Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0004024

Physical Location & Seq

Genomic Coordinates Forward (+)

1884770 .. 1885747

Gene Structure 978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g02730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGACACCAGGAGGTTCATGCAGCTGGTTGAGGAGAAAAAGAAAAGAGCTTTGGAGAAGAAAGAAGCCCCGCTGAAATGGGAGCAGAAACTAGAAGCTGCTGCTAAGGCAAAAGCTGATGCCGAAGCCAAAGAGAAGAAGCTGAAATCTTCAAAGCATAAGAGAAGATCTGCGTCAGAGTCTGATAGCGATAGCGACACTGACAGAAGTGATGGGAGAAGAAGGTCAAGTAAAAGAACTCACAAGAAGCACAAGAAGCGAACTCACTCCGATGCAAGTGACAGTGAAATGAGGAAGGAGAAGAAATCCAAGCGAAAGCCAAAGAAACATTCCTCAGGCTCGAATGATGATAGCAGTGATGGGTATGAGAGTGATTACGAAGGAGATAGGAAGAGGAAGAAGAGAAGCCACAAAAAGCACAGGCATCATGATTCTAGATCAGATTCTGGTCCGGATTCTTCCAGTGACGATGATAGTGATACAGTGAAGAGAAGTCATTCGAGGCACCACAAACGCCACCCCAGGTCAGACTCAGAATCATCTGGTTCTTATAGTGATGAGGACGAGAGAAGAATCCGAAGGGGTCATGCTAAGCACCACAAACGCCAGAGGCATTTGAGATCTGTTTCCCCTGAGTCAAGTTATGAGGATGGTGAGGTTAGAAGGAAAAGGCACGCAAGACACCACAAACGTCATAGGCGATCACGATCGCATAGTGTTGATTCAAGATCATCAGATCCTGATTCCCACAAACGCGGCAGAAGGAGCAGATCTCTGGGAAAGTCATCAGATGACAACCGCGACGAGGCTGATAAACAGTTGAAGCACAAGAGAAGTGGTCACCATAGCCATCATCACCACAAGCATCGTCACCACCACTCAAAAGAGGAAAAAGATAACCATCCTCGGGTTTCGGGTGAGCCCAACGGAAAGCACATAGAAGATGCTAGTGCAAATGCAACCGATAATAACAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

326

Amino Acids

38.0

Weight (kDa)

10.23

Isoelectric Point (pI)

