 cut(s)	692
DpnI	GATC	8 cut(s)	89, 161, 481, 613, 714, 738, 943, 1065
DpnII	GATC	8 cut(s)	87, 159, 479, 611, 712, 736, 941, 1063
EaeI	YGGCCR	1 cut(s)	1009
Eam1104I	CTCTTC	2 cut(s)	80, 560
EarI	CTCTTC	2 cut(s)	80, 560
EciI	GGCGGA	1 cut(s)	502
Ecl136II	GAGCTC	1 cut(s)	413
Eco130I	CCWWGG	2 cut(s)	279, 1093
Eco24I	GRGCYC	2 cut(s)	50, 415
Eco47I	GGWCC	1 cut(s)	1148
Eco53kI	GAGCTC	1 cut(s)	413
Eco57I	CTGAAG	1 cut(s)	318
Eco88I	CYCGRG	1 cut(s)	448
EcoICRI	GAGCTC	1 cut(s)	413
EcoRII	CCWGG	1 cut(s)	482
EcoT14I	CCWWGG	2 cut(s)	279, 1093
EcoT38I	GRGCYC	2 cut(s)	50, 415
EgeI	GGCGCC	1 cut(s)	692
EheI	GGCGCC	1 cut(s)	692
ErhI	CCWWGG	2 cut(s)	279, 1093
FaeI	CATG	7 cut(s)	196, 605, 677, 764, 974, 1034, 1097
FalI	AAGNNNNNCTT	4 cut(s)	164, 196, 928, 960
FatI	CATG	7 cut(s)	192, 601, 673, 760, 970, 1030, 1093
Fnu4HI	GCNGC	3 cut(s)	69, 273, 276
FokI	GGATG	2 cut(s)	665, 839
FriOI	GRGCYC	2 cut(s)	50, 415
Fsp4HI	GCNGC	3 cut(s)	69, 273, 276
FspBI	CTAG	5 cut(s)	167, 266, 609, 726, 816
GlaI	GCGC	1 cut(s)	692
GluI	GCNGC	3 cut(s)	69, 273, 276
HaeII	RGCGCY	1 cut(s)	694
HaeIII	GGCC	2 cut(s)	95, 1011
HapII	CCGG	1 cut(s)	784
HgaI	GACGC	2 cut(s)	74, 380
HhaI	GCGC	1 cut(s)	693
Hin1I	GRCGYC	3 cut(s)	66, 372, 691
Hin1II	CATG	7 cut(s)	196, 605, 677, 764, 974, 1034, 1097
Hin6I	GCGC	1 cut(s)	691
HinP1I	GCGC	1 cut(s)	691
HpaII	CCGG	1 cut(s)	784
HphI	GGTGA	2 cut(s)	842, 1058
Hpy166II	GTNNAC	1 cut(s)	986
Hpy188III	TCNNGA	9 cut(s)	29, 167, 184, 602, 609, 664, 1050, 1076, 1151
Hpy8I	GTNNAC	1 cut(s)	986
Hpy99I	CGWCG	1 cut(s)	374
HpyAV	CCTTC	5 cut(s)	333, 463, 548, 834, 988
HpyCH4III	ACNGT	2 cut(s)	35, 527
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	4 cut(s)	178, 196, 764, 854
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpyF3I	CTNAG	4 cut(s)	101, 349, 508, 1048
HpySE526I	ACGT	1 cut(s)	23
Hsp92I	GRCGYC	3 cut(s)	66, 372, 691
Hsp92II	CATG	7 cut(s)	196, 605, 677, 764, 974, 1034, 1097
HspAI	GCGC	1 cut(s)	691
KasI	GGCGCC	1 cut(s)	690
Kzo9I	GATC	8 cut(s)	87, 159, 479, 611, 712, 736, 941, 1063
LmnI	GCTCC	1 cut(s)	256
Lsp1109I	GCAGC	2 cut(s)	259, 262
LweI	GCATC	2 cut(s)	165, 283
MaeI	CTAG	5 cut(s)	167, 266, 609, 726, 816
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	3 cut(s)	452, 926, 1034
MalI	GATC	8 cut(s)	89, 161, 481, 613, 714, 738, 943, 1065
MboI	GATC	8 cut(s)	87, 159, 479, 611, 712, 736, 941, 1063
MflI	RGATCY	2 cut(s)	479, 941
MhlI	GDGCHC	2 cut(s)	50, 415
MlsI	TGGCCA	1 cut(s)	1011
MluCI	AATT	1 cut(s)	314
MluNI	TGGCCA	1 cut(s)	1011
Mly113I	GGCGCC	1 cut(s)	691
MlyI	GAGTC	4 cut(s)	347, 440, 669, 917
