Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004024

Physical Location & Seq

Genomic Coordinates Forward (+)

27726837 .. 27729016

Gene Structure 2180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g26261.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGCAACTGGTCGAGGAGAAAAAGAGGAGAGCTTTGGAGAAGAAAGAAGCCCCTTTGAAATGGGAGCAGAAACTAGAAGCTGCTGCCAAGGCAAAAGCTGATGCTGAAGCCAAAGCGAGGAAGTTGAAATCTTTGAAGCATAAGAGAAGGTCTGTGTCAGACTCTGATTCCGATAGCAGCATTGATGATAGGAGAAAATCAAGTAAAAGGAGTCACAAGAAGCACAAGAAACGCCCTCACTCAGACTCAAGTGACAGCGAAAAGAAAGAAAAGAGATCCAGAAGGAAGCCAAAGAGATATTCCTCGGGGGCCTCAAGTGGCGACGTCAGTGATGGATATGAGAGTGGCTATGAAGGAGATAAGAAGAGGAAGAAGCGAAGCCACAAAAGGCACAGGGTTTACGAATCCAGGTCAGAATCTGGTGTTTCTGGTTCTTCAAGTGATGAAAATGATGAGAGAGTCAAGAAAAGTCATGTGAGGCACCACAGGCGCCATAGGAGGGCAGGTTCTGATCTTTTGGATTTTAGTGATGATGAACAGAGAAAAATCAGAAGAAGTCATGCAAAGCACCCTAAACACCATCGACAATTGAAATCTGCTTCTGATTCTTCAAGTTGTGAGGACGGTGAGATTAGAAGGAAAGATCGTGTAAAGCACCATAAACGTCATAGGCGTTCAGATAGTGTTGATTCAAGGTCATCAGAGTCGGATTCTTATAGGCGTGACAGAAGGAGCAGATCTTTGGGGAAGTCATCGGATGACAACCATGATCAAGCAGGTAAACATATGAAGGACAAGAGAGATGGTCATCATCACCACCATCACAGACGTCATCACAACCATCGCTTAGAGGAGAAGGATAACTATCCTGAGGATTCAGTTAAGCCTAATGGAAAGCGCATCGAAGATCTTGGTAGAAATGGAGCTACTGACATTAATGATGCTCCTGATGATCAAAATGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

322

Amino Acids

37.5

Weight (kDa)

10.14

Isoelectric Point (pI)