93.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01100 AT2G01100 AT2G01100
fragaria_vesca	FvH4_4g26261 FvH4_4g26261 FvH4_4g26261 FvH4_4g26263
malus_domestica	MD13G1031200.v1.1 MD16G1033400.v1.1
prunus_persica	Prupe.1G320900_v2.0.a1 Prupe.1G320900_v2.0.a1 Prupe.1G320900_v2.0.a1
pyrus_communis	pycom13g02730 pycom16g02800
rosa_chinensis	RchiOBHm_Chr2g0167881 RchiOBHm_Chr2g0167891 RchiOBHm_Chr4g0433871
rosa_laevigata	RLG00000006721 RLG00000011334 RLG00000017078
rosa_multiflora	Rmu_sc0000352.1_g000002
rosa_roxburghii	Rroxscaffold_5G00375270
rosa_rugosa	Rorug04G0272000 Rorug04G0272000 Rorug04G0272000
rosa_samantha	Rh2BG014400 Rh4AG326700 Rh4DG330900 Rh5DG507000 Rh6AG509600 Rh7BG051000 Rh7CG171900
rosa_wichuraiana	Rw4G028320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	504
AccII	CGCG	2 cut(s)	756, 801
AccIII	TCCGGA	1 cut(s)	451
AciI	CCGC	3 cut(s)	71, 756, 799
AclWI	GGATC	1 cut(s)	731
AfiI	CCNNNNNNNGG	2 cut(s)	805, 907
AgsI	TTSAA	3 cut(s)	153, 726, 823
AjnI	CCWGG	2 cut(s)	8, 521
AjuI	GAANNNNNNNTTGG	4 cut(s)	35, 67, 313, 345
AluBI	AGCT	5 cut(s)	25, 50, 98, 116, 142
AluI	AGCT	5 cut(s)	25, 50, 98, 116, 142
AlwI	GGATC	1 cut(s)	731
AlwNI	CAGNNNCTG	3 cut(s)	182, 446, 740
Ama87I	CYCGRG	1 cut(s)	906
Aor13HI	TCCGGA	1 cut(s)	451
ApeKI	GCWGC	3 cut(s)	22, 98, 101
Asp700I	GAANNNNTTC	1 cut(s)	496
AspS9I	GGNCC	1 cut(s)	449
AsuHPI	GGTGA	5 cut(s)	665, 833, 848, 863, 929
AvaI	CYCGRG	1 cut(s)	906
AvaII	GGWCC	1 cut(s)	449
AxyI	CCTNAGG	1 cut(s)	334
BanI	GGYRCC	1 cut(s)	504
BanII	GRGCYC	1 cut(s)	924
BbvI	GCAGC	3 cut(s)	34, 85, 88
BccI	CCATC	5 cut(s)	206, 353, 644, 858, 909
BciT130I	CCWGG	2 cut(s)	10, 523
BfaI	CTAG	3 cut(s)	92, 435, 948
BglII	AGATCT	3 cut(s)	167, 620, 770
BisI	GCNGC	4 cut(s)	23, 99, 102, 757
BlpI	GCTNAGC	1 cut(s)	591
BlsI	GCNGC	4 cut(s)	24, 100, 103, 758
Bme1390I	CCNGG	2 cut(s)	10, 523
Bme18I	GGWCC	1 cut(s)	449
BmeT110I	CYCGRG	1 cut(s)	906
BmgT120I	GGNCC	1 cut(s)	449
BmiI	GGNNCC	1 cut(s)	506
BmrFI	CCNGG	2 cut(s)	10, 523
BmsI	GCATC	5 cut(s)	109, 262, 433, 874, 934
BplI	GAGNNNNNCTC	2 cut(s)	757, 789
Bpu10I	CCTNAGC	1 cut(s)	105
Bpu1102I	GCTNAGC	1 cut(s)	591
BsaBI	GATNNNNATC	2 cut(s)	706, 900
BsaJI	CCNNGG	2 cut(s)	521, 905
BsaWI	WCCGGW	1 cut(s)	451
Bsc4I	CCNNNNNNNGG	2 cut(s)	805, 907
Bse1I	ACTGG	1 cut(s)	462
Bse21I	CCTNAGG	1 cut(s)	334
Bse8I	GATNNNNATC	2 cut(s)	706, 900
BseAI	TCCGGA	1 cut(s)	451
BseBI	CCWGG	2 cut(s)	10, 523
BseDI	CCNNGG	2 cut(s)	521, 905
BseGI	GGATG	2 cut(s)	655, 901
BseJI	GATNNNNATC	2 cut(s)	706, 900
BseLI	CCNNNNNNNGG	2 cut(s)	805, 907
BseMII	CTCAG	3 cut(s)	348, 546, 624
BseNI	ACTGG	1 cut(s)	462
BseRI	GAGGAG	1 cut(s)	47
BseXI	GCAGC	3 cut(s)	34, 85, 88
Bsh1236I	CGCG	2 cut(s)	756, 801
Bsh1285I	CGRYCG	1 cut(s)	710
BshNI	GGYRCC	1 cut(s)	504
BsiEI	CGRYCG	1 cut(s)	710
BsiHKCI	CYCGRG	1 cut(s)	906