Mox20I	TGGCCA	1 cut(s)	1011
MscI	TGGCCA	1 cut(s)	1011
MseI	TTAA	2 cut(s)	1086, 1140
MslI	CAYNNNNRTG	1 cut(s)	1029
Msp20I	TGGCCA	1 cut(s)	1011
MspI	CCGG	1 cut(s)	784
MspR9I	CCNGG	1 cut(s)	484
MvaI	CCWGG	1 cut(s)	484
MwoI	GCNNNNNNNGC	1 cut(s)	281
NarI	GGCGCC	1 cut(s)	691
NcoI	CCATGG	1 cut(s)	1093
NdeII	GATC	8 cut(s)	87, 159, 479, 611, 712, 736, 941, 1063
NlaIII	CATG	7 cut(s)	196, 605, 677, 764, 974, 1034, 1097
NlaIV	GGNNCC	1 cut(s)	692
NmeAIII	GCCGAG	1 cut(s)	71
NmuCI	GTSAC	3 cut(s)	452, 926, 1034
NspV	TTCGAA	1 cut(s)	326
PaeR7I	CTCGAG	1 cut(s)	448
PagI	TCATGA	1 cut(s)	601
PflFI	GACNNNGTC	1 cut(s)	1032
PkrI	GCNGC	3 cut(s)	70, 274, 277
PleI	GAGTC	4 cut(s)	347, 440, 668, 916
PluTI	GGCGCC	1 cut(s)	694
PpsI	GAGTC	4 cut(s)	347, 440, 668, 916
PshBI	ATTAAT	1 cut(s)	1140
Psp124BI	GAGCTC	1 cut(s)	415
Psp6I	CCWGG	1 cut(s)	482
PspGI	CCWGG	1 cut(s)	482
PspN4I	GGNNCC	1 cut(s)	692
PspPI	GGNCC	1 cut(s)	1148
PspXI	VCTCGAGB	1 cut(s)	448
PstNI	CAGNNNCTG	2 cut(s)	620, 710
PsuI	RGATCY	2 cut(s)	479, 941
PsyI	GACNNNGTC	1 cut(s)	1032
RsaI	GTAC	1 cut(s)	683
RsaNI	GTAC	1 cut(s)	682
RseI	CAYNNNNRTG	1 cut(s)	1029
SacI	GAGCTC	1 cut(s)	415
SaqAI	TTAA	2 cut(s)	1086, 1140
SatI	GCNGC	3 cut(s)	69, 273, 276
Sau3AI	GATC	8 cut(s)	87, 159, 479, 611, 712, 736, 941, 1063
Sau96I	GGNCC	1 cut(s)	1148
SchI	GAGTC	4 cut(s)	347, 440, 669, 917
ScrFI	CCNGG	1 cut(s)	484
SduI	GDGCHC	2 cut(s)	50, 415
SfaNI	GCATC	2 cut(s)	165, 283
SfcI	CTRYAG	1 cut(s)	1117
SfoI	GGCGCC	1 cut(s)	692
Sfr274I	CTCGAG	1 cut(s)	448
SfuI	TTCGAA	1 cut(s)	326
SinI	GGWCC	1 cut(s)	1148
SlaI	CTCGAG	1 cut(s)	448
SmiMI	CAYNNNNRTG	1 cut(s)	1029
SmlI	CTYRAG	1 cut(s)	448
SmoI	CTYRAG	1 cut(s)	448
Sse9I	AATT	1 cut(s)	314
SsiI	CCGC	2 cut(s)	69, 487
SspDI	GGCGCC	1 cut(s)	690
SspMI	CTAG	5 cut(s)	167, 266, 609, 726, 816
SstI	GAGCTC	1 cut(s)	415
StyD4I	CCNGG	1 cut(s)	482
StyI	CCWWGG	2 cut(s)	279, 1093
TaaI	ACNGT	2 cut(s)	35, 527
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	3 cut(s)	44, 326, 449
TasI	AATT	1 cut(s)	314
TauI	GCSGC	1 cut(s)	71
Tru1I	TTAA	2 cut(s)	1086, 1140
Tru9I	TTAA	2 cut(s)	1086, 1140
TscAI	CASTG	2 cut(s)	388, 516
TseFI	GTSAC	3 cut(s)	452, 926, 1034
TseI	GCWGC	2 cut(s)	272, 275
Tsp45I	GTSAC	3 cut(s)	452, 926, 1034
TspDTI	ATGAA	4 cut(s)	17, 67, 181, 567
TspRI	CASTG	2 cut(s)	388, 516
Tth111I	GACNNNGTC	1 cut(s)	1032
VpaK11BI	GGWCC	1 cut(s)	1148
VspI	ATTAAT	1 cut(s)	1140
XbaI	TCTAGA	2 cut(s)	166, 608
XhoI	CTCGAG	1 cut(s)	448
XspI	CTAG	5 cut(s)	167, 266, 609, 726, 816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.