85.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01100 AT2G01100 AT2G01100
fragaria_vesca	FvH4_4g26261 FvH4_4g26261 FvH4_4g26261 FvH4_4g26263
malus_domestica	MD13G1031200.v1.1 MD16G1033400.v1.1
prunus_persica	Prupe.1G320900_v2.0.a1 Prupe.1G320900_v2.0.a1 Prupe.1G320900_v2.0.a1
pyrus_communis	pycom13g02730 pycom16g02800
rosa_chinensis	RchiOBHm_Chr2g0167881 RchiOBHm_Chr2g0167891 RchiOBHm_Chr4g0433871
rosa_laevigata	RLG00000006721 RLG00000011334 RLG00000017078
rosa_multiflora	Rmu_sc0000352.1_g000002
rosa_roxburghii	Rroxscaffold_5G00375270
rosa_rugosa	Rorug04G0272000 Rorug04G0272000 Rorug04G0272000
rosa_samantha	Rh2BG014400 Rh4AG326700 Rh4DG330900 Rh5DG507000 Rh6AG509600 Rh7BG051000 Rh7CG171900
rosa_wichuraiana	Rw4G028320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	327, 832
Acc36I	ACCTGC	2 cut(s)	494, 767
AccB1I	GGYRCC	2 cut(s)	480, 489
AclWI	GGATC	1 cut(s)	270
AcuI	CTGAAG	1 cut(s)	126
AcyI	GRCGYC	3 cut(s)	324, 490, 829
AfiI	CCNNNNNNNGG	2 cut(s)	117, 499
AgsI	TTSAA	7 cut(s)	58, 127, 136, 438, 592, 612, 693
AjnI	CCWGG	1 cut(s)	407
AjuI	GAANNNNNNNTTGG	2 cut(s)	283, 315
AloI	GAACNNNNNNTCC	2 cut(s)	490, 522
AluBI	AGCT	4 cut(s)	32, 80, 98, 926
AluI	AGCT	4 cut(s)	32, 80, 98, 926
AlwI	GGATC	1 cut(s)	270
AlwNI	CAGNNNCTG	3 cut(s)	164, 419, 509
Ama87I	CYCGRG	1 cut(s)	304
AoxI	GGCC	1 cut(s)	309
ApeKI	GCWGC	3 cut(s)	80, 83, 177
AseI	ATTAAT	1 cut(s)	936
AspLEI	GCGC	2 cut(s)	492, 900
AspS9I	GGNCC	1 cut(s)	309
AsuHPI	GGTGA	2 cut(s)	638, 806
AvaI	CYCGRG	1 cut(s)	304
AxyI	CCTNAGG	1 cut(s)	870
BanI	GGYRCC	2 cut(s)	480, 489
BbvI	GCAGC	3 cut(s)	67, 70, 189
BccI	CCATC	5 cut(s)	326, 588, 797, 828, 849
BciT130I	CCWGG	1 cut(s)	409
BclI	TGATCA	2 cut(s)	769, 952
BfaI	CTAG	1 cut(s)	74
BfoI	RGCGCY	1 cut(s)	493
BfuAI	ACCTGC	2 cut(s)	494, 767
BglII	AGATCT	2 cut(s)	737, 907
BisI	GCNGC	3 cut(s)	81, 84, 178
BlsI	GCNGC	3 cut(s)	82, 85, 179
Bme1390I	CCNGG	1 cut(s)	409
BmeT110I	CYCGRG	1 cut(s)	304
BmgT120I	GGNCC	1 cut(s)	309
BmiI	GGNNCC	3 cut(s)	310, 482, 491
BmrFI	CCNGG	1 cut(s)	409
BmsI	GCATC	3 cut(s)	91, 909, 931
BpuEI	CTTGAG	2 cut(s)	232, 298
BsaBI	GATNNNNATC	2 cut(s)	807, 864
BsaHI	GRCGYC	3 cut(s)	324, 490, 829
BsaJI	CCNNGG	2 cut(s)	87, 303
BsaXI	ACNNNNNCTCC	2 cut(s)	490, 520
Bsc4I	CCNNNNNNNGG	2 cut(s)	117, 499
Bse1I	ACTGG	1 cut(s)	12
Bse21I	CCTNAGG	1 cut(s)	870
Bse8I	GATNNNNATC	2 cut(s)	807, 864
BseBI	CCWGG	1 cut(s)	409
BseDI	CCNNGG	2 cut(s)	87, 303
BseGI	GGATG	1 cut(s)	763
BseJI	GATNNNNATC	2 cut(s)	807, 864
BseLI	CCNNNNNNNGG	2 cut(s)	117, 499
BseMII	CTCAG	2 cut(s)	255, 861
BseNI	ACTGG	1 cut(s)	12
BseRI	GAGGAG	3 cut(s)	29, 40, 866
BseXI	GCAGC	3 cut(s)	67, 70, 189
BshFI	GGCC	1 cut(s)	311
BshNI	GGYRCC	2 cut(s)	480, 489
BsiHKCI	CYCGRG	1 cut(s)	304