BsiSI	CCGG	1 cut(s)	452
BslI	CCNNNNNNNGG	2 cut(s)	805, 907
BsoBI	CYCGRG	1 cut(s)	906
Bsp1286I	GDGCHC	1 cut(s)	924
Bsp13I	TCCGGA	1 cut(s)	451
Bsp143I	GATC	8 cut(s)	167, 437, 620, 701, 707, 728, 736, 770
Bsp1720I	GCTNAGC	1 cut(s)	591
BspACI	CCGC	3 cut(s)	71, 756, 799
BspCNI	CTCAG	3 cut(s)	347, 545, 625
BspEI	TCCGGA	1 cut(s)	451
BspFNI	CGCG	2 cut(s)	756, 801
BspHI	TCATGA	1 cut(s)	427
BspLI	GGNNCC	1 cut(s)	506
BspPI	GGATC	1 cut(s)	731
BspT107I	GGYRCC	1 cut(s)	504
BsrI	ACTGG	1 cut(s)	462
BssECI	CCNNGG	2 cut(s)	521, 905
BssMI	GATC	8 cut(s)	167, 437, 620, 701, 707, 728, 736, 770
Bst2UI	CCWGG	2 cut(s)	10, 523
Bst4CI	ACNGT	4 cut(s)	284, 484, 819, 974
Bst6I	CTCTTC	3 cut(s)	386, 395, 482
BstC8I	GCNNGC	1 cut(s)	675
BstDEI	CTNAG	5 cut(s)	105, 334, 532, 591, 633
BstEII	GGTNACC	1 cut(s)	839
BstF5I	GGATG	2 cut(s)	655, 901
BstFNI	CGCG	2 cut(s)	756, 801
BstKTI	GATC	8 cut(s)	170, 440, 623, 704, 710, 731, 739, 773
BstMBI	GATC	8 cut(s)	167, 437, 620, 701, 707, 728, 736, 770
BstMCI	CGRYCG	1 cut(s)	710
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 256, 765
BstNI	CCWGG	2 cut(s)	10, 523
BstPI	GGTNACC	1 cut(s)	839
BstSCI	CCNGG	2 cut(s)	8, 521
BstUI	CGCG	2 cut(s)	756, 801
BstV1I	GCAGC	3 cut(s)	34, 85, 88
BstX2I	RGATCY	4 cut(s)	167, 620, 736, 770
BstYI	RGATCY	4 cut(s)	167, 620, 736, 770
Bsu36I	CCTNAGG	1 cut(s)	334
BtsCI	GGATG	2 cut(s)	655, 901
BtsI	GCAGTG	1 cut(s)	361
BtsIMutI	CAGTG	5 cut(s)	198, 289, 361, 469, 489
Cac8I	GCNNGC	1 cut(s)	675
CaiI	CAGNNNCTG	3 cut(s)	182, 446, 740
CciI	TCATGA	1 cut(s)	427
Cfr13I	GGNCC	1 cut(s)	449
CseI	GACGC	1 cut(s)	162
CspCI	CAANNNNNGTGG	2 cut(s)	817, 852
CviAII	CATG	3 cut(s)	19, 428, 587
DdeI	CTNAG	5 cut(s)	105, 334, 532, 591, 633
DpnI	GATC	8 cut(s)	169, 439, 622, 703, 709, 730, 738, 772
DpnII	GATC	8 cut(s)	167, 437, 620, 701, 707, 728, 736, 770
Eam1104I	CTCTTC	3 cut(s)	386, 395, 482
EarI	CTCTTC	3 cut(s)	386, 395, 482
Eco24I	GRGCYC	1 cut(s)	924
Eco47I	GGWCC	1 cut(s)	449
Eco81I	CCTNAGG	1 cut(s)	334
Eco88I	CYCGRG	1 cut(s)	906
Eco91I	GGTNACC	1 cut(s)	839
EcoO65I	GGTNACC	1 cut(s)	839
EcoRII	CCWGG	2 cut(s)	8, 521
EcoT38I	GRGCYC	1 cut(s)	924
FaeI	CATG	3 cut(s)	22, 431, 590
FatI	CATG	3 cut(s)	18, 427, 586
FauI	CCCGC	1 cut(s)	78
Fnu4HI	GCNGC	4 cut(s)	23, 99, 102, 757
FokI	GGATG	2 cut(s)	662, 888
FriOI	GRGCYC	1 cut(s)	924
Fsp4HI	GCNGC	4 cut(s)	23, 99, 102, 757
FspBI	CTAG	3 cut(s)	92, 435, 948
GluI	GCNGC	4 cut(s)	23, 99, 102, 757
HapII	CCGG	1 cut(s)	452
HgaI	GACGC	1 cut(s)	162
Hin1II	CATG	3 cut(s)	22, 431, 590
HpaII	CCGG	1 cut(s)	452
HphI	GGTGA	5 cut(s)	665, 833, 848, 863, 929
Hpy188I	TCNGA	9 cut(s)	178, 184, 271, 442, 529, 535, 578, 736, 790
Hpy188III	TCNNGA	6 cut(s)	428, 435, 452, 705, 726, 740
Hpy99I	CGWCG	1 cut(s)	806
HpyAV	CCTTC	6 cut(s)	216, 289, 374, 573, 657, 756