BslI	CCNNNNNNNGG	2 cut(s)	117, 499
BsnI	GGCC	1 cut(s)	311
BsoBI	CYCGRG	1 cut(s)	304
Bsp143I	GATC	7 cut(s)	275, 511, 643, 737, 769, 907, 952
BspANI	GGCC	1 cut(s)	311
BspCNI	CTCAG	2 cut(s)	254, 862
BspLI	GGNNCC	3 cut(s)	310, 482, 491
BspMI	ACCTGC	2 cut(s)	494, 767
BspPI	GGATC	1 cut(s)	270
BspT107I	GGYRCC	2 cut(s)	480, 489
BsrI	ACTGG	1 cut(s)	12
BssECI	CCNNGG	2 cut(s)	87, 303
BssMI	GATC	7 cut(s)	275, 511, 643, 737, 769, 907, 952
BssNI	GRCGYC	3 cut(s)	324, 490, 829
BssT1I	CCWWGG	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	409
Bst4CI	ACNGT	1 cut(s)	626
Bst6I	CTCTTC	1 cut(s)	359
BstACI	GRCGYC	3 cut(s)	324, 490, 829
BstDEI	CTNAG	3 cut(s)	241, 847, 870
BstF5I	GGATG	1 cut(s)	763
BstH2I	RGCGCY	1 cut(s)	493
BstHHI	GCGC	2 cut(s)	492, 900
BstKTI	GATC	7 cut(s)	278, 514, 646, 740, 772, 910, 955
BstMBI	GATC	7 cut(s)	275, 511, 643, 737, 769, 907, 952
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 487
BstNI	CCWGG	1 cut(s)	409
BstSCI	CCNGG	1 cut(s)	407
BstV1I	GCAGC	3 cut(s)	67, 70, 189
BstX2I	RGATCY	3 cut(s)	275, 737, 907
BstYI	RGATCY	3 cut(s)	275, 737, 907
Bsu36I	CCTNAGG	1 cut(s)	870
BsuRI	GGCC	1 cut(s)	311
BtgZI	GCGATG	1 cut(s)	827
BtsCI	GGATG	1 cut(s)	763
BtsIMutI	CAGTG	1 cut(s)	334
BveI	ACCTGC	2 cut(s)	494, 767
CaiI	CAGNNNCTG	3 cut(s)	164, 419, 509
CfoI	GCGC	2 cut(s)	492, 900
Cfr13I	GGNCC	1 cut(s)	309
CviAII	CATG	3 cut(s)	473, 560, 767
DdeI	CTNAG	3 cut(s)	241, 847, 870
DinI	GGCGCC	1 cut(s)	491
DpnI	GATC	7 cut(s)	277, 513, 645, 739, 771, 909, 954
DpnII	GATC	7 cut(s)	275, 511, 643, 737, 769, 907, 952
Eam1104I	CTCTTC	1 cut(s)	359
EarI	CTCTTC	1 cut(s)	359
Eco130I	CCWWGG	1 cut(s)	87
Eco57I	CTGAAG	1 cut(s)	126
Eco81I	CCTNAGG	1 cut(s)	870
Eco88I	CYCGRG	1 cut(s)	304
EcoO109I	RGGNCCY	1 cut(s)	309
EcoRII	CCWGG	1 cut(s)	407
EcoT14I	CCWWGG	1 cut(s)	87
EgeI	GGCGCC	1 cut(s)	491
EheI	GGCGCC	1 cut(s)	491
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	3 cut(s)	476, 563, 770
FatI	CATG	3 cut(s)	472, 559, 766
FauNDI	CATATG	1 cut(s)	786
FbaI	TGATCA	2 cut(s)	769, 952
Fnu4HI	GCNGC	3 cut(s)	81, 84, 178
FokI	GGATG	1 cut(s)	770
Fsp4HI	GCNGC	3 cut(s)	81, 84, 178
FspBI	CTAG	1 cut(s)	74
GlaI	GCGC	2 cut(s)	491, 899
GluI	GCNGC	3 cut(s)	81, 84, 178
HaeII	RGCGCY	1 cut(s)	493
HaeIII	GGCC	1 cut(s)	311
HhaI	GCGC	2 cut(s)	492, 900
Hin1I	GRCGYC	3 cut(s)	324, 490, 829
Hin1II	CATG	3 cut(s)	476, 563, 770
Hin6I	GCGC	2 cut(s)	490, 898
HinP1I	GCGC	2 cut(s)	490, 898
HphI	GGTGA	2 cut(s)	638, 806
Hpy166II	GTNNAC	2 cut(s)	400, 782
Hpy188III	TCNNGA	4 cut(s)	279, 463, 869, 947
Hpy8I	GTNNAC	2 cut(s)	400, 782
Hpy99I	CGWCG	1 cut(s)	326
HpyAV	CCTTC	7 cut(s)	141, 276, 347, 630, 723, 784, 850
HpyCH4III	ACNGT	1 cut(s)	626
HpyCH4IV	ACGT	3 cut(s)	324, 664, 829
HpyCH4V	TGCA	2 cut(s)	4, 563