HpyCH4III	ACNGT	4 cut(s)	284, 484, 819, 974
HpyCH4IV	ACGT	1 cut(s)	691
HpyCH4V	TGCA	4 cut(s)	22, 275, 953, 959
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 256, 765
HpyF3I	CTNAG	5 cut(s)	105, 334, 532, 591, 633
HpySE526I	ACGT	1 cut(s)	691
Hsp92II	CATG	3 cut(s)	22, 431, 590
Kpn2I	TCCGGA	1 cut(s)	451
Kzo9I	GATC	8 cut(s)	167, 437, 620, 701, 707, 728, 736, 770
LmnI	GCTCC	2 cut(s)	82, 765
Lsp1109I	GCAGC	3 cut(s)	34, 85, 88
LweI	GCATC	5 cut(s)	109, 262, 433, 874, 934
MaeI	CTAG	3 cut(s)	92, 435, 948
MaeII	ACGT	1 cut(s)	691
MaeIII	GTNAC	4 cut(s)	278, 464, 839, 869
MalI	GATC	8 cut(s)	169, 439, 622, 703, 709, 730, 738, 772
MboI	GATC	8 cut(s)	167, 437, 620, 701, 707, 728, 736, 770
MflI	RGATCY	4 cut(s)	167, 620, 736, 770
MhlI	GDGCHC	1 cut(s)	924
MlyI	GAGTC	3 cut(s)	188, 524, 644
MroI	TCCGGA	1 cut(s)	451
MroXI	GAANNNNTTC	1 cut(s)	496
MslI	CAYNNNNRTG	1 cut(s)	270
MspA1I	CMGCKG	2 cut(s)	25, 73
MspI	CCGG	1 cut(s)	452
MspR9I	CCNGG	2 cut(s)	10, 523
MvaI	CCWGG	2 cut(s)	10, 523
MvnI	CGCG	2 cut(s)	756, 801
MwoI	GCNNNNNNNGC	3 cut(s)	107, 256, 765
NdeII	GATC	8 cut(s)	167, 437, 620, 701, 707, 728, 736, 770
NlaIII	CATG	3 cut(s)	22, 431, 590
NlaIV	GGNNCC	1 cut(s)	506
NmuCI	GTSAC	4 cut(s)	278, 464, 839, 869
PagI	TCATGA	1 cut(s)	427
PcsI	WCGNNNNNNNCGW	1 cut(s)	697
PdmI	GAANNNNTTC	1 cut(s)	496
PfeI	GAWTC	7 cut(s)	431, 443, 455, 536, 573, 722, 743
PkrI	GCNGC	4 cut(s)	24, 100, 103, 758
Ple19I	CGATCG	1 cut(s)	710
PleI	GAGTC	3 cut(s)	187, 524, 643
PpsI	GAGTC	3 cut(s)	187, 524, 643
Psp6I	CCWGG	2 cut(s)	8, 521
PspEI	GGTNACC	1 cut(s)	839
PspGI	CCWGG	2 cut(s)	8, 521
PspN4I	GGNNCC	1 cut(s)	506
PspPI	GGNCC	1 cut(s)	449
PstNI	CAGNNNCTG	3 cut(s)	182, 446, 740
PsuI	RGATCY	4 cut(s)	167, 620, 736, 770
PvuI	CGATCG	1 cut(s)	710
PvuII	CAGCTG	1 cut(s)	25
RseI	CAYNNNNRTG	1 cut(s)	270
SatI	GCNGC	4 cut(s)	23, 99, 102, 757
Sau3AI	GATC	8 cut(s)	167, 437, 620, 701, 707, 728, 736, 770
Sau96I	GGNCC	1 cut(s)	449
SchI	GAGTC	3 cut(s)	188, 524, 644
ScrFI	CCNGG	2 cut(s)	10, 523
SduI	GDGCHC	1 cut(s)	924
SfaNI	GCATC	5 cut(s)	109, 262, 433, 874, 934
SinI	GGWCC	1 cut(s)	449
SmiMI	CAYNNNNRTG	1 cut(s)	270
SsiI	CCGC	3 cut(s)	71, 756, 799
SspMI	CTAG	3 cut(s)	92, 435, 948
StyD4I	CCNGG	2 cut(s)	8, 521
TaaI	ACNGT	4 cut(s)	284, 484, 819, 974
TaiI	ACGT	1 cut(s)	694
TaqI	TCGA	2 cut(s)	341, 500
TauI	GCSGC	1 cut(s)	759
TfiI	GAWTC	7 cut(s)	431, 443, 455, 536, 573, 722, 743
TscAI	CASTG	5 cut(s)	205, 289, 361, 469, 489
TseFI	GTSAC	4 cut(s)	278, 464, 839, 869
TseI	GCWGC	3 cut(s)	22, 98, 101
Tsp45I	GTSAC	4 cut(s)	278, 464, 839, 869
TspDTI	ATGAA	1 cut(s)	7
TspGWI	ACGGA	1 cut(s)	942
TspRI	CASTG	5 cut(s)	205, 289, 361, 469, 489
VpaK11BI	GGWCC	1 cut(s)	449
XbaI	TCTAGA	1 cut(s)	434
XmnI	GAANNNNTTC	1 cut(s)	496
XspI	CTAG	3 cut(s)	92, 435, 948

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.