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 487
HpyF3I	CTNAG	3 cut(s)	241, 847, 870
HpySE526I	ACGT	3 cut(s)	324, 664, 829
Hsp92I	GRCGYC	3 cut(s)	324, 490, 829
Hsp92II	CATG	3 cut(s)	476, 563, 770
HspAI	GCGC	2 cut(s)	490, 898
KasI	GGCGCC	1 cut(s)	489
Ksp22I	TGATCA	2 cut(s)	769, 952
Kzo9I	GATC	7 cut(s)	275, 511, 643, 737, 769, 907, 952
LmnI	GCTCC	4 cut(s)	64, 732, 923, 949
Lsp1109I	GCAGC	3 cut(s)	67, 70, 189
LweI	GCATC	3 cut(s)	91, 909, 931
MaeI	CTAG	1 cut(s)	74
MaeII	ACGT	3 cut(s)	324, 664, 829
MaeIII	GTNAC	3 cut(s)	212, 251, 722
MalI	GATC	7 cut(s)	277, 513, 645, 739, 771, 909, 954
MboI	GATC	7 cut(s)	275, 511, 643, 737, 769, 907, 952
MboII	GAAGA	7 cut(s)	52, 376, 382, 426, 564, 600, 917
MfeI	CAATTG	1 cut(s)	587
MflI	RGATCY	3 cut(s)	275, 737, 907
MluCI	AATT	1 cut(s)	587
Mly113I	GGCGCC	1 cut(s)	490
MlyI	GAGTC	5 cut(s)	155, 220, 239, 468, 713
MmeI	TCCRAC	1 cut(s)	687
MseI	TTAA	2 cut(s)	882, 936
MspR9I	CCNGG	1 cut(s)	409
MunI	CAATTG	1 cut(s)	587
MvaI	CCWGG	1 cut(s)	409
MwoI	GCNNNNNNNGC	2 cut(s)	89, 487
NarI	GGCGCC	1 cut(s)	490
NdeI	CATATG	1 cut(s)	786
NdeII	GATC	7 cut(s)	275, 511, 643, 737, 769, 907, 952
NlaIII	CATG	3 cut(s)	476, 563, 770
NlaIV	GGNNCC	3 cut(s)	310, 482, 491
NmuCI	GTSAC	3 cut(s)	212, 251, 722
PcsI	WCGNNNNNNNCGW	1 cut(s)	670
PfeI	GAWTC	7 cut(s)	167, 404, 416, 605, 689, 710, 875
PkrI	GCNGC	3 cut(s)	82, 85, 179
PleI	GAGTC	5 cut(s)	155, 219, 239, 467, 712
PluTI	GGCGCC	1 cut(s)	493
PpsI	GAGTC	5 cut(s)	155, 219, 239, 467, 712
PshBI	ATTAAT	1 cut(s)	936
Psp6I	CCWGG	1 cut(s)	407
PspGI	CCWGG	1 cut(s)	407
PspN4I	GGNNCC	3 cut(s)	310, 482, 491
PspPI	GGNCC	1 cut(s)	309
PstNI	CAGNNNCTG	3 cut(s)	164, 419, 509
PsuI	RGATCY	3 cut(s)	275, 737, 907
SaqAI	TTAA	2 cut(s)	882, 936
SatI	GCNGC	3 cut(s)	81, 84, 178
Sau3AI	GATC	7 cut(s)	275, 511, 643, 737, 769, 907, 952
Sau96I	GGNCC	1 cut(s)	309
SchI	GAGTC	5 cut(s)	155, 220, 239, 468, 713
ScrFI	CCNGG	1 cut(s)	409
SfaNI	GCATC	3 cut(s)	91, 909, 931
SfoI	GGCGCC	1 cut(s)	491
SmlI	CTYRAG	2 cut(s)	247, 313
SmoI	CTYRAG	2 cut(s)	247, 313
Sse9I	AATT	1 cut(s)	587
SspDI	GGCGCC	1 cut(s)	489
SspMI	CTAG	1 cut(s)	74
StyD4I	CCNGG	1 cut(s)	407
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	1 cut(s)	626
TaiI	ACGT	3 cut(s)	327, 667, 832
TaqI	TCGA	3 cut(s)	12, 583, 903
TasI	AATT	1 cut(s)	587
TfiI	GAWTC	7 cut(s)	167, 404, 416, 605, 689, 710, 875
Tru1I	TTAA	2 cut(s)	882, 936
Tru9I	TTAA	2 cut(s)	882, 936
TscAI	CASTG	1 cut(s)	334
TseFI	GTSAC	3 cut(s)	212, 251, 722
TseI	GCWGC	3 cut(s)	80, 83, 177
Tsp45I	GTSAC	3 cut(s)	212, 251, 722
TspDTI	ATGAA	4 cut(s)	366, 459, 549, 803
TspRI	CASTG	1 cut(s)	334
VspI	ATTAAT	1 cut(s)	936
XspI	CTAG	1 cut(s)	74
ZraI	GACGTC	2 cut(s)	325, 830

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.